Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

3MFI
DownloadVisualize
BU of 3mfi by Molmil
DNA Polymerase Eta in Complex With a cis-syn Thymidine Dimer
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 5'-D(*GP*TP*CP*CP*TP*CP*CP*CP*CP*TP*(DOC))-3', 5'-D(*TP*AP*AP*(TTD)P*GP*AP*GP*GP*GP*GP*AP*GP*GP*AP*C)-3', ...
Authors:Silverstein, T.D, Johnson, R.E, Jain, R, Prakash, L, Prakash, S, Aggarwal, A.K.
Deposit date:2010-04-02
Release date:2010-06-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Structural basis for the suppression of skin cancers by DNA polymerase eta.
Nature, 465, 2010
1ZQZ
DownloadVisualize
BU of 1zqz by Molmil
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7), 31-KD DOMAIN; SOAKED IN THE PRESENCE OF MNCL2 (50 MILLIMOLAR)
Descriptor: DNA POLYMERASE BETA, MANGANESE (II) ION
Authors:Pelletier, H, Sawaya, M.R.
Deposit date:1996-04-19
Release date:1996-11-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis.
Biochemistry, 35, 1996
1ZQY
DownloadVisualize
BU of 1zqy by Molmil
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7), 31-KD DOMAIN; SOAKED IN THE PRESENCE OF MGCL2 (50 MILLIMOLAR)
Descriptor: DNA POLYMERASE BETA
Authors:Pelletier, H, Sawaya, M.R.
Deposit date:1996-04-19
Release date:1996-11-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis.
Biochemistry, 35, 1996
1ZQX
DownloadVisualize
BU of 1zqx by Molmil
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7), 31-KD DOMAIN; SOAKED IN THE PRESENCE OF KCL (150 MILLIMOLAR)
Descriptor: DNA POLYMERASE BETA
Authors:Pelletier, H, Sawaya, M.R.
Deposit date:1996-04-19
Release date:1996-11-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis.
Biochemistry, 35, 1996
1ZQW
DownloadVisualize
BU of 1zqw by Molmil
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7), 31-KD DOMAIN; SOAKED IN THE PRESENCE OF CSCL (150 MILLIMOLAR)
Descriptor: DNA POLYMERASE BETA
Authors:Pelletier, H, Sawaya, M.R.
Deposit date:1996-04-19
Release date:1996-11-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis.
Biochemistry, 35, 1996
1ZQU
DownloadVisualize
BU of 1zqu by Molmil
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7), 31-KD DOMAIN; SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR
Descriptor: DNA POLYMERASE BETA
Authors:Pelletier, H, Sawaya, M.R.
Deposit date:1996-04-19
Release date:1996-11-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis.
Biochemistry, 35, 1996
1BP7
DownloadVisualize
BU of 1bp7 by Molmil
GROUP I MOBILE INTRON ENDONUCLEASE I-CREI COMPLEXED WITH HOMING SITE DNA
Descriptor: CALCIUM ION, DNA (5'-D(*CP*GP*AP*AP*AP*CP*TP*GP*TP*CP*TP*CP*AP*CP*GP*AP*CP*GP*TP*TP*TP*TP* GP*C)-3'), DNA (5'-D(*GP*CP*AP*AP*AP*AP*CP*GP*TP*CP*GP*TP*GP*AP*GP*AP*CP*AP*GP*TP*TP*TP* CP*G)-3'), ...
Authors:Jurica, M.S, Monnat Junior, R.J, Stoddard, B.L.
Deposit date:1998-08-13
Release date:1999-01-06
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (3 Å)
Cite:DNA recognition and cleavage by the LAGLIDADG homing endonuclease I-CreI.
Mol.Cell, 2, 1998
1KLN
DownloadVisualize
BU of 1kln by Molmil
DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX
Descriptor: DNA (5'-D(*GP*CP*CP*GP*CP*GP*AP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*TP*CP*GP*CP*GP*GP*CP*GP*GP*C)-3'), PROTEIN (DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7)), ...
Authors:Beese, L.S, Derbyshire, V, Steitz, T.A.
Deposit date:1994-05-24
Release date:1994-11-30
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure of DNA polymerase I Klenow fragment bound to duplex DNA.
Science, 260, 1993
3D1G
DownloadVisualize
BU of 3d1g by Molmil
Structure of a small molecule inhibitor bound to a DNA sliding clamp
Descriptor: DNA polymerase III subunit beta, [(5R)-5-(2,3-dibromo-5-ethoxy-4-hydroxybenzyl)-4-oxo-2-thioxo-1,3-thiazolidin-3-yl]acetic acid
Authors:Georgescu, R.E, Yurieva, O, Seung-Sup, K, Kuriyan, J, Kong, X.-P, O'Donnell, M.
Deposit date:2008-05-05
Release date:2008-07-29
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Structure of a small-molecule inhibitor of a DNA polymerase sliding clamp.
Proc.Natl.Acad.Sci.Usa, 105, 2008
1UW0
DownloadVisualize
BU of 1uw0 by Molmil
Solution structure of the zinc-finger domain from DNA ligase IIIa
Descriptor: DNA LIGASE III, ZINC ION
Authors:Kulczyk, A.W, Yang, J.-C, Neuhaus, D.
Deposit date:2004-01-27
Release date:2004-08-05
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution Structure and DNA Binding of the Zinc-Finger Domain from DNA Ligase Iiialpha
J.Mol.Biol., 341, 2004
6MHT
DownloadVisualize
BU of 6mht by Molmil
TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH ADOHCY AND DNA CONTAINING 4'-THIO-2'DEOXYCYTIDINE AT THE TARGET
Descriptor: CYTOSINE-SPECIFIC METHYLTRANSFERASE HHAI, DNA (5'-D(P*CP*CP*AP*TP*GP*(5CM)P*GP*CP*TP*GP*AP*C)-3'), DNA (5'-D(P*GP*TP*CP*AP*GP*(4SC)P*GP*CP*AP*TP*GP*G)-3'), ...
Authors:Cheng, X.
Deposit date:1998-08-05
Release date:1998-08-12
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:DNA containing 4'-thio-2'-deoxycytidine inhibits methylation by HhaI methyltransferase.
Nucleic Acids Res., 25, 1997
5YUY
DownloadVisualize
BU of 5yuy by Molmil
DNA polymerase IV - DNA ternary complex 9
Descriptor: DIPHOSPHATE, DNA polymerase IV, DTN, ...
Authors:Kottur, J, Nair, D.T.
Deposit date:2017-11-23
Release date:2018-10-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res., 46, 2018
5YUZ
DownloadVisualize
BU of 5yuz by Molmil
DNA polymerase IV - DNA ternary complex 11
Descriptor: DIPHOSPHATE, DNA polymerase IV, DTN1, ...
Authors:Kottur, J, Nair, D.T.
Deposit date:2017-11-23
Release date:2018-11-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction.
Nucleic Acids Res., 46, 2018
5YUX
DownloadVisualize
BU of 5yux by Molmil
DNA polymerase IV - DNA ternary complex 8
Descriptor: DIPHOSPHATE, DNA polymerase IV, DTN1, ...
Authors:Kottur, J, Nair, D.T.
Deposit date:2017-11-23
Release date:2018-12-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res., 46, 2018
5YYD
DownloadVisualize
BU of 5yyd by Molmil
DNA polymerase IV - ternary complex 15
Descriptor: 5'-O-[hydroxy{[hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]thymidine, DNA polymerase IV, DTN2, ...
Authors:Kottur, J, Nair, D.T.
Deposit date:2017-12-08
Release date:2018-09-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res., 46, 2018
5YV3
DownloadVisualize
BU of 5yv3 by Molmil
DNA polymerase IV - DNA ternary complex 7
Descriptor: DIPHOSPHATE, DNA polymerase IV, DTN1, ...
Authors:Kottur, J, Nair, D.T.
Deposit date:2017-11-23
Release date:2018-11-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res., 46, 2018
5YV0
DownloadVisualize
BU of 5yv0 by Molmil
DNA polymerase IV - DNA ternary complex 12
Descriptor: DIPHOSPHATE, DNA polymerase IV, DTN1, ...
Authors:Kottur, J, Nair, D.T.
Deposit date:2017-11-23
Release date:2018-11-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction.
Nucleic Acids Res., 46, 2018
2ZHX
DownloadVisualize
BU of 2zhx by Molmil
Crystal structure of Uracil-DNA Glycosylase from Mycobacterium tuberculosis in complex with a proteinaceous inhibitor
Descriptor: Uracil-DNA glycosylase, Uracil-DNA glycosylase inhibitor
Authors:Kaushal, P.S, Talawar, R.K, Krishna, P.D.V, Varshney, U, Vijayan, M.
Deposit date:2008-02-11
Release date:2008-05-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Unique features of the structure and interactions of mycobacterial uracil-DNA glycosylase: structure of a complex of the Mycobacterium tuberculosis enzyme in comparison with those from other sources
Acta Crystallogr.,Sect.D, 64, 2008
3FL6
DownloadVisualize
BU of 3fl6 by Molmil
Influence of the incorporation of a cyclohexenyl nucleic acid (CeNA) residue onto the sequence d(GCGTGCG)/d(CGCACGC)
Descriptor: 5'-D(*CP*GP*CP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3', COBALT HEXAMMINE(III)
Authors:Robeyns, K, Herdewijn, P, Van Meervelt, L.
Deposit date:2008-12-18
Release date:2009-12-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Direct observation of two cyclohexenyl (CeNA) ring conformations in duplex DNA.
Artif DNA PNA XNA, 1, 2010
5ZLV
DownloadVisualize
BU of 5zlv by Molmil
DNA polymerase IV - DNA ternary complex with 50mM MgCl2
Descriptor: DIPHOSPHATE, DNA polymerase IV, DTN1, ...
Authors:Kottur, J, Nair, D.T.
Deposit date:2018-03-29
Release date:2018-11-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res., 46, 2018
5YYE
DownloadVisualize
BU of 5yye by Molmil
DNA polymerase IV - ternary complex 16
Descriptor: 5'-O-[hydroxy{[hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]thymidine, DNA polymerase IV, DTN2, ...
Authors:Kottur, J, Nair, D.T.
Deposit date:2017-12-08
Release date:2018-09-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.325 Å)
Cite:Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res., 46, 2018
5YV1
DownloadVisualize
BU of 5yv1 by Molmil
DNA polymerase IV - DNA ternary complex 13
Descriptor: DIPHOSPHATE, DNA polymerase IV, DTN1, ...
Authors:Kottur, J, Nair, D.T.
Deposit date:2017-11-23
Release date:2018-09-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res., 46, 2018
1KFS
DownloadVisualize
BU of 1kfs by Molmil
DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX
Descriptor: DNA (5'-D(*GP*CP*TP*TP*AP*CP*G)-3'), MAGNESIUM ION, PROTEIN (DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7)), ...
Authors:Brautigam, C.A, Steitz, T.A.
Deposit date:1997-08-18
Release date:1998-02-25
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural principles for the inhibition of the 3'-5' exonuclease activity of Escherichia coli DNA polymerase I by phosphorothioates.
J.Mol.Biol., 277, 1998
2BDP
DownloadVisualize
BU of 2bdp by Molmil
CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 9 BASE PAIRS OF DUPLEX DNA
Descriptor: DNA (5'-D(*GP*CP*AP*TP*GP*AP*TP*GP*C)-3'), DNA (5'-D(P*AP*GP*CP*AP*TP*CP*AP*TP*GP*C)-3'), MAGNESIUM ION, ...
Authors:Kiefer, J.R, Mao, C, Beese, L.S.
Deposit date:1997-11-17
Release date:1999-01-13
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Visualizing DNA replication in a catalytically active Bacillus DNA polymerase crystal.
Nature, 391, 1998
6IG1
DownloadVisualize
BU of 6ig1 by Molmil
DNA polymerase IV - DNA ternary complex 10
Descriptor: DIPHOSPHATE, DNA polymerase IV, DTN3, ...
Authors:Kottur, J, Nair, D.T.
Deposit date:2018-09-21
Release date:2018-11-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction.
Nucleic Acids Res., 46, 2018

238582

数据于2025-07-09公开中

PDB statisticsPDBj update infoContact PDBjnumon