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2VRD	THE STRUCTURE OF THE ZINC FINGER FROM THE HUMAN SPLICEOSOMAL PROTEIN U1C Descriptor: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C, ZINC ION Authors: Muto, Y, Pomeranz-Krummel, D, Oubridge, C, Hernandez, H, Robinson, C, Neuhaus, D, Nagai, K. Deposit date: 2008-03-31 Release date: 2008-04-08 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: The Structure and Biochemical Properties of the Human Spliceosomal Protein U1C J.Mol.Biol., 341, 2004
6VZC	Tandem UU:GA mismatch within an RNA helix Descriptor: RNA 28-mer Authors: Nikonowicz, E.P, Chang, A.T. Deposit date: 2020-02-28 Release date: 2020-09-02 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: 2-Amino-1,3-benzothiazole-6-carboxamide Preferentially Binds the Tandem Mismatch Motif r(UY:GA). Biochemistry, 59, 2020
1SXL	RESONANCE ASSIGNMENTS AND SOLUTION STRUCTURE OF THE SECOND RNA-BINDING DOMAIN OF SEX-LETHAL DETERMINED BY MULTIDIMENSIONAL HETERONUCLEAR MAGNETIC RESONANCE SPECTROSCOPY Descriptor: SEX-LETHAL PROTEIN PROTEIN Authors: Lee, A.L, Kanaar, R, Rio, D.C, Wemmer, D.E. Deposit date: 1994-07-01 Release date: 1994-09-30 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Resonance assignments and solution structure of the second RNA-binding domain of sex-lethal determined by multidimensional heteronuclear magnetic resonance. Biochemistry, 33, 1994
2KMJ	High resolution NMR solution structure of a complex of HIV-2 TAR RNA and a synthetic tripeptide in a 1:2 stoichiometry Descriptor: Pyrimidinylpeptide, RNA (28-MER) Authors: Ferner, J, Suhartono, M, Breitung, S, Jonker, H.R.A, Hennig, M, Woehnert, J, Goebel, M, Schwalbe, H. Deposit date: 2009-07-30 Release date: 2009-08-18 Last modified: 2023-11-15 Method: SOLUTION NMR Cite: Structures of HIV TAR RNA-ligand complexes reveal higher binding stoichiometries. Chembiochem, 10, 2009
1ZYR	Structure of Thermus thermophilus RNA polymerase holoenzyme in complex with the antibiotic streptolydigin Descriptor: DNA-directed RNA polymerase alpha chain, DNA-directed RNA polymerase beta chain, DNA-directed RNA polymerase omega chain, ... Authors: Tuske, S, Sarafianos, S.G, Wang, X, Hudson, B, Sineva, E, Mukhopadhyay, J, Birktoft, J.J, Leroy, O, Ismail, S, Clark, A.D, Dharia, C, Napoli, A, Laptenko, O, Lee, J, Borukhov, S, Ebright, R.H, Arnold, E. Deposit date: 2005-06-10 Release date: 2005-09-13 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (3 Å) Cite: Inhibition of bacterial RNA polymerase by streptolydigin: stabilization of a straight-bridge-helix active-center conformation. Cell(Cambridge,Mass.), 122, 2005
4AUK	Crystal structure of C2498 2'-O-ribose methyltransferase RlmM from Escherichia coli Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DI(HYDROXYETHYL)ETHER, ... Authors: Punekar, A.S, Shepherd, T.R, Liljeruhm, J, Forster, A.C, Selmer, M. Deposit date: 2012-05-18 Release date: 2012-08-15 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal Structure of Rlmm, the 2'O-Ribose Methyltransferase for C2498 of Escherichia Coli 23S Rrna. Nucleic Acids Res., 40, 2012
4ATN	Crystal structure of C2498 2'-O-ribose methyltransferase RlmM from Escherichia coli Descriptor: 1,2-ETHANEDIOL, GLYCEROL, RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE M, ... Authors: Punekar, A.S, Shepherd, T.R, Liljeruhm, J, Forster, A.C, Selmer, M. Deposit date: 2012-05-08 Release date: 2012-08-15 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Crystal Structure of Rlmm, the 2'O-Ribose Methyltransferase for C2498 of Escherichia Coli 23S Rrna. Nucleic Acids Res., 40, 2012
2A8K	Structural and Mutational Studies of the Catalytic Domain of Colicin E5a tRNA-Specific Ribonuclease Descriptor: CALCIUM ION, Colicin E5 Authors: Lin, Y.L, Elias, Y, Huang, R.H. Deposit date: 2005-07-08 Release date: 2005-09-20 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structural and mutational studies of the catalytic domain of colicin E5: A tRNA-specific ribonuclease Biochemistry, 44, 2005
2QK9	Human RNase H catalytic domain mutant D210N in complex with 18-mer RNA/DNA hybrid Descriptor: 5'-D(*GP*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*CP*GP*CP*AP*CP*T)-3', 5'-R(*AP*GP*UP*GP*CP*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*CP*C)-3', CITRATE ANION, ... Authors: Nowotny, M, Gaidamakov, S.A, Ghirlando, R, Cerritelli, S.M, Crouch, R.J, Yang, W. Deposit date: 2007-07-10 Release date: 2007-11-13 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Structure of Human RNase H1 Complexed with an RNA/DNA Hybrid: Insight into HIV Reverse Transcription Mol.Cell, 28, 2007
2QKB	Human RNase H catalytic domain mutant D210N in complex with 20-mer RNA/DNA hybrid Descriptor: 1,2-ETHANEDIOL, 5'-D(*DGP*DGP*DAP*DAP*DTP*DCP*DAP*DGP*DGP*DTP*DGP*DTP*DCP*DGP*DCP*DAP*DCP*DTP*DCP*DT)-3', 5'-R(*GP*GP*AP*GP*UP*GP*CP*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*CP*C)-3'), ... Authors: Nowotny, M, Gaidamakov, S.A, Ghirlando, R, Cerritelli, S.M, Crouch, R.J, Yang, W. Deposit date: 2007-07-10 Release date: 2007-11-13 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structure of Human RNase H1 Complexed with an RNA/DNA Hybrid: Insight into HIV Reverse Transcription Mol.Cell, 28, 2007
2QKK	Human RNase H catalytic domain mutant D210N in complex with 14-mer RNA/DNA hybrid Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-D(*GP*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*CP*G)-3', ... Authors: Nowotny, M, Gaidamakov, S.A, Ghirlando, R, Cerritelli, S.M, Crouch, R.J, Yang, W. Deposit date: 2007-07-11 Release date: 2007-11-13 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structure of Human RNase H1 Complexed with an RNA/DNA Hybrid: Insight into HIV Reverse Transcription Mol.Cell, 28, 2007
8BH8	Structure of Est1 from Candida Tropicalis in complex with TLC1 telomerase RNA fragment 444-456 Descriptor: PCIF1_WW domain-containing protein, RNA (5'-R(P*AP*CP*AP*CP*AP*AP*GP*G)-3') Authors: Rety, S, Chen, W.F, Xi, X.G. Deposit date: 2022-10-30 Release date: 2023-11-08 Method: X-RAY DIFFRACTION (2.88 Å) Cite: Structure of Est1 from Candida Tropicalis in complex with TLC1 telomerase RNA fragment 444-456 To Be Published
8BH9	Structure of Est1 from Candida Tropicalis in complex with TLC1 telomerase RNA fragment 427-435 / 496-504 Descriptor: PCIF1_WW domain-containing protein, POTASSIUM ION, RNA (5'-R(P*AP*AP*GP*AP*AP*UP*GP*CP*AP*UP*UP*C)-3') Authors: Rety, S, Chen, W.F, Xi, X.G. Deposit date: 2022-10-30 Release date: 2023-11-15 Method: X-RAY DIFFRACTION (2.09 Å) Cite: Structure of Est1 from Candida Tropicalis in complex with TLC1 telomerase RNA fragment 427-435 / 496-504 To Be Published
3MAG	VACCINIA METHYLTRANSFERASE VP39 COMPLEXED WITH M3ADE AND S-ADENOSYLHOMOCYSTEINE Descriptor: 6-AMINO-3-METHYLPURINE, S-ADENOSYL-L-HOMOCYSTEINE, VP39 Authors: Hu, G, Hodel, A.E, Gershon, P.D, Quiocho, F.A. Deposit date: 1998-07-12 Release date: 1999-07-22 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.8 Å) Cite: mRNA cap recognition: dominant role of enhanced stacking interactions between methylated bases and protein aromatic side chains. Proc.Natl.Acad.Sci.USA, 96, 1999
1OQ0	P6.1 stem loop from the activation domain of hTR Descriptor: P6.1 RNA hairpin from hTR Authors: Leeper, T, Leulliot, N, Varani, G. Deposit date: 2003-03-06 Release date: 2003-05-13 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: The solution structure of an essential stem-loop of human telomerase RNA NUCLEIC ACIDS RES., 31, 2003
2RRB	Refinement of RNA binding domain in human Tra2 beta protein Descriptor: cDNA FLJ40872 fis, clone TUTER2000283, highly similar to Homo sapiens transformer-2-beta (SFRS10) gene Authors: Tsuda, K, Kuwasako, K, Takahashi, M, Someya, T, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Sugano, S, Muto, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2010-06-17 Release date: 2011-04-27 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structural basis for the dual RNA-recognition modes of human Tra2-beta RRM. Nucleic Acids Res., 39, 2011
7DXP	Influenza H5N1 nucleoprotein in complex with nucleotides Descriptor: 1,2-ETHANEDIOL, Nucleoprotein, RNA (5'-R(P*(OMU)P*(OMU)P*(OMU)P*(OMU))-3') Authors: Tang, Y.S, Xu, S, Chen, Y.W, Wang, J.H, Shaw, P.C. Deposit date: 2021-01-19 Release date: 2021-04-14 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal structures of influenza nucleoprotein complexed with nucleic acid provide insights into the mechanism of RNA interaction. Nucleic Acids Res., 49, 2021
1K8S	BULGED ADENOSINE IN AN RNA DUPLEX Descriptor: 5'-R(*GP*CP*GP*GP*CP*AP*CP*CP*UP*GP*CP*C)-3', 5'-R(*GP*GP*CP*AP*GP*AP*GP*UP*GP*CP*CP*GP*C)-3' Authors: Thiviyanathan, V, Guliaev, A.B, Leontis, N.B, Gorenstein, D.G. Deposit date: 2001-10-25 Release date: 2001-11-14 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution conformation of a bulged adenosine base in an RNA duplex by relaxation matrix refinement. J.Mol.Biol., 300, 2000
7DKG	Influenza H5N1 nucleoprotein (truncated) in complex with nucleotides Descriptor: Nucleoprotein, RNA (5'-R(P*(OMU)P*(OMU)P*(OMU))-3') Authors: Tang, Y.S, Xu, S, Chen, Y.W, Wang, J.H, Shaw, P.C. Deposit date: 2020-11-24 Release date: 2021-04-14 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystal structures of influenza nucleoprotein complexed with nucleic acid provide insights into the mechanism of RNA interaction. Nucleic Acids Res., 49, 2021
4DB4	Mss116p DEAD-box helicase domain 2 bound to a chimaeric RNA-DNA duplex Descriptor: 5'-R(*GP*GP*GP*CP*GP*GP*G)-D(P*CP*CP*CP*GP*CP*CP*C)-3', ATP-dependent RNA helicase MSS116, mitochondrial Authors: Mallam, A.L, Del Campo, M, Gilman, B.D, Sidote, D.J, Lambowitz, A. Deposit date: 2012-01-13 Release date: 2012-08-29 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.599 Å) Cite: Structural basis for RNA-duplex recognition and unwinding by the DEAD-box helicase Mss116p. Nature, 490, 2012
1LJ2	Recognition of eIF4G by Rotavirus NSP3 reveals a basis for mRNA circularization Descriptor: GOLD ION, NONSTRUCTURAL RNA-BINDING PROTEIN 34, eukaryotic protein synthesis initiation factor Authors: Groft, C.M, Burley, S.K. Deposit date: 2002-04-18 Release date: 2002-07-05 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.38 Å) Cite: Recognition of eIF4G by rotavirus NSP3 reveals a basis for mRNA circularization. Mol.Cell, 9, 2002
3F73	Alignment of guide-target seed duplex within an argonaute silencing complex Descriptor: ARGONAUTE, DNA (5'-D(P*DTP*DGP*DAP*DGP*DGP*DTP*DAP*DGP*DTP*DAP*DGP*DGP*DTP*DTP*DGP*DTP*DA*DTP*DAP*DGP*DT)-3'), MAGNESIUM ION, ... Authors: Wang, Y, Li, H, Sheng, G, Juranek, S, Tuschl, T, Patel, D.J. Deposit date: 2008-11-07 Release date: 2008-12-16 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3 Å) Cite: Structure of an argonaute silencing complex with a seed-containing guide DNA and target RNA duplex. Nature, 456, 2008
1GX6	Hepatitis C Virus RNA polymerase in complex with UTP and manganese Descriptor: MANGANESE (II) ION, RNA-DIRECTED RNA POLYMERASE, URIDINE 5'-TRIPHOSPHATE Authors: Bressanelli, S, Rey, F.A. Deposit date: 2002-03-27 Release date: 2002-04-10 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.85 Å) Cite: A Structural Analysis of the Hepatitis C Virus RNA Polymerase in Complex with Ribonucleotides J.Virol., 76, 2002
2A6E	Crystal structure of the T. Thermophilus RNA polymerase holoenzyme Descriptor: DNA-directed RNA polymerase alpha chain, DNA-directed RNA polymerase beta chain, DNA-directed RNA polymerase beta' chain, ... Authors: Artsimovitch, I, Vassylyeva, M.N, Svetlov, D, Svetlov, V, Perederina, A, Igarashi, N, Matsugaki, N, Wakatsuki, S, Tahirov, T.H, Vassylyev, D.G, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2005-07-02 Release date: 2005-09-20 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Allosteric modulation of the RNA polymerase catalytic reaction is an essential component of transcription control by rifamycins. Cell(Cambridge,Mass.), 122, 2005
2RNE	Solution structure of the second RNA recognition motif (RRM) of TIA-1 Descriptor: Tia1 protein Authors: Takahashi, M, Kuwasako, K, Abe, C, Tsuda, K, Inoue, M, Terada, T, Shirouzu, M, Kobayashi, N, Kigawa, T, Taguchi, S, Guntert, P, Hayashizaki, Y, Tanaka, A, Muto, Y, Yokoyama, S. Deposit date: 2007-12-19 Release date: 2008-11-04 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the second RNA recognition motif (RRM) domain of murine T cell intracellular antigen-1 (TIA-1) and its RNA recognition mode Biochemistry, 47, 2008

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