PDB: 47065 resultsInfo pagesStatus searchChemie searchBIRD

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7P70	The PDZ-domain of SNTB1 complexed with the PDZ-binding motif of HPV35-E6 Descriptor: Beta-1-syntrophin,Annexin A2, CALCIUM ION, GLYCEROL, ... Authors: Gogl, G, Cousido-Siah, A, Trave, G. Deposit date: 2021-07-19 Release date: 2022-07-27 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: Quantitative fragmentomics allow affinity mapping of interactomes. Nat Commun, 13, 2022
7OJF	CRYO-EM STRUCTURE OF SLYB13-BAMA FROM ESCHERICHIA COLI Descriptor: (2~{R},4~{R},5~{R},6~{R})-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-2-[[(2~{R},3~{S},4~{R},5~{R},6~{R})-5-[[(~{E},3~{R})-3-dodecanoyloxytetradec-5-enoyl]amino]-6-[[(2~{R},3~{S},4~{R},5~{R},6~{R})-3-oxidanyl-5-[[(~{E},3~{R})-3-oxidanyltetradec-11-enoyl]amino]-4-[(~{E},3~{R})-3-oxidanyltetradec-5-enoyl]oxy-6-phosphonooxy-oxan-2-yl]methoxy]-3-phosphonooxy-4-[(~{E},3~{R})-3-tetradecanoyloxytetradec-7-enoyl]oxy-oxan-2-yl]methoxy]-4,5-bis(oxidanyl)oxane-2-carboxylic acid, 2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE, GLYCEROL, ... Authors: Nguyen, V.S, Remaut, H. Deposit date: 2021-05-14 Release date: 2022-07-27 Last modified: 2023-12-20 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: SlyB encapsulates outer membrane proteins in stress-induced lipid nanodomains Nature, 2023
6DKF	Caseinolytic protease (ClpP) from Staphylococcus aureus mutant - V7A Descriptor: ATP-dependent Clp protease proteolytic subunit Authors: Ripstein, Z.A, Vahidi, S, Kay, L.E, Rubinstein, J.L. Deposit date: 2018-05-29 Release date: 2018-06-27 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Reversible inhibition of the ClpP protease via an N-terminal conformational switch. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6DWU	Crystal structure of complex of BBKI and Bovine Trypsin Descriptor: Cationic trypsin, Kunitz-type inihibitor Authors: Li, M, Wlodawer, A, Gustchina, A. Deposit date: 2018-06-28 Release date: 2019-01-30 Method: X-RAY DIFFRACTION (3.96 Å) Cite: Crystal structures of the complex of a kallikrein inhibitor from Bauhinia bauhinioides with trypsin and modeling of kallikrein complexes. Acta Crystallogr D Struct Biol, 75, 2019
6DLA	Crystal structures of an influenza A hemagglutinin antibody Fab CH65:7969d2 Descriptor: CH65:7969d2 Fab heavy chain, CH65:7969d2 Fab light chain, SULFATE ION Authors: Dong, J, Crowe, J.E, Finn, J.A. Deposit date: 2018-05-31 Release date: 2019-06-05 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.004 Å) Cite: Identification of Structurally Related Antibodies in Antibody Sequence Databases Using Rosetta-Derived Position-Specific Scoring. Structure, 28, 2020
7P71	The PDZ domain of MAGI1_2 complexed with the PDZ-binding motif of HPV35-E6 Descriptor: CALCIUM ION, CITRIC ACID, GLYCEROL, ... Authors: Gogl, G, Cousido-Siah, A, Trave, G. Deposit date: 2021-07-19 Release date: 2022-07-27 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Quantitative fragmentomics allow affinity mapping of interactomes. Nat Commun, 13, 2022
7P5D	Variant Surface Glycoprotein 3 (VSG3, MiTat1.3, VSG224) mutant (serine 317 and 319 to alanine) Descriptor: Variant surface glycoprotein, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose Authors: Gkeka, A, Aresta-Branco, F, Stebbins, C.E, Papavasiliou, F.N. Deposit date: 2021-07-14 Release date: 2022-07-27 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.42 Å) Cite: Immunodominant surface epitopes power immune evasion in the African trypanosome. Cell Rep, 42, 2023
6D84	Structure of the cargo bound AP-1:Arf1:tetherin-Nef (L164A, L165A) dileucine mutant dimer Descriptor: ADP-ribosylation factor 1, AP-1 complex subunit beta-1, AP-1 complex subunit gamma-1, ... Authors: Buffalo, C.Z, Morris, K.L, Hurley, J.H. Deposit date: 2018-04-25 Release date: 2018-08-08 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (6.72 Å) Cite: HIV-1 Nefs Are Cargo-Sensitive AP-1 Trimerization Switches in Tetherin Downregulation. Cell, 174, 2018
6DOC	Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 240 s at 21 C Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*CP*GP*AP*TP*GP*T)-3'), GLYCEROL, ... Authors: Samara, N.L, Yang, W. Deposit date: 2018-06-09 Release date: 2018-08-15 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.496 Å) Cite: Cation trafficking propels RNA hydrolysis. Nat. Struct. Mol. Biol., 25, 2018
6D9B	Crystal structure of Corynebacterium diphtheriae UDP-galactopyranose mutase in complex with UDP-glucose (open, oxidized) Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, ISOPROPYL ALCOHOL, SODIUM ION, ... Authors: Wangkanont, K, Kiessling, L.L, Forest, K.T. Deposit date: 2018-04-28 Release date: 2019-05-15 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Substrate recognition by FAD in UDP-galactopyranose mutase To be published
6DOO	Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 100 mM K+ for 120 s at 21 C (dataset 2) Descriptor: 1,2-ETHANEDIOL, 5'-R(*AP*CP*AP*U)-3' portion of cleaved RNA 5'-R(*AP*CP*AP*UP*CP*G)-3', 5'-R(P*CP*G)-3' portion of cleaved RNA (5'-R(*AP*CP*AP*UP*CP*G)-3'), ... Authors: Samara, N.L, Yang, W. Deposit date: 2018-06-09 Release date: 2018-08-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.44 Å) Cite: Cation trafficking propels RNA hydrolysis. Nat. Struct. Mol. Biol., 25, 2018
6DP0	Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2.5 mM Mg2+ and 75 mM K+ for 40 s at 21 C Descriptor: 1,2-ETHANEDIOL, 5'-R(*AP*CP*AP*U)-3' portion of uncleaved RNA 5'-R(*AP*CP*AP*UP*CP*G)-3', 5'-R(P*CP*G)-3' portion of uncleaved RNA 5'-R(*AP*CP*AP*UP*CP*G)-3', ... Authors: Samara, N.L, Yang, W. Deposit date: 2018-06-09 Release date: 2018-08-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.451 Å) Cite: Cation trafficking propels RNA hydrolysis. Nat. Struct. Mol. Biol., 25, 2018
6DPJ	Crystal Structure of Bacillus Halodurans Ribonuclease H1 K196A in Complex with an RNA/DNA Hybrid: Reaction in 4 mM Mn2+ and 200 mM K+ for 80 s at 21 C Descriptor: 1,2-ETHANEDIOL, 5'-R(*AP*CP*AP*U)-3' portion of intact RNA (5'-R(*AP*CP*AP*UP*CP*G)-3'), 5'-R(P*CP*G)-3' portion of intact RNA (5'-R(*AP*CP*AP*UP*CP*G)-3'), ... Authors: Samara, N.L, Yang, W. Deposit date: 2018-06-09 Release date: 2018-08-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Cation trafficking propels RNA hydrolysis. Nat. Struct. Mol. Biol., 25, 2018
6DPW	Undecorated GTPgammaS microtubule Descriptor: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Zhang, R, Nogales, E. Deposit date: 2018-06-09 Release date: 2018-07-04 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Separating the effects of nucleotide and EB binding on microtubule structure. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7P85	Engineered phosphotriesterase BdPTE 10-2-C3(C59V/C227V) in complex with ethyl-4-methylbenzylphosphonate Descriptor: FORMIC ACID, GLYCEROL, Parathion hydrolase, ... Authors: Eichinger, A, Skerra, A. Deposit date: 2021-07-21 Release date: 2022-08-03 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.47 Å) Cite: Structural and Functional Analysis of a Highly Active Designed Phosphotriesterase for the Detoxification of Organophosphate Nerve Agents Reveals an Unpredicted Conformation of the Active Site Loop. Biochemistry, 62, 2023
6DSP	LsrB from Clostridium saccharobutylicum in complex with AI-2 Descriptor: (2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran, Autoinducer 2-binding protein LsrB Authors: Torcato, I.M, Xavier, K.B, Miller, S.T. Deposit date: 2018-06-14 Release date: 2019-02-06 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.37 Å) Cite: Identification of novel autoinducer-2 receptors inClostridiareveals plasticity in the binding site of the LsrB receptor family. J.Biol.Chem., 294, 2019
7Z6H	Structure of DNA-bound human RAD17-RFC clamp loader and 9-1-1 checkpoint clamp Descriptor: Cell cycle checkpoint control protein RAD9A, Cell cycle checkpoint protein RAD1,Cell cycle checkpoint protein RAD17, Checkpoint protein HUS1, ... Authors: Day, M, Oliver, A.W, Pearl, L.H. Deposit date: 2022-03-11 Release date: 2022-05-04 Last modified: 2022-08-31 Method: ELECTRON MICROSCOPY (3.59 Å) Cite: Structure of the human RAD17-RFC clamp loader and 9-1-1 checkpoint clamp bound to a dsDNA-ssDNA junction. Nucleic Acids Res., 50, 2022
7P59	Variant Surface Glycoprotein 3 (VSG3, MiTat1.3, VSG224) with two O-linked post-translational modifications Descriptor: Variant surface glycoprotein, alpha-D-glucopyranose, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose Authors: Gkeka, A, Arest-Branco, F, Stebbins, C.E, Papavasiliou, F.N. Deposit date: 2021-07-14 Release date: 2022-07-27 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.27 Å) Cite: Immunodominant surface epitopes power immune evasion in the African trypanosome. Cell Rep, 42, 2023
7P8O	Crystal structure of D-aminoacid transaminase from Haliscomenobacter hydrossis in its intermediate form Descriptor: Aminotransferase class IV, MAGNESIUM ION, SULFATE ION Authors: Matyuta, I.O, Boyko, K.M, Bakunova, A.K, Nikolaeva, A.Y, Rakitina, T.V, Bezsudnova, E.Y, Popov, V.O. Deposit date: 2021-07-23 Release date: 2022-08-03 Last modified: 2024-07-03 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Crystal structure of D-aminoacid transaminase from Haliscomenobacter hydrossis in its apo form To Be Published
6DTN	The structure of NTMT1 in complex with compound DC100-1 Descriptor: (6D6)PPKRIA(NH2), DC100-1, N-terminal Xaa-Pro-Lys N-methyltransferase 1 Authors: Noinaj, N, Chen, D, Huang, R. Deposit date: 2018-06-18 Release date: 2019-04-03 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.475 Å) Cite: Discovery of Bisubstrate Inhibitors for Protein N-Terminal Methyltransferase 1. J. Med. Chem., 62, 2019
7P5B	Variant Surface Glycoprotein 3 (VSG3, MiTat1.3, VSG224) mutant (serine 319 to alanine), single O-linked glycosylated at Ser317 Descriptor: Variant surface glycoprotein, alpha-D-glucopyranose, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose Authors: Gkeka, A, Aresta-Branco, F, Stebbins, C.E, Papavasiliou, F.N. Deposit date: 2021-07-14 Release date: 2022-07-27 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.13 Å) Cite: Immunodominant surface epitopes power immune evasion in the African trypanosome. Cell Rep, 42, 2023
6DUI	Crystal structure of LpxC from Pseudomonas aeruginosa in complex with PT801 Descriptor: (2R)-4-{4-[4-(benzyloxy)phenyl]-2-oxopyridin-1(2H)-yl}-N-hydroxy-2-methyl-2-(methylsulfonyl)butanamide, (2S)-4-{4-[4-(benzyloxy)phenyl]-2-oxopyridin-1(2H)-yl}-N-hydroxy-2-methyl-2-(methylsulfonyl)butanamide, 1,2-ETHANEDIOL, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2018-06-20 Release date: 2019-06-26 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Crystal structure of LpxC from Pseudomonas aeruginosa in complex with PT801 to be published
7P5A	Variant Surface Glycoprotein 3 (VSG3, MiTat1.3, VSG224) mutant (serine 317 to alanine), single O-linked glycosylated at Ser319 Descriptor: Variant surface glycoprotein, alpha-D-glucopyranose, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose Authors: Gkeka, A, Aresta-Branco, F, Stebbins, C.E, Papavasiliou, F.N. Deposit date: 2021-07-14 Release date: 2022-07-27 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Immunodominant surface epitopes power immune evasion in the African trypanosome. Cell Rep, 42, 2023
6DV3	Structure of the Salmonella SPI-1 type III secretion injectisome secretin InvG in the open gate state Descriptor: Protein InvG Authors: Hu, J, Worrall, L.J, Vuckovic, M, Atkinson, C.E, Strynadka, N.C.J. Deposit date: 2018-06-22 Release date: 2018-10-03 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Cryo-EM analysis of the T3S injectisome reveals the structure of the needle and open secretin. Nat Commun, 9, 2018
7P72	The PDZ domain of SNX27 complexed with the PDZ-binding motif of MERS-E Descriptor: CALCIUM ION, Envelope small membrane protein, GLYCEROL, ... Authors: Gogl, G, Cousido-Siah, A, Trave, G. Deposit date: 2021-07-19 Release date: 2022-07-27 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Quantitative fragmentomics allow affinity mapping of interactomes. Nat Commun, 13, 2022

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