4SDH
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4TSV
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2KTQ
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![BU of 2ktq by Molmil](/molmil-images/mine/2ktq) | OPEN TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS | Descriptor: | 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*DOC)-3'), DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), ... | Authors: | Li, Y, Waksman, G. | Deposit date: | 1998-07-30 | Release date: | 1999-01-13 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation. EMBO J., 17, 1998
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5NLL
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![BU of 5nll by Molmil](/molmil-images/mine/5nll) | CLOSTRIDIUM BEIJERINCKII FLAVODOXIN: OXIDIZED | Descriptor: | FLAVIN MONONUCLEOTIDE, FLAVODOXIN | Authors: | Ludwig, M.L, Pattridge, K.A, Metzger, A.L, Dixon, M.M, Eren, M, Feng, Y, Swenson, R. | Deposit date: | 1996-12-23 | Release date: | 1997-03-12 | Last modified: | 2024-03-06 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Control of oxidation-reduction potentials in flavodoxin from Clostridium beijerinckii: the role of conformation changes. Biochemistry, 36, 1997
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2HP7
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![BU of 2hp7 by Molmil](/molmil-images/mine/2hp7) | Structure of FliM provides insight into assembly of the switch complex in the bacterial flagella motor | Descriptor: | Flagellar motor switch protein FliM | Authors: | Crane, B.R, Park, S, Lowder, B, Bilwes, A.M, Blair, D.F. | Deposit date: | 2006-07-17 | Release date: | 2006-08-08 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structure of FliM provides insight into assembly of the switch complex in the bacterial flagella motor. Proc.Natl.Acad.Sci.Usa, 103, 2006
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4N7W
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![BU of 4n7w by Molmil](/molmil-images/mine/4n7w) | Crystal Structure of the sodium bile acid symporter from Yersinia frederiksenii | Descriptor: | CITRIC ACID, Transporter, sodium/bile acid symporter family, ... | Authors: | Zhou, X, Levin, E.J, Zhou, M, New York Consortium on Membrane Protein Structure (NYCOMPS) | Deposit date: | 2013-10-16 | Release date: | 2013-12-11 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (1.951 Å) | Cite: | Structural basis of the alternating-access mechanism in a bile acid transporter. Nature, 505, 2013
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4FAK
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![BU of 4fak by Molmil](/molmil-images/mine/4fak) | Crystal Structure of OrfX in Complex with S-Adenosylmethionine | Descriptor: | PHOSPHATE ION, Ribosomal RNA large subunit methyltransferase H, S-ADENOSYLMETHIONINE, ... | Authors: | Safo, M.K, Musayev, F.N, Boundy, S, Archer, G.L, Rife, J.P, O'Farrell, H.C. | Deposit date: | 2012-05-22 | Release date: | 2012-06-06 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Characterization of the Staphylococcus aureus rRNA Methyltransferase Encoded by orfX, the Gene Containing the Staphylococcal Chromosome Cassette mec (SCCmec) Insertion Site. J.Biol.Chem., 288, 2013
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2HZT
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![BU of 2hzt by Molmil](/molmil-images/mine/2hzt) | Crystal Structure of a putative HTH-type transcriptional regulator ytcD | Descriptor: | Putative HTH-type transcriptional regulator ytcD | Authors: | Madegowda, M, Eswaramoorthy, S, Desigan, K, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC) | Deposit date: | 2006-08-09 | Release date: | 2006-08-29 | Last modified: | 2021-02-03 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal Structure of a putative HTH-type transcription regulator ytcD To be Published
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1QXN
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![BU of 1qxn by Molmil](/molmil-images/mine/1qxn) | Solution Structure of the 30 kDa Polysulfide-sulfur Transferase Homodimer from Wolinella Succinogenes | Descriptor: | PENTASULFIDE-SULFUR, sulfide dehydrogenase | Authors: | Lin, Y.J, Dancea, F, Loehr, F, Klimmek, O, Pfeiffer-Marek, S, Nilges, M, Wienk, H, Kroeger, A, Rueterjans, H. | Deposit date: | 2003-09-08 | Release date: | 2004-02-24 | Last modified: | 2022-03-02 | Method: | SOLUTION NMR | Cite: | Solution Structure of the 30 kDa Polysulfide-Sulfur Transferase Homodimer from Wolinella succinogenes Biochemistry, 43, 2004
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4FJR
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![BU of 4fjr by Molmil](/molmil-images/mine/4fjr) | Mode of interaction of Merocyanine 540 with HEW Lysozyme | Descriptor: | 3-[(2E)-2-[(2Z)-4-(1,3-dibutyl-4,6-dioxo-2-thioxotetrahydropyrimidin-5(2H)-ylidene)but-2-en-1-ylidene]-1,3-benzoxazol-3(2H)-yl]propane-1-sulfonic acid, CHLORIDE ION, Lysozyme C | Authors: | Mitra, P, Banerjee, M, Basu, S, Biswas, S. | Deposit date: | 2012-06-12 | Release date: | 2013-07-03 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (1.86 Å) | Cite: | Mode of interaction of Merocyanine 540 dye with lysozyme To be Published
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4V9S
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![BU of 4v9s by Molmil](/molmil-images/mine/4v9s) | Crystal structure of antibiotic GE82832 bound to 70S ribosome | Descriptor: | 16S Ribosomal RNA, 23S Ribosomal RNA, 30S Ribosomal Protein S10, ... | Authors: | Bulkley, D.P, Brandi, L, Polikanov, Y.S, Fabbretti, A, O'Connor, M, Gualerzi, C.O, Steitz, T.A. | Deposit date: | 2013-12-05 | Release date: | 2014-07-09 | Last modified: | 2018-06-27 | Method: | X-RAY DIFFRACTION (3.1 Å) | Cite: | The antibiotics dityromycin and GE82832 bind protein S12 and block EF-G-catalyzed translocation. Cell Rep, 6, 2014
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4V7R
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![BU of 4v7r by Molmil](/molmil-images/mine/4v7r) | Yeast 80S ribosome. | Descriptor: | 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... | Authors: | Ben-Shem, A, Jenner, L, Yusupova, G, Yusupov, M. | Deposit date: | 2010-07-23 | Release date: | 2014-07-09 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (4 Å) | Cite: | Crystal structure of the eukaryotic ribosome. Science, 330, 2010
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2R8Z
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![BU of 2r8z by Molmil](/molmil-images/mine/2r8z) | Crystal structure of YrbI phosphatase from Escherichia coli in complex with a phosphate and a calcium ion | Descriptor: | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, CALCIUM ION, PHOSPHATE ION | Authors: | Tsodikov, O.V, Aggarwal, P, Rubin, J.R, Stuckey, J.A, Woodard, R.W, Biswas, T. | Deposit date: | 2007-09-11 | Release date: | 2008-09-23 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | The Tail of KdsC: CONFORMATIONAL CHANGES CONTROL THE ACTIVITY OF A HALOACID DEHALOGENASE SUPERFAMILY PHOSPHATASE. J.Biol.Chem., 284, 2009
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4V8J
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![BU of 4v8j by Molmil](/molmil-images/mine/4v8j) | Crystal structure of the bacterial ribosome ram mutation G347U. | Descriptor: | 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... | Authors: | Fagan, C.E, Dunkle, J.A, Maehigashi, T, Dunham, C.M. | Deposit date: | 2011-12-20 | Release date: | 2014-07-09 | Last modified: | 2019-07-17 | Method: | X-RAY DIFFRACTION (3.9 Å) | Cite: | Reorganization of an intersubunit bridge induced by disparate 16S ribosomal ambiguity mutations mimics an EF-Tu-bound state. Proc.Natl.Acad.Sci.USA, 110, 2013
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2RBA
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![BU of 2rba by Molmil](/molmil-images/mine/2rba) | Structure of Human Thymine DNA Glycosylase Bound to Abasic and Undamaged DNA | Descriptor: | DNA (5'-D(*DCP*DAP*DGP*DCP*DTP*DCP*DTP*DGP*DTP*DAP*DCP*DGP*DTP*DGP*DAP*DGP*DCP*DAP*DGP*DTP*DGP*DGP*DA)-3'), DNA (5'-D(*DCP*DCP*DAP*DCP*DTP*DGP*DCP*DTP*DCP*DAP*(3DR)P*DGP*DTP*DAP*DCP*DAP*DGP*DAP*DGP*DCP*DTP*DGP*DT)-3'), G/T mismatch-specific thymine DNA glycosylase | Authors: | Maiti, A, Pozharski, E, Drohat, A.C. | Deposit date: | 2007-09-18 | Release date: | 2008-06-17 | Last modified: | 2023-08-30 | Method: | X-RAY DIFFRACTION (2.79 Å) | Cite: | Crystal structure of human thymine DNA glycosylase bound to DNA elucidates sequence-specific mismatch recognition. Proc.Natl.Acad.Sci.Usa, 105, 2008
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4V91
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![BU of 4v91 by Molmil](/molmil-images/mine/4v91) | Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES | Descriptor: | 25S RRNA, 5.8S RRNA, 5S RRNA, ... | Authors: | Fernandez, I.S, Bai, X, Scheres, S.H.W, Ramakrishnan, V. | Deposit date: | 2014-03-21 | Release date: | 2014-07-09 | Last modified: | 2019-12-11 | Method: | ELECTRON MICROSCOPY (3.7 Å) | Cite: | Initiation of Translation by Cricket Paralysis Virus Ires Requires its Translocation in the Ribosome. Cell(Cambridge,Mass.), 157, 2014
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4V9C
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![BU of 4v9c by Molmil](/molmil-images/mine/4v9c) | Allosteric control of the ribosome by small-molecule antibiotics | Descriptor: | 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... | Authors: | Cate, J.H.D, Pulk, A, Blanchard, S.C, Wang, L, Feldman, M.B, Wasserman, M.R, Altman, R. | Deposit date: | 2012-07-25 | Release date: | 2014-07-09 | Last modified: | 2014-12-10 | Method: | X-RAY DIFFRACTION (3.3 Å) | Cite: | Allosteric control of the ribosome by small-molecule antibiotics. Nat.Struct.Mol.Biol., 19, 2012
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4W2F
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![BU of 4w2f by Molmil](/molmil-images/mine/4w2f) | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | Descriptor: | 16S Ribosomal RNA, 23S Ribosomal RNA, 30S Ribosomal Protein S10, ... | Authors: | Polikanov, Y.S, Osterman, I.A, Szal, T, Tashlitsky, V.N, Serebryakova, M.V, Kusochek, P, Bulkley, D, Malanicheva, I.A, Efimenko, T.A, Efremenkova, O.V, Konevega, A.L, Shaw, K.J, Bogdanov, A.A, Rodnina, M.V, Dontsova, O.A, Mankin, A.S, Steitz, T.A, Sergiev, P.V. | Deposit date: | 2014-09-12 | Release date: | 2014-10-15 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Amicoumacin a inhibits translation by stabilizing mRNA interaction with the ribosome. Mol.Cell, 56, 2014
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4V3P
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![BU of 4v3p by Molmil](/molmil-images/mine/4v3p) | The molecular structure of the left-handed supra-molecular helix of eukaryotic polyribosomes | Descriptor: | 18S ribosomal RNA, 26S ribosomal RNA, 40S WHEAT GERM RIBOSOME protein 4, ... | Authors: | Myasnikov, A.G, Afonina, Z.A, Menetret, J.F, Shirokov, V.A, Spirin, A.S, Klaholz, B.P. | Deposit date: | 2014-10-20 | Release date: | 2015-04-22 | Last modified: | 2019-12-18 | Method: | ELECTRON MICROSCOPY (34 Å) | Cite: | The molecular structure of the left-handed supra-molecular helix of eukaryotic polyribosomes. Nat Commun, 5, 2014
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6MC9
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4V93
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![BU of 4v93 by Molmil](/molmil-images/mine/4v93) | Fitted coordinates for Lumbricus terrestris hemoglobin cryo-EM complex (EMD-2627) | Descriptor: | EXTRACELLULAR GLOBIN-2, EXTRACELLULAR GLOBIN-3, EXTRACELLULAR GLOBIN-4, ... | Authors: | Chen, W.T, Chen, Y.C, Liou, H.H, Chao, C.Y. | Deposit date: | 2014-04-16 | Release date: | 2014-07-09 | Last modified: | 2019-12-11 | Method: | ELECTRON MICROSCOPY (8.1 Å) | Cite: | Structural Basis for Cooperative Oxygen Binding and Bracelet-Assisted Assembly of Lumbricus Terrestris Hemoglobin To be Published
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4WCM
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2R7O
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![BU of 2r7o by Molmil](/molmil-images/mine/2r7o) | Crystal Structure of VP1 apoenzyme of Rotavirus SA11 (N-terminal hexahistidine-tagged) | Descriptor: | RNA-dependent RNA polymerase | Authors: | Lu, X, Harrison, S.C, Tao, Y.J, Patton, J.T, Nibert, M.L. | Deposit date: | 2007-09-09 | Release date: | 2008-07-29 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (3.35 Å) | Cite: | Mechanism for coordinated RNA packaging and genome replication by rotavirus polymerase VP1. Structure, 16, 2008
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4V4V
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8QO1
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![BU of 8qo1 by Molmil](/molmil-images/mine/8qo1) | Asymmetric structure of the Borrelia bacteriophage BB1 procapsid, 3D class 3 | Descriptor: | Cytosolic protein, DUF228 domain-containing protein, Decoration protein P03, ... | Authors: | Rumnieks, J, Fuzik, T, Tars, K. | Deposit date: | 2023-10-11 | Release date: | 2023-12-27 | Method: | ELECTRON MICROSCOPY (9.76 Å) | Cite: | Structure of the Borrelia Bacteriophage phi BB1 Procapsid. J.Mol.Biol., 435, 2023
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