PDB: 1931 resultsInfo pagesStatus searchChemie searchBIRD

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7YR0	SARS-CoV-2 BA.2.75 S Trimer in complex with S309 (interface) Descriptor: Heavy chain of S309, IGK@ protein, Spike protein S1, ... Authors: Wang, L. Deposit date: 2022-08-08 Release date: 2022-10-19 Last modified: 2024-10-30 Method: ELECTRON MICROSCOPY (3.98 Å) Cite: Characterization of the enhanced infectivity and antibody evasion of Omicron BA.2.75. Cell Host Microbe, 30, 2022
7YQZ	SARS-CoV-2 BA.2.75 S Trimer in complex with S309 (state3) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, S309 heavy chain, S309 light chain, ... Authors: Wang, L. Deposit date: 2022-08-08 Release date: 2022-10-19 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (3.84 Å) Cite: Characterization of the enhanced infectivity and antibody evasion of Omicron BA.2.75. Cell Host Microbe, 30, 2022
7ZCE	SARS-CoV-2 Spike protein in complex with the single chain fragment scFv76 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,Fibritin, ... Authors: Chaves-Sanjuan, A, Bolognesi, M. Deposit date: 2022-03-28 Release date: 2022-10-12 Last modified: 2023-02-08 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Spike mutation resilient scFv76 antibody counteracts SARS-CoV-2 lung damage upon aerosol delivery. Mol.Ther., 31, 2022
7YQX	SARS-CoV-2 BA.2.75 S Trimer in complex with S309 (state1) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, S309 heavy chain, ... Authors: Wang, L. Deposit date: 2022-08-08 Release date: 2022-10-19 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (3.72 Å) Cite: Characterization of the enhanced infectivity and antibody evasion of Omicron BA.2.75. Cell Host Microbe, 30, 2022
7YQY	SARS-CoV-2 BA.2.75 S Trimer in complex with S309 (state2) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, S309 heavy chain, ... Authors: Wang, L. Deposit date: 2022-08-08 Release date: 2022-10-19 Last modified: 2024-10-09 Method: ELECTRON MICROSCOPY (3.74 Å) Cite: Characterization of the enhanced infectivity and antibody evasion of Omicron BA.2.75. Cell Host Microbe, 30, 2022
7YQW	SARS-CoV-2 BA.2.75 S Trimer (3 RBD Down) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ... Authors: Wang, L. Deposit date: 2022-08-08 Release date: 2022-10-19 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (3.51 Å) Cite: Characterization of the enhanced infectivity and antibody evasion of Omicron BA.2.75. Cell Host Microbe, 30, 2022
7ZCF	SARS-CoV-2 Spike RBD in complex with the single chain fragment scFv76 (Focused Refinement) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,Fibritin, scFv76 single chain fragment Authors: Chaves-Sanjuan, A, Bolognesi, M. Deposit date: 2022-03-28 Release date: 2022-10-12 Last modified: 2023-02-08 Method: ELECTRON MICROSCOPY (4 Å) Cite: Spike mutation resilient scFv76 antibody counteracts SARS-CoV-2 lung damage upon aerosol delivery. Mol.Ther., 31, 2022
7ZBU	CryoEM structure of SARS-CoV-2 spike monomer in complex with neutralising antibody P008_60 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-2-[[5-[(3-ethyl-4-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid, P008_60 antibody, ... Authors: Rosa, A, Pye, V.E, Cronin, N, Cherepanov, P. Deposit date: 2022-03-24 Release date: 2022-08-17 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (4.31 Å) Cite: A neutralizing epitope on the SD1 domain of SARS-CoV-2 spike targeted following infection and vaccination. Cell Rep, 40, 2022
6LZG	Structure of novel coronavirus spike receptor-binding domain complexed with its receptor ACE2 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, Spike protein S1, ... Authors: Wang, Q.H, Song, H, Qi, J.X. Deposit date: 2020-02-19 Release date: 2020-03-18 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural and Functional Basis of SARS-CoV-2 Entry by Using Human ACE2. Cell, 181, 2020
6M17	The 2019-nCoV RBD/ACE2-B0AT1 complex Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Yan, R.H, Zhang, Y.Y, Li, Y.N, Xia, L, Guo, Y.Y, Zhou, Q. Deposit date: 2020-02-24 Release date: 2020-03-11 Last modified: 2021-03-10 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Structural basis for the recognition of SARS-CoV-2 by full-length human ACE2. Science, 367, 2020
6M0J	Crystal structure of SARS-CoV-2 spike receptor-binding domain bound with ACE2 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, CHLORIDE ION, ... Authors: Wang, X, Lan, J, Ge, J, Yu, J, Shan, S. Deposit date: 2020-02-21 Release date: 2020-03-18 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Structure of the SARS-CoV-2 spike receptor-binding domain bound to the ACE2 receptor. Nature, 581, 2020
6VW1	Structure of SARS-CoV-2 chimeric receptor-binding domain complexed with its receptor human ACE2 Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Shang, J, Ye, G, Shi, K, Wan, Y.S, Aihara, H, Li, F. Deposit date: 2020-02-18 Release date: 2020-03-04 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (2.68 Å) Cite: Structural basis of receptor recognition by SARS-CoV-2. Nature, 581, 2020
8QSQ	Locally refined SARS-CoV-2 BA-2.86 Spike receptor binding domain (RBD) complexed with angiotensin converting enzyme 2 (ACE2) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, Spike protein S2' Authors: Ren, J, Stuart, D.I, Duyvesteyn, H.M.E. Deposit date: 2023-10-11 Release date: 2024-05-08 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: A structure-function analysis shows SARS-CoV-2 BA.2.86 balances antibody escape and ACE2 affinity. Cell Rep Med, 5, 2024
6X45	SARS-CoV2 spike glycoprotein N-terminal heptad repeat domain + SARS-CoV2(QEYKKEKE) Descriptor: Spike protein S2' Authors: Kreitler, D.F, Outlaw, V.K, Gellman, S.H. Deposit date: 2020-05-22 Release date: 2021-11-24 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Engineered peptides potently block entry of SARS-CoV-2 into human airway cells To Be Published
6XEY	Cryo-EM structure of the SARS-CoV-2 spike glycoprotein bound to Fab 2-4 Descriptor: 2-4 Heavy Chain, 2-4 Light Chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Rapp, M, Shapiro, L, Ho, D.D. Deposit date: 2020-06-14 Release date: 2020-07-22 Last modified: 2021-01-27 Method: ELECTRON MICROSCOPY (3.25 Å) Cite: Potent neutralizing antibodies against multiple epitopes on SARS-CoV-2 spike. Nature, 584, 2020
7P3D	MHC I A02 Allele presenting YLQPRTFLL Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Beta-2-microglobulin, ... Authors: Rizkallah, P.J, Sewell, A.K, Wall, A, Fuller, A. Deposit date: 2021-07-07 Release date: 2021-07-28 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.67 Å) Cite: Emergence of immune escape at dominant SARS-CoV-2 killer T cell epitope. Cell, 185, 2022
7P3E	MHC I A02 Allele presenting YLQLRTFLL Descriptor: Beta-2-microglobulin, DI(HYDROXYETHYL)ETHER, IODIDE ION, ... Authors: Rizkallah, P.J, Sewell, A.K, Wall, A, Fuller, A. Deposit date: 2021-07-07 Release date: 2021-07-28 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (2 Å) Cite: Emergence of immune escape at dominant SARS-CoV-2 killer T cell epitope. Cell, 185, 2022
7P40	P5C3 is a potent fab neutralizer Descriptor: Spike glycoprotein, Variable Heavy Chain P5C3 (VH), Variable Light Chain P5C3 (VL) Authors: perez, L. Deposit date: 2021-07-09 Release date: 2021-10-13 Last modified: 2023-04-12 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: A highly potent antibody effective against SARS-CoV-2 variants of concern. Cell Rep, 37, 2021
7P19	Crystal structure of SARS-CoV-2 RBD Q498Y complexed with human ACE2 Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ... Authors: Erausquin, E, Lopez-Sagaseta, J. Deposit date: 2021-07-01 Release date: 2022-07-13 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (3.24 Å) Cite: Structural bases for the higher adherence to ACE2 conferred by the SARS-CoV-2 spike Q498Y substitution. Acta Crystallogr D Struct Biol, 78, 2022
7PHG	MaP OF P5C3RBD Interface Descriptor: Heavy ChaIn variable, Light ChaIn, Surface glycoprotein Authors: Perez, L. Deposit date: 2021-08-17 Release date: 2021-10-13 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: A highly potent antibody effective against SARS-CoV-2 variants of concern. Cell Rep, 37, 2021
7PKI	Crystal structure of human ACE2 bound to the spike receptor-binding domain from a cave bat sarbecovirus closely related to SARS-CoV-2. Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Baquero, E, Rey, F.A. Deposit date: 2021-08-25 Release date: 2022-01-19 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (2.94234133 Å) Cite: Bat coronaviruses related to SARS-CoV-2 and infectious for human cells. Nature, 604, 2022
7PBE	Emergence of immune escape at dominant SARS-CoV-2 killer T-cell epitope Descriptor: Beta-2-microglobulin, DI(HYDROXYETHYL)ETHER, Human T-cell Receptor YLQ36, ... Authors: Rizkallah, P.J, Sewell, A.K, Wall, A, Fuller, A. Deposit date: 2021-08-02 Release date: 2022-04-27 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (3 Å) Cite: Emergence of immune escape at dominant SARS-CoV-2 killer T cell epitope. Cell, 185, 2022
8JJE	RBD of SARS-CoV2 spike protein with ACE2 decoy Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ... Authors: Kishikawa, J, Hirose, M, Kato, T, Okamoto, T. Deposit date: 2023-05-30 Release date: 2023-12-27 Last modified: 2024-10-09 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: An inhaled ACE2 decoy confers protection against SARS-CoV-2 infection in preclinical models. Sci Transl Med, 15, 2023
8JYP	Structure of SARS-CoV-2 XBB.1.5 spike RBD in complex with ACE2 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ... Authors: Yajima, H, Anraku, Y, Kita, S, Kimura, K, Sasaki, J, Sasaki-Tabata, K, Maenaka, K, Hashiguchi, T. Deposit date: 2023-07-03 Release date: 2024-01-03 Method: ELECTRON MICROSCOPY (3.38 Å) Cite: Virological characteristics of the SARS-CoV-2 XBB.1.5 variant To Be Published
8JYN	Structure of SARS-CoV-2 XBB.1.5 spike glycoprotein in complex with ACE2 (1-up state) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ... Authors: Yajima, H, Anraku, Y, Kita, S, Kimura, K, Sasaki, J, Sasaki-Tabata, K, Maenaka, K, Hashiguchi, T. Deposit date: 2023-07-03 Release date: 2024-01-03 Method: ELECTRON MICROSCOPY (3.04 Å) Cite: Virological characteristics of the SARS-CoV-2 XBB.1.5 variant To Be Published

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