Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6L35
DownloadVisualize
BU of 6l35 by Molmil
PSI-LHCI Supercomplex from Physcometrella patens
Descriptor: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
Authors:Zhao, L, Yan, Q.J, Qin, X.C.
Deposit date:2019-10-09
Release date:2021-02-10
Last modified:2025-04-09
Method:ELECTRON MICROSCOPY (3.23 Å)
Cite:Antenna arrangement and energy-transfer pathways of PSI-LHCI from the moss Physcomitrella patens.
Cell Discov, 7, 2021
6L9Z
DownloadVisualize
BU of 6l9z by Molmil
338 bp di-nucleosome assembled with linker histone H1.X
Descriptor: CALCIUM ION, CHLORIDE ION, DNA (338-MER), ...
Authors:Adhireksan, Z, Sharma, D, Lee, P.L, Davey, C.A.
Deposit date:2019-11-11
Release date:2021-02-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Engineering nucleosomes for generating diverse chromatin assemblies.
Nucleic Acids Res., 49, 2021
6XWK
DownloadVisualize
BU of 6xwk by Molmil
Crystal structure of Phormidium rubidum phycocyanin
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, IMIDAZOLE, ...
Authors:Sonani, R.R, Roszak, A.W, Cogdell, R.J, Madamwar, D, Liu, H, Gross, M.L, Blankenship, R.E.
Deposit date:2020-01-23
Release date:2020-04-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Revisiting high-resolution crystal structure of Phormidium rubidum phycocyanin.
Photosyn. Res., 144, 2020
7A4I
DownloadVisualize
BU of 7a4i by Molmil
Aquifex aeolicus lumazine synthase-derived nucleocapsid variant NC-3
Descriptor: Antitermination protein N,6,7-dimethyl-8-ribityllumazine synthase,6,7-dimethyl-8-ribityllumazine synthase
Authors:Tetter, S, Hilvert, D.
Deposit date:2020-08-19
Release date:2021-06-02
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (7.04 Å)
Cite:Evolution of a virus-like architecture and packaging mechanism in a repurposed bacterial protein.
Science, 372, 2021
7A4J
DownloadVisualize
BU of 7a4j by Molmil
Aquifex aeolicus lumazine synthase-derived nucleocapsid variant NC-4
Descriptor: Antitermination protein N,6,7-dimethyl-8-ribityllumazine synthase,6,7-dimethyl-8-ribityllumazine synthase
Authors:Tetter, S, Hilvert, D.
Deposit date:2020-08-19
Release date:2021-06-02
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:Evolution of a virus-like architecture and packaging mechanism in a repurposed bacterial protein.
Science, 372, 2021
6LU8
DownloadVisualize
BU of 6lu8 by Molmil
Cryo-EM structure of a human pre-60S ribosomal subunit - state A
Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ...
Authors:Liang, X, Zuo, M, Zhang, Y, Li, N, Ma, C, Dong, M, Gao, N.
Deposit date:2020-01-26
Release date:2020-08-26
Last modified:2025-04-09
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:Structural snapshots of human pre-60S ribosomal particles before and after nuclear export.
Nat Commun, 11, 2020
8GYW
DownloadVisualize
BU of 8gyw by Molmil
Cryo-EM structure of human CEPT1 complexed with CDP-choline
Descriptor: Choline/ethanolaminephosphotransferase 1, MAGNESIUM ION, [2-CYTIDYLATE-O'-PHOSPHONYLOXYL]-ETHYL-TRIMETHYL-AMMONIUM
Authors:Qian, H.W, Wang, Z.H.
Deposit date:2022-09-24
Release date:2023-03-22
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural basis for catalysis of human choline/ethanolamine phosphotransferase 1.
Nat Commun, 14, 2023
8GZR
DownloadVisualize
BU of 8gzr by Molmil
Cryo-EM structure of the the NS5-NS3 RNA-elongation complex
Descriptor: CYTIDINE-5'-DIPHOSPHATE, Genome polyprotein, MANGANESE (II) ION, ...
Authors:Osawa, T, Ehara, H, Sekine, S.
Deposit date:2022-09-27
Release date:2023-08-02
Last modified:2025-06-25
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structures of dengue virus RNA replicase complexes.
Mol.Cell, 83, 2023
8GZP
DownloadVisualize
BU of 8gzp by Molmil
Cryo-EM structure of the NS5-SLA complex
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Genome polyprotein, MAGNESIUM ION, ...
Authors:Osawa, T, Ehara, H, Sekine, S.
Deposit date:2022-09-27
Release date:2023-08-02
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structures of dengue virus RNA replicase complexes.
Mol.Cell, 83, 2023
8GZQ
DownloadVisualize
BU of 8gzq by Molmil
Cryo-EM structure of the NS5-NS3-SLA complex
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Genome polyprotein, RNA, ...
Authors:Osawa, T, Ehara, H, Sekine, S.
Deposit date:2022-09-27
Release date:2023-08-02
Last modified:2025-06-25
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structures of dengue virus RNA replicase complexes.
Mol.Cell, 83, 2023
6YQG
DownloadVisualize
BU of 6yqg by Molmil
Crystal structure of native Phycocyanin in spacegroup P63 at 1.45 Angstroms.
Descriptor: C-phycocyanin alpha chain, C-phycocyanin beta chain, PHYCOCYANOBILIN, ...
Authors:Feiler, C.G, Falke, S, Sarrou, I.
Deposit date:2020-04-17
Release date:2021-01-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:C-phycocyanin as a highly attractive model system in protein crystallography: unique crystallization properties and packing-diversity screening.
Acta Crystallogr D Struct Biol, 77, 2021
7Y7A
DownloadVisualize
BU of 7y7a by Molmil
In situ double-PBS-PSII-PSI-LHCs megacomplex from Porphyridium purpureum.
Descriptor: (1R,2S)-4-{(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol, (2S)-2,3-dihydroxypropyl octadecanoate, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
Authors:You, X, Zhang, X, Cheng, J, Xiao, Y.N, Sun, S, Sui, S.F.
Deposit date:2022-06-22
Release date:2023-02-08
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:In situ structure of the red algal phycobilisome-PSII-PSI-LHC megacomplex.
Nature, 616, 2023
2F5K
DownloadVisualize
BU of 2f5k by Molmil
Crystal structure of the chromo domain of human MRG15
Descriptor: Mortality factor 4-like protein 1
Authors:Zhang, P, Du, J, Ding, J.
Deposit date:2005-11-26
Release date:2006-11-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of human MRG15 chromo domain and its binding to Lys36-methylated histone H3.
Nucleic Acids Res., 34, 2006
6YPQ
DownloadVisualize
BU of 6ypq by Molmil
Crystal structure of native Phycocyanin from T. elongatus in spacegroup R32 at 1.29 Angstroms
Descriptor: C-phycocyanin alpha chain, C-phycocyanin beta chain, GLYCINE, ...
Authors:Feiler, C.G, Falke, S, Sarrou, I.
Deposit date:2020-04-16
Release date:2021-01-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:C-phycocyanin as a highly attractive model system in protein crystallography: unique crystallization properties and packing-diversity screening.
Acta Crystallogr D Struct Biol, 77, 2021
6YQ8
DownloadVisualize
BU of 6yq8 by Molmil
Crystal structure of native Phycocyanin from T. elongatus in spacegroup P63 at 1.8 Angstroms
Descriptor: 1,2-ETHANEDIOL, C-phycocyanin alpha chain, C-phycocyanin beta chain, ...
Authors:Feiler, C.G, Falke, S, Sarrou, I.
Deposit date:2020-04-16
Release date:2021-01-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:C-phycocyanin as a highly attractive model system in protein crystallography: unique crystallization properties and packing-diversity screening.
Acta Crystallogr D Struct Biol, 77, 2021
3WC0
DownloadVisualize
BU of 3wc0 by Molmil
Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with GTP
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, Likely histidyl tRNA-specific guanylyltransferase, MAGNESIUM ION
Authors:Nakamura, A, Nemoto, T, Sonoda, T, Yamashita, K, Tanaka, I, Yao, M.
Deposit date:2013-05-24
Release date:2013-12-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.03 Å)
Cite:Structural basis of reverse nucleotide polymerization
Proc.Natl.Acad.Sci.USA, 110, 2013
2HIT
DownloadVisualize
BU of 2hit by Molmil
Reaction centre from Rhodobacter sphaeroides strain R-26.1 complexed with dibrominated phosphatidylethanolamine
Descriptor: (1R)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (9S,10S)-9,10-DIBROMOOCTADECANOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, BACTERIOCHLOROPHYLL A, ...
Authors:Roszak, A.W, Gardiner, A.T, Isaacs, N.W, Cogdell, R.J.
Deposit date:2006-06-29
Release date:2007-03-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Brominated Lipids Identify Lipid Binding Sites on the Surface of the Reaction Center from Rhodobacter sphaeroides.
Biochemistry, 46, 2007
2HHK
DownloadVisualize
BU of 2hhk by Molmil
Reaction centre from Rhodobacter sphaeroides strain R-26.1 complexed with dibrominated phosphatidylglycerol
Descriptor: (1R)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (9S,10S)-9,10-DIBROMOOCTADECANOATE, (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, BACTERIOCHLOROPHYLL A, ...
Authors:Roszak, A.W, Gardiner, A.T, Isaacs, N.W, Cogdell, R.J.
Deposit date:2006-06-28
Release date:2007-03-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Brominated Lipids Identify Lipid Binding Sites on the Surface of the Reaction Center from Rhodobacter sphaeroides.
Biochemistry, 46, 2007
2HJ6
DownloadVisualize
BU of 2hj6 by Molmil
Reaction centre from Rhodobacter sphaeroides strain R-26.1 complexed with dibrominated phosphatidylserine
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
Authors:Roszak, A.W, Gardiner, A.T, Isaacs, N.W, Cogdell, R.J.
Deposit date:2006-06-30
Release date:2007-03-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3 Å)
Cite:Brominated Lipids Identify Lipid Binding Sites on the Surface of the Reaction Center from Rhodobacter sphaeroides.
Biochemistry, 46, 2007
8QO1
DownloadVisualize
BU of 8qo1 by Molmil
Asymmetric structure of the Borrelia bacteriophage BB1 procapsid, 3D class 3
Descriptor: Cytosolic protein, DUF228 domain-containing protein, Decoration protein P03, ...
Authors:Rumnieks, J, Fuzik, T, Tars, K.
Deposit date:2023-10-11
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (9.76 Å)
Cite:Structure of the Borrelia Bacteriophage phi BB1 Procapsid.
J.Mol.Biol., 435, 2023
8QO0
DownloadVisualize
BU of 8qo0 by Molmil
Asymmetric structure of the Borrelia bacteriophage BB1 procapsid, 3D class 2
Descriptor: Cytosolic protein, DUF228 domain-containing protein, Decoration protein P03, ...
Authors:Rumnieks, J, Fuzik, T, Tars, K.
Deposit date:2023-09-27
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (10.62 Å)
Cite:Structure of the Borrelia Bacteriophage phi BB1 Procapsid.
J.Mol.Biol., 435, 2023
8R59
DownloadVisualize
BU of 8r59 by Molmil
Structure of the Co(II) triggered TRAP (S33HK35H) protein cage (levo form)
Descriptor: COBALT (II) ION, Transcription attenuation protein MtrB
Authors:Biela, A.P, Heddle, J.G.
Deposit date:2023-11-16
Release date:2024-12-25
Last modified:2025-04-02
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:Designed, Programmable Protein Cages Utilizing Diverse Metal Coordination Geometries Show Reversible, pH-Dependent Assembly.
Macromol Rapid Commun, 46, 2025
8R5A
DownloadVisualize
BU of 8r5a by Molmil
Structure of the Co(II) triggered TRAP (S33HK35H) protein cage (dextro form)
Descriptor: COBALT (II) ION, Transcription attenuation protein MtrB
Authors:Biela, A.P, Heddle, J.G.
Deposit date:2023-11-16
Release date:2024-12-25
Last modified:2025-04-02
Method:ELECTRON MICROSCOPY (2.84 Å)
Cite:Designed, Programmable Protein Cages Utilizing Diverse Metal Coordination Geometries Show Reversible, pH-Dependent Assembly.
Macromol Rapid Commun, 46, 2025
8PKP
DownloadVisualize
BU of 8pkp by Molmil
Cryo-EM structure of the apo Anaphase-promoting complex/cyclosome (APC/C) at 3.2 Angstrom resolution
Descriptor: Anaphase-promoting complex subunit 1, Anaphase-promoting complex subunit 10, Anaphase-promoting complex subunit 11, ...
Authors:Hoefler, A, Yu, J, Chang, L, Zhang, Z, Yang, J, Boland, A, Barford, D.
Deposit date:2023-06-27
Release date:2023-07-19
Last modified:2025-01-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structures of apo-APC/C and APC/C CDH1:EMI1 complexes provide insights into APC/C regulation.
Nat Commun, 15, 2024
5JXH
DownloadVisualize
BU of 5jxh by Molmil
Structure the proprotein convertase furin in complex with meta-guanidinomethyl-Phac-RVR-Amba at 2.0 Angstrom resolution.
Descriptor: 2UC-ARG-VAL-ARG-00S, CALCIUM ION, CHLORIDE ION, ...
Authors:Dahms, S.O, Arciniega, M, Steinmetzer, T, Huber, R, Than, M.E.
Deposit date:2016-05-13
Release date:2016-10-05
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the unliganded form of the proprotein convertase furin suggests activation by a substrate-induced mechanism.
Proc.Natl.Acad.Sci.USA, 113, 2016

238582

数据于2025-07-09公开中

PDB statisticsPDBj update infoContact PDBjnumon