PDB: 1931 resultsInfo pagesStatus searchChemie searchBIRD

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8SGU	Crystal structure of the SARS-CoV-2 receptor binding domain Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ... Authors: Sankhala, R.S, Jensen, J.L, Joyce, M.G. Deposit date: 2023-04-13 Release date: 2023-12-13 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Antibody targeting of conserved sites of vulnerability on the SARS-CoV-2 spike receptor-binding domain. Structure, 32, 2024
8KDR	The local refined map of SARS-CoV-2 XBB Variant Spike protein complexed with antibody PW5-535 Descriptor: PW5-535 heavy chain, PW5-535 light chain, Spike glycoprotein Authors: Sun, L, Mao, Q, Wang, Y. Deposit date: 2023-08-10 Release date: 2024-08-14 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Potent and broadly neutralizing antibodies against sarbecoviruses induced by sequential COVID-19 vaccination. Cell Discov, 10, 2024
8KEO	Structure of SARS-CoV-2 Omicron BA.1 Spike complexed with antibody PW5-570 Descriptor: PW5-570 heavy chain, PW5-570 light chain, Spike glycoprotein Authors: Sun, L, Mao, Q, Wang, Y. Deposit date: 2023-08-13 Release date: 2024-08-14 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (2.78 Å) Cite: Potent and broadly neutralizing antibodies against sarbecoviruses induced by sequential COVID-19 vaccination. Cell Discov, 10, 2024
8KEQ	State 1 of SARS-CoV-2 XBB Variant Spike protein trimer complexed with antibody PW5-5 Descriptor: PW5-5 heavy chain, PW5-5 light chain, Spike glycoprotein Authors: Sun, L, Mao, Q, Wang, Y. Deposit date: 2023-08-13 Release date: 2024-08-14 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (3.14 Å) Cite: Potent and broadly neutralizing antibodies against sarbecoviruses induced by sequential COVID-19 vaccination. Cell Discov, 10, 2024
8KEJ	Monomer state of SARS-CoV-2 XBB Variant Spike protein trimer complexed with antibody PW5-5 Descriptor: PW5-5 heavy chain, PW5-5 light chain, Spike glycoprotein Authors: Sun, L, Mao, Q, Wang, Y. Deposit date: 2023-08-11 Release date: 2024-08-14 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (3.73 Å) Cite: Potent and broadly neutralizing antibodies against sarbecoviruses induced by sequential COVID-19 vaccination. Cell Discov, 10, 2024
8KEH	State 2 of SARS-CoV-2 XBB Variant Spike protein trimer complexed with antibody PW5-5 Descriptor: PW5-5 heavy chain, PW5-5 light chain, Spike glycoprotein Authors: Sun, L, Mao, Q, Wang, Y. Deposit date: 2023-08-11 Release date: 2024-09-04 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (3.21 Å) Cite: Potent and broadly neutralizing antibodies against sarbecoviruses induced by sequential COVID-19 vaccination. Cell Discov, 10, 2024
8K19	Neutralization antibody ZCP3B4 bound with SARS-CoV-2 Omicron BA.5 RBD Descriptor: Spike protein S1, ZCP3B4 heavy chain, ZCP3B4 light chain Authors: Tang, B, Dang, S. Deposit date: 2023-07-10 Release date: 2024-10-09 Last modified: 2024-10-30 Method: ELECTRON MICROSCOPY (3.88 Å) Cite: Neutralization antibody ZCP3B4 bound with SARS-CoV-2 Omicron BA.5 RBD To Be Published
8K18	Neutralization antibody ZCP4C9 bound with SARS-CoV-2 Omicron BA.5 RBD Descriptor: Spike protein S1, ZCP4C9 heavy chain, ZCP4C9 light chain Authors: Bingjie, T, Shangyu, D. Deposit date: 2023-07-10 Release date: 2024-10-09 Method: ELECTRON MICROSCOPY (3.68 Å) Cite: Neutralization antibody ZCP4C9 bound with SARS-CoV-2 Omicron BA.5 RBD To Be Published
8SDF	Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody CC25.4 Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Yuan, M, Wilson, I.A. Deposit date: 2023-04-06 Release date: 2024-03-13 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.79 Å) Cite: Broadly neutralizing antibodies targeting a conserved silent face of spike RBD resist extreme SARS-CoV-2 antigenic drift. Biorxiv, 2023
8SIT	Crystal structure of SARS-CoV-2 spike receptor-binding domain in complex with broadly neutralizing antibody CC84.24 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CC84.24 fab heavy chain, CC84.24 fab light chain, ... Authors: Liu, H, Wilson, I.A. Deposit date: 2023-04-16 Release date: 2024-03-13 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (2.91 Å) Cite: Broadly neutralizing antibodies targeting a conserved silent face of spike RBD resist extreme SARS-CoV-2 antigenic drift Biorxiv, 2023
8SDG	Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody CC25.43 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Neutralizing antibody CC25.43 heavy chain, Neutralizing antibody CC25.43 light chain, ... Authors: Yuan, M, Wilson, I.A. Deposit date: 2023-04-06 Release date: 2024-03-13 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (2.71 Å) Cite: Broadly neutralizing antibodies targeting a conserved silent face of spike RBD resist extreme SARS-CoV-2 antigenic drift. Biorxiv, 2023
8SIS	Crystal structure of SARS-CoV-2 spike receptor-binding domain in complex with broadly neutralizing antibody CC84.2 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CC84.2 Fab heavy chain, CC84.2 Fab light chain, ... Authors: Liu, H, Wilson, I.A. Deposit date: 2023-04-16 Release date: 2024-03-13 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (3.08 Å) Cite: Broadly neutralizing antibodies targeting a conserved silent face of spike RBD resist extreme SARS-CoV-2 antigenic drift Biorxiv, 2023
8SIR	Crystal structure of SARS-CoV-2 spike receptor-binding domain in complex with broadly neutralizing antibody CC25.54 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CC25.54 Fab heavy chain, CC25.54 Fab light chain, ... Authors: Liu, H, Wilson, I.A. Deposit date: 2023-04-16 Release date: 2024-03-13 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Broadly neutralizing antibodies targeting a conserved silent face of spike RBD resist extreme SARS-CoV-2 antigenic drift Biorxiv, 2023
8SIQ	Crystal structure of SARS-CoV-2 spike receptor-binding domain in complex with broadly neutralizing antibodies CC25.36 and CV38-142 Fab Descriptor: CC25.36 Fab heavy chain, CC25.36 Fab light chain, CV38-142 Fab heavy chain, ... Authors: Liu, H, Wilson, I.A. Deposit date: 2023-04-16 Release date: 2024-03-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Broadly neutralizing antibodies targeting a conserved silent face of spike RBD resist extreme SARS-CoV-2 antigenic drift Biorxiv, 2023
8SWH	Local refinement of SARS-CoV-2 (HP-GSAS-Mut7) spike NTD in complex with TXG-0078 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, TXG-0078 Fab Heavy chain, ... Authors: Bangaru, B, Ward, A. Deposit date: 2023-05-18 Release date: 2024-05-22 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (3.88 Å) Cite: Deep repertoire mining uncovers ultra-broad coronavirus neutralizing antibodies targeting multiple spike epitopes. Cell Rep, 43, 2024
8SUO	BA.2/AZD1061/AZD3152 structure analysis Descriptor: AZD1061 heavy chain, AZD1061 light chain, AZD3152 heavy chain, ... Authors: Oganesyan, V, van Dyk, N, Dippel, A, Barnes, A, O'Connor, E. Deposit date: 2023-05-12 Release date: 2024-05-15 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (3.3 Å) Cite: X-ray crystal structure of BA.2 RBD bound by two neutralizing antibodies To Be Published
8SDH	Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody CC25.56 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Neutralizing antibody CC25.56 Heavy Chain, ... Authors: Yuan, M, Wilson, I.A. Deposit date: 2023-04-06 Release date: 2024-08-07 Last modified: 2024-09-11 Method: X-RAY DIFFRACTION (2.84 Å) Cite: Broadly neutralizing antibodies targeting a conserved silent face of spike RBD resist extreme SARS-CoV-2 antigenic drift. Biorxiv, 2023
8P9Y	SARS-CoV-2 S protein S:D614G mutant in 3-down with binding site of an entry inhibitor Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, SODIUM ION, ... Authors: Adhav, A, Forcada-Nadal, A, Marco-Marin, C, Lopez-Redondo, M.L, Llacer, J.L. Deposit date: 2023-06-06 Release date: 2023-09-27 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: C-2 Thiophenyl Tryptophan Trimers Inhibit Cellular Entry of SARS-CoV-2 through Interaction with the Viral Spike (S) Protein. J.Med.Chem., 66, 2023
8P99	SARS-CoV-2 S-protein:D614G mutant in 1-up conformation Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1,Spike glycoprotein Authors: Adhav, A, Forcada-Nadal, A, Marco-Marin, C, Lopez-Redondo, M.L, Llacer, J.L. Deposit date: 2023-06-05 Release date: 2023-09-27 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: C-2 Thiophenyl Tryptophan Trimers Inhibit Cellular Entry of SARS-CoV-2 through Interaction with the Viral Spike (S) Protein. J.Med.Chem., 66, 2023
8U28	Gaussian mixture model based single particle refinement - SARS (SARS-CoV-2 Spike Proteins on intact virions from EMPIAR-10492) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Chen, M, Pintilie, G. Deposit date: 2023-09-05 Release date: 2023-11-15 Last modified: 2024-01-24 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Improving resolution and resolvability of single-particle cryoEM structures using Gaussian mixture models. Nat.Methods, 21, 2024
8PQ2	XBB 1.0 RBD bound to P4J15 (Local) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, P4J15 Fragment Antigen-Binding Heavy Chain, P4J15 Fragment Antigen-Binding Light Chain, ... Authors: Duhoo, Y, Lau, K. Deposit date: 2023-07-10 Release date: 2023-11-01 Last modified: 2023-12-06 Method: ELECTRON MICROSCOPY (3.85 Å) Cite: Broadly potent anti-SARS-CoV-2 antibody shares 93% of epitope with ACE2 and provides full protection in monkeys. J Infect, 87, 2023
8PSD	SARS-CoV-2 XBB 1.0 closed conformation. Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Duhoo, Y, Lau, K. Deposit date: 2023-07-13 Release date: 2023-11-01 Last modified: 2023-12-06 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Broadly potent anti-SARS-CoV-2 antibody shares 93% of epitope with ACE2 and provides full protection in monkeys. J Infect, 87, 2023
8TMA	Antibody N3-1 bound to RBD in the up conformation Descriptor: N3-1 Fab heavy chain, N3-1 Fab light chain, Spike glycoprotein Authors: Hsieh, C.-L, McLellan, J.S. Deposit date: 2023-07-29 Release date: 2024-01-17 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: SARS-COV-2 Omicron variants conformationally escape a rare quaternary antibody binding mode. Commun Biol, 6, 2023
8U1G	Prefusion-stabilized SARS-CoV-2 S2 subunit Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S2 Authors: Hsieh, C.-L, McLellan, J.S. Deposit date: 2023-08-31 Release date: 2024-01-24 Last modified: 2024-08-07 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Prefusion-stabilized SARS-CoV-2 S2-only antigen provides protection against SARS-CoV-2 challenge. Nat Commun, 15, 2024
8TM1	Antibody N3-1 bound to RBDs in the up and down conformations Descriptor: N3-1 Fab heavy chain, N3-1 Fab light chain, Spike glycoprotein Authors: Hsieh, C.-L, McLellan, J.S. Deposit date: 2023-07-27 Release date: 2024-01-17 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (2.79 Å) Cite: SARS-COV-2 Omicron variants conformationally escape a rare quaternary antibody binding mode. Commun Biol, 6, 2023

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