Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6DGG
DownloadVisualize
BU of 6dgg by Molmil
Cronobacter turicensis RpfR quorum-sensing receptor PAS domain in complex with C12:0
Descriptor: LAURIC ACID, RpfR
Authors:Waldron, E.J, Neiditch, M.B.
Deposit date:2018-05-17
Release date:2019-01-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.498 Å)
Cite:Structural basis of DSF recognition by its receptor RpfR and its regulatory interaction with the DSF synthase RpfF.
PLoS Biol., 17, 2019
4Z82
DownloadVisualize
BU of 4z82 by Molmil
Cysteine bound rat cysteine dioxygenase C164S variant at pH 8.1
Descriptor: CYSTEINE, Cysteine dioxygenase type 1, FE (II) ION
Authors:Fellner, M, Tchesnokov, E.P, Siakkou, E, Rutledge, M.T, Kanitz, M, Jameson, G.N.L, Wilbanks, S.M.
Deposit date:2015-04-08
Release date:2016-06-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Influence of cysteine 164 on active site structure in rat cysteine dioxygenase.
J.Biol.Inorg.Chem., 21, 2016
6W9X
DownloadVisualize
BU of 6w9x by Molmil
Crystal structure of Laccase from Thermus thermophilus HB27 with an open conformation of beta-hairpin (Average deposited dose 5.1 MGy)
Descriptor: COPPER (II) ION, Laccase, PENTAETHYLENE GLYCOL
Authors:Miranda-Blancas, R, Rudino-Pinera, E.
Deposit date:2020-03-24
Release date:2021-03-24
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Dynamic behavior of alpha-hairpin loop at laccase of Thermus thermophilus at 1.7 angstroms resolution.
To Be Published
6W6S
DownloadVisualize
BU of 6w6s by Molmil
WT HTLV-1 Protease in Complex with Phosphonated UMass6 (PU6)
Descriptor: HTLV-1 Protease, diethyl [(4-{(2S,3R)-4-{[(4-aminophenyl)sulfonyl](2-ethylbutyl)amino}-2-[({[(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl]oxy}carbonyl)amino]-3-hydroxybutyl}phenoxy)methyl]phosphonate
Authors:Lockbaum, G.J, Henes, M, Kosovrasti, K, Nalivaika, E.A, Ali, A, KurtYilmaz, N, Schiffer, C.A.
Deposit date:2020-03-17
Release date:2021-03-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:To Be Determined
To Be Published
5OKT
DownloadVisualize
BU of 5okt by Molmil
Crystal structure of human Casein Kinase I delta in complex with IWP-2
Descriptor: ACETATE ION, Casein kinase I isoform delta, GLYCEROL, ...
Authors:Pichlo, C, Brunstein, E, Baumann, U.
Deposit date:2017-07-25
Release date:2018-04-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Discovery of Inhibitor of Wnt Production 2 (IWP-2) and Related Compounds As Selective ATP-Competitive Inhibitors of Casein Kinase 1 (CK1) delta / epsilon.
J. Med. Chem., 61, 2018
3E7I
DownloadVisualize
BU of 3e7i by Molmil
Structure of murine inos oxygenase domain with inhibitor AR-C94864
Descriptor: (2R)-5-FLUORO-2-(2-THIENYL)-1,2-DIHYDROQUINAZOLIN-4-AMINE, 5,6,7,8-TETRAHYDROBIOPTERIN, Nitric oxide synthase, ...
Authors:Garcin, E.D, Arvai, A.S, Rosenfeld, R.J, Kroeger, M.D, Crane, B.R, Andersson, G, Andrews, G, Hamley, P.J, Mallinder, P.R, Nicholls, D.J, St-Gallay, S.A, Tinker, A.C, Gensmantel, N.P, Mete, A, Cheshire, D.R, Connolly, S, Stuehr, D.J, Aberg, A, Wallace, A.V, Tainer, J.A, Getzoff, E.D.
Deposit date:2008-08-18
Release date:2008-10-07
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Anchored plasticity opens doors for selective inhibitor design in nitric oxide synthase.
Nat.Chem.Biol., 4, 2008
2Y81
DownloadVisualize
BU of 2y81 by Molmil
Structure and property based design of factor Xa inhibitors: pyrrolidin-2-ones with aminoindane and phenylpyrrolidine P4 motifs
Descriptor: 6-CHLORO-N-((3S)-2-OXO-1-{4-[(2R)-2--PYRROLIDINYL] PHENYL}-3-PYRROLIDINYL)-2-NAPHTHALENESULFONAMIDE, ACTIVATED FACTOR XA HEAVY CHAIN, CALCIUM ION, ...
Authors:Young, R.J, Adams, C, Blows, M, Brown, D, Burns-Kurtis, C.L, Chaudry, L, Chan, C, Convery, M.A, Davies, D.E, Exall, A.M, Foster, G, Harling, J.D, Hortense, E, Irving, W.R, Irvine, S, Jackson, S, Kleanthous, S, Pateman, A.J, Patikis, A.N, Roethka, T.J, Senger, S, Stelman, G.J, Toomey, J.R, West, R.I, Whittaker, C, Zhou, P, Watson, N.S.
Deposit date:2011-02-02
Release date:2011-03-16
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure and Property Based Design of Factor Xa Inhibitors: Pyrrolidin-2-Ones with Aminoindane and Phenylpyrrolidine P4 Motifs.
Bioorg.Med.Chem.Lett., 21, 2011
3E7T
DownloadVisualize
BU of 3e7t by Molmil
Structure of murine iNOS oxygenase domain with inhibitor AR-C102222
Descriptor: 1-(6-CYANO-3-PYRIDYLCARBONYL)-5',8'-DIFLUOROSPIRO[PIPERIDINE-4,2'(1'H)-QUINAZOLINE]-4'-AMINE, 7,8-DIHYDROBIOPTERIN, Nitric oxide synthase, ...
Authors:Garcin, E.D, Arvai, A.S, Rosenfeld, R.J, Kroeger, M.D, Crane, B.R, Andersson, G, Andrews, G, Hamley, P.J, Mallinder, P.R, Nicholls, D.J, St-Gallay, S.A, Tinker, A.C, Gensmantel, N.P, Mete, A, Cheshire, D.R, Connolly, S, Stuehr, D.J, Aberg, A, Wallace, A.V, Tainer, J.A, Getzoff, E.D.
Deposit date:2008-08-18
Release date:2008-10-07
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Anchored plasticity opens doors for selective inhibitor design in nitric oxide synthase.
Nat.Chem.Biol., 4, 2008
8CEA
DownloadVisualize
BU of 8cea by Molmil
Cytochrome c maturation complex CcmABCD, E154Q
Descriptor: Cytochrome c biogenesis ATP-binding export protein CcmA, Heme exporter protein B, Heme exporter protein C, ...
Authors:Ilcu, L, Zhang, L, Einsle, O.
Deposit date:2023-02-01
Release date:2023-09-06
Method:ELECTRON MICROSCOPY (3.94 Å)
Cite:Architecture of the Heme-translocating CcmABCD/E complex required for Cytochrome c maturation.
Nat Commun, 14, 2023
2V62
DownloadVisualize
BU of 2v62 by Molmil
Structure of vaccinia-related kinase 2
Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, SERINE/THREONINE-PROTEIN KINASE VRK2, ...
Authors:Bunkoczi, G, Eswaran, J, Cooper, C, Fedorov, O, Keates, T, Rellos, P, Salah, E, Savitsky, P, Ugochukwu, E, von Delft, F, Arrowsmith, C.H, Edwards, A, Sundstrom, M, Weigelt, J, Knapp, S.
Deposit date:2007-07-13
Release date:2007-08-21
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of the Pseudokinase Vrk3 Reveals a Degraded Catalytic Site, a Highly Conserved Kinase Fold, and a Putative Regulatory Binding Site.
Structure, 17, 2009
5NX3
DownloadVisualize
BU of 5nx3 by Molmil
Combinatorial Engineering of Proteolytically Resistant APPI Variants that Selectively Inhibit Human Kallikrein 6 for Cancer Therapy
Descriptor: Amyloid-beta A4 protein, Kallikrein-6
Authors:Shahar, A, Sananes, A, Radisky, E.S, Papo, N.
Deposit date:2017-05-09
Release date:2018-05-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.296 Å)
Cite:A potent, proteolysis-resistant inhibitor of kallikrein-related peptidase 6 (KLK6) for cancer therapy, developed by combinatorial engineering.
J.Biol.Chem., 293, 2018
8CE1
DownloadVisualize
BU of 8ce1 by Molmil
Cytochrome c maturation complex CcmABCD
Descriptor: Cytochrome c biogenesis ATP-binding export protein CcmA, Heme exporter protein B, Heme exporter protein C, ...
Authors:Ilcu, L, Zhang, L, Einsle, O.
Deposit date:2023-02-01
Release date:2023-09-06
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:Architecture of the Heme-translocating CcmABCD/E complex required for Cytochrome c maturation.
Nat Commun, 14, 2023
6WA2
DownloadVisualize
BU of 6wa2 by Molmil
Crystal structure of EGFR(T790M/V948R) in complex with LN3753
Descriptor: CHLORIDE ION, Epidermal growth factor receptor, N-(3-{5-[2-(acetylamino)pyridin-4-yl]-2-(methylsulfanyl)-1H-imidazol-4-yl}phenyl)-2-fluoro-5-hydroxybenzamide
Authors:Heppner, D.E, Eck, M.J.
Deposit date:2020-03-24
Release date:2021-03-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Design of a "Two-in-One" Mutant-Selective Epidermal Growth Factor Receptor Inhibitor That Spans the Orthosteric and Allosteric Sites.
J.Med.Chem., 65, 2022
6WAK
DownloadVisualize
BU of 6wak by Molmil
A crystal structure of EGFR(T790M/V948R) in complex with LN3754
Descriptor: Epidermal growth factor receptor, MAGNESIUM ION, N-(3-{5-[2-(acetylamino)pyridin-4-yl]-2-(methylsulfanyl)-1H-imidazol-4-yl}phenyl)-2-[(1-oxo-1,3-dihydro-2H-isoindol-2-yl)methyl]benzamide, ...
Authors:Heppner, D.E, Eck, M.J.
Deposit date:2020-03-25
Release date:2021-03-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Design of a "Two-in-One" Mutant-Selective Epidermal Growth Factor Receptor Inhibitor That Spans the Orthosteric and Allosteric Sites.
J.Med.Chem., 65, 2022
4PCP
DownloadVisualize
BU of 4pcp by Molmil
Crystal structure of Phosphotriesterase variant R0
Descriptor: CACODYLATE ION, Phosphotriesterase variant PTE-R0, ZINC ION
Authors:Campbell, E, Kaltenbach, M, Tokuriki, N, Jackson, C.J.
Deposit date:2014-04-16
Release date:2015-05-06
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:The role of protein dynamics in the evolution of new enzyme function.
Nat. Chem. Biol., 12, 2016
2VBP
DownloadVisualize
BU of 2vbp by Molmil
Isopenicillin N synthase with substrate analogue L,L,L-ACAB (unexposed)
Descriptor: FE (II) ION, ISOPENICILLIN N SYNTHETASE, N^6^-[(1R)-2-{[(1S)-1-carboxypropyl]amino}-2-oxo-1-(sulfanylmethyl)ethyl]-6-oxo-L-lysine, ...
Authors:Ge, W, Clifton, I.J, Adlington, R.M, Baldwin, J.E, Rutledge, P.J.
Deposit date:2007-09-14
Release date:2008-11-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystallographic Studies on the Binding of Selectively Deuterated Lld- and Lll-Substrate Epimers by Isopenicillin N Synthase.
Biochem.Biophys.Res.Commun., 398, 2010
3EAO
DownloadVisualize
BU of 3eao by Molmil
Crystal structure of recombinant rat selenoprotein thioredoxin reductase 1 with oxidized C-terminal tail
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Thioredoxin reductase 1, ...
Authors:Sandalova, T, Cheng, Q, Lindqvist, Y, Arner, E.
Deposit date:2008-08-26
Release date:2008-12-02
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structure and catalysis of the selenoprotein thioredoxin reductase 1.
J.Biol.Chem., 284, 2009
5O1R
DownloadVisualize
BU of 5o1r by Molmil
human Fab 5H2 bound to NHBA-C3 from Neisseria meningitidis serogroup B
Descriptor: 1,2-ETHANEDIOL, GNA2132, IGH@ protein, ...
Authors:Malito, E, Maritan, M.
Deposit date:2017-05-19
Release date:2018-05-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Structures of NHBA elucidate a broadly conserved epitope identified by a vaccine induced antibody.
PLoS ONE, 13, 2018
4GUM
DownloadVisualize
BU of 4gum by Molmil
Cystal structure of locked-trimer of human MIF
Descriptor: CHLORIDE ION, Macrophage migration inhibitory factor
Authors:Fan, C, Lolis, E.
Deposit date:2012-08-29
Release date:2013-07-03
Last modified:2020-11-18
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:MIF intersubunit disulfide mutant antagonist supports activation of CD74 by endogenous MIF trimer at physiologic concentrations.
Proc.Natl.Acad.Sci.USA, 110, 2013
6W30
DownloadVisualize
BU of 6w30 by Molmil
Protein Tyrosine Phosphatase 1B Bound to Amorphadiene
Descriptor: Amorphadiene, GLYCEROL, MAGNESIUM ION, ...
Authors:Sarkar, A, Kim, E.Y, Hongdusit, A, Sankaran, B, Fox, J.
Deposit date:2020-03-08
Release date:2021-05-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Microbially Guided Discovery and Biosynthesis of Biologically Active Natural Products.
Acs Synth Biol, 10, 2021
5TX6
DownloadVisualize
BU of 5tx6 by Molmil
Structure of TGF-beta2 derivative with deletion of residues 52-71 and 10 single amino acid mutations (mmTGF-beta2-7M)
Descriptor: CALCIUM ION, Transforming growth factor beta-2
Authors:Petrunak, E.M, Hinck, A.P.
Deposit date:2016-11-15
Release date:2017-03-01
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (2.746 Å)
Cite:An engineered transforming growth factor beta (TGF-beta ) monomer that functions as a dominant negative to block TGF-beta signaling.
J. Biol. Chem., 292, 2017
8CE5
DownloadVisualize
BU of 8ce5 by Molmil
Cytochrome c maturation complex CcmABCD, E154Q, ATP-bound
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cytochrome c biogenesis ATP-binding export protein CcmA, Heme exporter protein B, ...
Authors:Ilcu, L, Zhang, L, Einsle, O.
Deposit date:2023-02-01
Release date:2023-09-06
Method:ELECTRON MICROSCOPY (3.62 Å)
Cite:Architecture of the Heme-translocating CcmABCD/E complex required for Cytochrome c maturation.
Nat Commun, 14, 2023
3EDF
DownloadVisualize
BU of 3edf by Molmil
Structural base for cyclodextrin hydrolysis
Descriptor: CALCIUM ION, Cyclohexakis-(1-4)-(alpha-D-glucopyranose), Cyclomaltodextrinase, ...
Authors:Buedenbender, S, Schulz, G.E.
Deposit date:2008-09-03
Release date:2009-03-03
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural base for enzymatic cyclodextrin hydrolysis
J.Mol.Biol., 385, 2009
5UGH
DownloadVisualize
BU of 5ugh by Molmil
Crystal structure of Mat2a bound to the allosteric inhibitor PF-02929366
Descriptor: 2-(7-chloro-5-phenyl[1,2,4]triazolo[4,3-a]quinolin-1-yl)-N,N-dimethylethan-1-amine, S-adenosylmethionine synthase isoform type-2
Authors:Kaiser, S.E, Feng, J, Stewart, A.E.
Deposit date:2017-01-08
Release date:2017-05-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.062 Å)
Cite:Targeting S-adenosylmethionine biosynthesis with a novel allosteric inhibitor of Mat2A.
Nat. Chem. Biol., 13, 2017
6VXW
DownloadVisualize
BU of 6vxw by Molmil
NMR solution structure of natural scorpion toxin Cl13
Descriptor: Beta-toxin Cl13
Authors:del Rio Portilla, F, Delepierre, M, Lopez Giraldo, A.E.
Deposit date:2020-02-24
Release date:2020-07-08
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The three-dimensional structure of the toxic peptide Cl13 from the scorpion Centruroides limpidus.
Toxicon, 184, 2020

224004

건을2024-08-21부터공개중

PDB statisticsPDBj update infoContact PDBjnumon