PDB: 3074 resultsInfo pagesStatus searchChemie searchBIRD

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7E9Q	Cryo-EM structure of the SARS-CoV-2 S-6P in complex with 35B5 Fab(1 out RBD, state3) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of 35B5 Fab, Light chain of 35B5 Fab, ... Authors: Wang, X.F, Zhu, Y.Q. Deposit date: 2021-03-04 Release date: 2022-03-09 Last modified: 2022-09-21 Method: ELECTRON MICROSCOPY (3.65 Å) Cite: A potent human monoclonal antibody with pan-neutralizing activities directly dislocates S trimer of SARS-CoV-2 through binding both up and down forms of RBD Signal Transduct Target Ther, 7, 2022
7E9O	Cryo-EM structure of the SARS-CoV-2 S-6P in complex with 35B5 Fab(3 up RBDs, state2) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of 35B5 Fab, Light chain of 35B5 Fab, ... Authors: Wang, X.F, Zhu, Y.Q. Deposit date: 2021-03-04 Release date: 2022-03-09 Last modified: 2022-09-21 Method: ELECTRON MICROSCOPY (3.41 Å) Cite: A potent human monoclonal antibody with pan-neutralizing activities directly dislocates S trimer of SARS-CoV-2 through binding both up and down forms of RBD Signal Transduct Target Ther, 7, 2022
7E9P	Cryo-EM structure of the SARS-CoV-2 S-6P in complex with 35B5 Fab(state2, local refinement of the RBD and 35B5 Fab) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of 35B5 Fab, Light chain of 35B5 Fab, ... Authors: Wang, X.F, Zhu, Y.Q. Deposit date: 2021-03-04 Release date: 2022-03-23 Last modified: 2022-09-21 Method: ELECTRON MICROSCOPY (3.69 Å) Cite: A potent human monoclonal antibody with pan-neutralizing activities directly dislocates S trimer of SARS-CoV-2 through binding both up and down forms of RBD Signal Transduct Target Ther, 7, 2022
7ENG	Cryo-EM structure of the SARS-CoV-2 S-6P in complex with Fab30 (local refinement of the RBD and Fab30) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of Fab30, Light chain of Fab30, ... Authors: Wang, X.F, Zhu, Y.Q. Deposit date: 2021-04-16 Release date: 2022-04-06 Last modified: 2022-09-21 Method: ELECTRON MICROSCOPY (3.59 Å) Cite: A potent human monoclonal antibody with pan-neutralizing activities directly dislocates S trimer of SARS-CoV-2 through binding both up and down forms of RBD Signal Transduct Target Ther, 7, 2022
7E9N	Cryo-EM structure of the SARS-CoV-2 S-6P in complex with 35B5 Fab(1 down RBD, state1) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of 35B5 Fab, Light chain of 35B5 Fab, ... Authors: Wang, X.F, Zhu, Y.Q. Deposit date: 2021-03-04 Release date: 2022-04-06 Last modified: 2022-09-21 Method: ELECTRON MICROSCOPY (3.69 Å) Cite: A potent human monoclonal antibody with pan-neutralizing activities directly dislocates S trimer of SARS-CoV-2 through binding both up and down forms of RBD Signal Transduct Target Ther, 7, 2022
7ENF	Cryo-EM structure of the SARS-CoV-2 S-6P in complex with Fab30 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of Fab30, ... Authors: Wang, X.F, Zhu, Y.Q. Deposit date: 2021-04-16 Release date: 2022-04-06 Last modified: 2022-09-21 Method: ELECTRON MICROSCOPY (2.76 Å) Cite: A potent human monoclonal antibody with pan-neutralizing activities directly dislocates S trimer of SARS-CoV-2 through binding both up and down forms of RBD Signal Transduct Target Ther, 7, 2022
7F46	Cryo-EM structure of the SARS-CoV-2 S-6P in complex with 35B5 Fab (state1, local refinement of the RBD, NTD and 35B5 Fab) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of 35B5 Fab, Light chain of 35B5 Fab, ... Authors: Wang, X.F, Zhu, Y.Q. Deposit date: 2021-06-17 Release date: 2022-03-23 Last modified: 2022-09-21 Method: ELECTRON MICROSCOPY (4.79 Å) Cite: A potent human monoclonal antibody with pan-neutralizing activities directly dislocates S trimer of SARS-CoV-2 through binding both up and down forms of RBD Signal Transduct Target Ther, 7, 2022
7E5Y	Molecular basis for neutralizing antibody 2B11 targeting SARS-CoV-2 RBD Descriptor: 2B11 Fab Heavy chain, 2B11 Fab Light chain, Spike protein S1 Authors: Wu, H, Yu, F, Wang, Q.S, Zhou, H, Wang, W.W, Zhao, T, Pan, Y.B, Yang, X.M. Deposit date: 2021-02-21 Release date: 2021-06-23 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.59 Å) Cite: Screening of potent neutralizing antibodies against SARS-CoV-2 using convalescent patients-derived phage-display libraries. Cell Discov, 7, 2021
7DTD	Voltage-gated sodium channel Nav1.1 and beta4 Descriptor: (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, 2-acetamido-2-deoxy-beta-D-glucopyranose, Sodium channel protein type 1 subunit alpha, ... Authors: Yan, N, Pan, X, Li, Z, Huang, G. Deposit date: 2021-01-04 Release date: 2021-04-07 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Comparative structural analysis of human Na v 1.1 and Na v 1.5 reveals mutational hotspots for sodium channelopathies. Proc.Natl.Acad.Sci.USA, 118, 2021
7ELL	In situ structure of capping enzyme lambda2, penetration protein mu1 of mammalian reovirus capsid asymmetric unit. Descriptor: MYRISTIC ACID, Mu1, mRNA (guanine-N(7)-)-methyltransferase Authors: Zhou, Z.H, Pan, M. Deposit date: 2021-04-12 Release date: 2021-10-20 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Asymmetric reconstruction of mammalian reovirus reveals interactions among RNA, transcriptional factor mu2 and capsid proteins. Nat Commun, 12, 2021
7ELH	In situ structure of transcriptional enzyme complex and capsid shell protein of mammalian reovirus at initiation state Descriptor: Lambda 1, Minor core protein mu2, PHOSPHATE ION, ... Authors: Zhou, Z.H, Pan, M. Deposit date: 2021-04-11 Release date: 2021-10-20 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Asymmetric reconstruction of mammalian reovirus reveals interactions among RNA, transcriptional factor mu2 and capsid proteins. Nat Commun, 12, 2021
7EQB	Crystal structure of the dimerization domain of ZEN-4 Descriptor: Kinesin-like protein, SULFATE ION Authors: Chen, Z, Pan, H. Deposit date: 2021-05-01 Release date: 2022-04-13 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.103 Å) Cite: Mechanistic insights into central spindle assembly mediated by the centralspindlin complex. Proc.Natl.Acad.Sci.USA, 118, 2021
7EQC	Crystal structure of the mini-centralspindlin complex Descriptor: CYtoKinesis defect, Kinesin-like protein Authors: Chen, Z, Pan, H. Deposit date: 2021-05-01 Release date: 2022-04-13 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Mechanistic insights into central spindle assembly mediated by the centralspindlin complex. Proc.Natl.Acad.Sci.USA, 118, 2021
7F0C	Crystal structure of capreomycin phosphotransferase in complex with CMN IIA Descriptor: Capreomycin phosphotransferase, DPP-SER-DPP-UAL-MYN-KBE Authors: Chang, C.Y, Pan, Y.C, Wang, Y.L, Toh, S.I. Deposit date: 2021-06-03 Release date: 2022-05-11 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.07 Å) Cite: Dual-Mechanism Confers Self-Resistance to the Antituberculosis Antibiotic Capreomycin. Acs Chem.Biol., 17, 2022
7F0B	Crystal structure of capreomycin phosphotransferase in complex with ATP Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Capreomycin phosphotransferase Authors: Chang, C.Y, Pan, Y.C, Wang, Y.L, Toh, S.I. Deposit date: 2021-06-03 Release date: 2022-05-11 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.14 Å) Cite: Dual-Mechanism Confers Self-Resistance to the Antituberculosis Antibiotic Capreomycin. Acs Chem.Biol., 17, 2022
7F0A	Crystal structure of capreomycin phosphotransferase Descriptor: Capreomycin phosphotransferase Authors: Chang, C.Y, Pan, Y.C, Wang, Y.L, Toh, S.I. Deposit date: 2021-06-03 Release date: 2022-05-11 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Dual-Mechanism Confers Self-Resistance to the Antituberculosis Antibiotic Capreomycin. Acs Chem.Biol., 17, 2022
7F0F	Crystal structure of capreomycin phosphotransferase in complex with CMN IIB Descriptor: Capreomycin phosphotransferase, DPP-ALA-DPP-UAL-MYN-KBE Authors: Chang, C.Y, Pan, Y.C, Wang, Y.L, Toh, S.I. Deposit date: 2021-06-03 Release date: 2022-05-11 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Dual-Mechanism Confers Self-Resistance to the Antituberculosis Antibiotic Capreomycin. Acs Chem.Biol., 17, 2022
4XML	Crystal structure of Fab of HIV-1 gp120 V3-specific human monoclonal antibody 2424 Descriptor: Heavy chain of HIV-1 gp120 V3-specific human monoclonal antibody 2424, Light chain of HIV-1 gp120 V3-specific human monoclonal antibody 2424 Authors: Pan, R, Kong, X.-P. Deposit date: 2015-01-14 Release date: 2015-07-08 Last modified: 2019-12-11 Method: X-RAY DIFFRACTION (2.68 Å) Cite: Functional and Structural Characterization of Human V3-Specific Monoclonal Antibody 2424 with Neutralizing Activity against HIV-1 JRFL. J.Virol., 89, 2015
6IJJ	Photosystem I of Chlamydomonas reinhardtii Descriptor: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ... Authors: Pan, X, Ma, J, Su, X, Liu, Z, Zhang, X, Li, M. Deposit date: 2018-10-10 Release date: 2019-03-20 Last modified: 2019-05-01 Method: ELECTRON MICROSCOPY (2.89 Å) Cite: Antenna arrangement and energy transfer pathways of a green algal photosystem-I-LHCI supercomplex. Nat Plants, 5, 2019
6IJO	Photosystem I of Chlamydomonas reinhardtii Descriptor: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ... Authors: Pan, X, Ma, J, Su, X, Liu, Z, Zhang, X, Li, M. Deposit date: 2018-10-10 Release date: 2019-03-20 Last modified: 2019-05-01 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Antenna arrangement and energy transfer pathways of a green algal photosystem-I-LHCI supercomplex. Nat Plants, 5, 2019
5DCC	X-RAY CRYSTAL STRUCTURE OF a TEBIPENEM ADDUCT OF L,D TRANSPEPTIDASE 2 FROM MYCOBACTERIUM TUBERCULOSIS Descriptor: (4S)-4-methyl-2,5,7-trioxoheptanoic acid, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, ... Authors: Pan, Y, Basta, L, Lamichhane, G, Bianchet, M.A. Deposit date: 2015-08-23 Release date: 2016-09-28 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.451 Å) Cite: Structural insight into the inactivation of Mycobacterium tuberculosis non-classical transpeptidase LdtMt2 by biapenem and tebipenem. BMC Biochem., 18, 2017
5DC2	X-RAY CRYSTAL STRUCTURE OF A ENZYMATICALLY DEGRADED BIAPENEM-ADDUCT OF L,D-TRANSPEPTIDASE 2 FROM MYCOBACTERIUM TUBERCULOSIS Descriptor: (4S)-4-methyl-2,5,7-trioxoheptanoic acid, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, ... Authors: Pan, Y, Basta, L, Lamichhane, G, Bianchet, M.A. Deposit date: 2015-08-23 Release date: 2016-10-05 Last modified: 2019-12-11 Method: X-RAY DIFFRACTION (2.182 Å) Cite: Structural insight into the inactivation of Mycobacterium tuberculosis non-classical transpeptidase LdtMt2 by biapenem and tebipenem. BMC Biochem., 18, 2017
5Z7A	Crystal structure of NDP52 SKICH region Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, Calcium-binding and coiled-coil domain-containing protein 2, GLYCEROL, ... Authors: Pan, L.F, Fu, T, Liu, J.P, Xie, X.Q. Deposit date: 2018-01-27 Release date: 2019-01-02 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.38 Å) Cite: Mechanistic insights into the interactions of NAP1 with the SKICH domains of NDP52 and TAX1BP1 Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5Z9O	The crystal structure of Cyclopropane-fatty-acyl-phospholipid synthase from Lactobacillus acidophilus Descriptor: CARBONATE ION, Cyclopropane-fatty-acyl-phospholipid synthase, L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE Authors: Pan, C.L, Ma, Y.L, Wang, Q.H. Deposit date: 2018-02-04 Release date: 2019-03-06 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal structure of bacterial cyclopropane-fatty-acyl-phospholipid synthase with phospholipid. J.Biochem., 166, 2019
5Z7G	Crystal structure of TAX1BP1 SKICH region in complex with NAP1 Descriptor: 5-azacytidine-induced protein 2, GLYCEROL, Tax1-binding protein 1 Authors: Pan, L.F, Fu, T, Liu, J.P, Xie, X.Q, Wang, Y.L, Hu, S.C. Deposit date: 2018-01-28 Release date: 2019-01-02 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.301 Å) Cite: Mechanistic insights into the interactions of NAP1 with the SKICH domains of NDP52 and TAX1BP1 Proc. Natl. Acad. Sci. U.S.A., 115, 2018

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