PDB: 222624 resultsInfo pagesStatus searchChemie searchBIRD

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2H1E	Tandem chromodomains of budding yeast CHD1 Descriptor: Chromo domain protein 1 Authors: Flanagan IV, J.F, Khorasanizadeh, S. Deposit date: 2006-05-16 Release date: 2007-03-27 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Molecular Implications of Evolutionary Differences in CHD Double Chromodomains. J.Mol.Biol., 369, 2007
3PEY	S. cerevisiae Dbp5 bound to RNA and ADP BeF3 Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent RNA helicase DBP5, BERYLLIUM TRIFLUORIDE ION, ... Authors: Montpetit, B, Thomsen, N.D, Helmke, K.J, Seeliger, M.A, Berger, J.M, Weis, K. Deposit date: 2010-10-27 Release date: 2011-03-23 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.401 Å) Cite: A conserved mechanism of DEAD-box ATPase activation by nucleoporins and InsP(6) in mRNA export. Nature, 472, 2011
2ESO	Human Ubiquitin-Conjugating Enzyme (E2) UbcH5b mutant Ile37Ala Descriptor: Ubiquitin-conjugating enzyme E2 D2 Authors: Ozkan, E, Yu, H, Deisenhofer, J. Deposit date: 2005-10-26 Release date: 2005-12-06 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Mechanistic insight into the allosteric activation of a ubiquitin-conjugating enzyme by RING-type ubiquitin ligases Proc.Natl.Acad.Sci.Usa, 102, 2005
2R2H	Structure of S25-2 in Complex with Ko Descriptor: Fab, antibody fragment (IgG1k), heavy chain, ... Authors: Brooks, C.L, Evans, S.V. Deposit date: 2007-08-25 Release date: 2008-12-30 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (2 Å) Cite: Exploration of specificity in germline monoclonal antibody recognition of a range of natural and synthetic epitopes. J.Mol.Biol., 377, 2008
3PPH	Crystal structure of the Candida albicans methionine synthase by surface entropy reduction, threonine variant Descriptor: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Authors: Ubhi, D, Kavanagh, K, Monzingo, A.F, Robertus, J.D. Deposit date: 2010-11-24 Release date: 2011-10-12 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structure of Candida albicans methionine synthase determined by employing surface residue mutagenesis. Arch.Biochem.Biophys., 513, 2011
3PR9	Structural analysis of protein folding by the Methanococcus jannaschii chaperone FKBP26 Descriptor: FKBP-type peptidyl-prolyl cis-trans isomerase Authors: Martinez-Hackert, E, Hendrickson, W.A. Deposit date: 2010-11-29 Release date: 2011-01-19 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Structural Analysis of Protein Folding by the Long-Chain Archaeal Chaperone FKBP26. J.Mol.Biol., 407, 2011
4P6A	Crystal structure of a potent anti-HIV lectin actinohivin in complex with alpha-1,2-mannotriose Descriptor: Actinohivin, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose Authors: Zhang, F, Hoque, M.M, Suzuki, K, Tsunoda, M, Naomi, O, Tanaka, H, Takenaka, A. Deposit date: 2014-03-23 Release date: 2015-03-04 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.398 Å) Cite: The characteristic structure of anti-HIV actinohivin in complex with three HMTG D1 chains of HIV-gp120. Chembiochem, 15, 2014
3HA9	The 1.7A Crystal Structure of a Thioredoxin-like Protein from Aeropyrum pernix Descriptor: uncharacterized Thioredoxin-like protein Authors: Stein, A.J, Cuff, M.E, Sather, A, Hendricks, R, Freeman, L, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2009-05-01 Release date: 2009-05-19 Last modified: 2017-11-01 Method: X-RAY DIFFRACTION (1.7 Å) Cite: The 1.7A Crystal Structure of a Thioredoxin-like Protein from Aeropyrum pernix To be Published
4I1A	Crystal Structure of the Apo Form of RapI Descriptor: CHLORIDE ION, Response regulator aspartate phosphatase I Authors: Parashar, V, Jeffrey, P.D, Neiditch, M.B. Deposit date: 2012-11-20 Release date: 2013-04-03 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.443 Å) Cite: Conformational change-induced repeat domain expansion regulates rap phosphatase quorum-sensing signal receptors. Plos Biol., 11, 2013
2QDC	Crystal structure of the HePTP catalytic domain D236A mutant Descriptor: GLYCEROL, PHOSPHATE ION, Tyrosine-protein phosphatase non-receptor type 7 Authors: Critton, D.A, Tortajada, A, Page, R. Deposit date: 2007-06-20 Release date: 2008-06-24 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural basis of substrate recognition by hematopoietic tyrosine phosphatase. Biochemistry, 47, 2008
4I1W	2.00 Angstroms X-ray crystal structure of NAD- bound 2-aminomuconate 6-semialdehyde dehydrogenase from Pseudomonas fluorescens Descriptor: 2-aminomuconate 6-semialdehyde dehydrogenase, GLYCEROL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE Authors: Huo, L, Davis, I, Chen, L, Liu, A. Deposit date: 2012-11-21 Release date: 2014-05-21 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.992 Å) Cite: Crystallographic and spectroscopic snapshots reveal a dehydrogenase in action. Nat Commun, 6, 2015
3GLP	1.23 A resolution X-ray structure of (GCUGCUGC)2 Descriptor: 5'-R(*GP*CP*UP*GP*CP*UP*GP*C)-3', GLYCEROL, SULFATE ION Authors: Kiliszek, A, Kierzek, R, Krzyzosiak, W.J, Rypniewski, W. Deposit date: 2009-03-12 Release date: 2009-05-26 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.23 Å) Cite: Structural insights into CUG repeats containing the 'stretched U-U wobble': implications for myotonic dystrophy. Nucleic Acids Res., 37, 2009
2H6Y	Crystal Structure of Thioredoxin Mutant E48D in Hexagonal (p61) Space Group Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Thioredoxin Authors: Gavira, J.A, Godoy-Ruiz, R, Ibarra-Molero, B, Sanchez-Ruiz, J.M. Deposit date: 2006-06-01 Release date: 2007-05-15 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal Structure of Thioredoxin Mutant E48D in Hexagonal (p61) Space Group To be Published
2FH9	Structure and dimerization of the kinase domain from yeast Snf1 Descriptor: Snf1 kinase Authors: Nayak, V. Deposit date: 2005-12-23 Release date: 2006-03-28 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structure and Dimerization of the Kinase Domain from Yeast Snf1, a Member of the Snf1/AMPK Protein Family Structure, 14, 2006
5ROP	PanDDA analysis group deposition -- Proteinase K changed state model for fragment Frag Xtal Screen A12a at Room Temperature Descriptor: (2R)-(3-chlorophenyl)(hydroxy)ethanoic acid, Proteinase K, SULFATE ION Authors: Lima, G.M.A, Talibov, V, Benz, L.S, Jagudin, E, Mueller, U. Deposit date: 2020-09-23 Release date: 2021-05-26 Last modified: 2021-06-23 Method: X-RAY DIFFRACTION (1.64 Å) Cite: FragMAXapp: crystallographic fragment-screening data-analysis and project-management system. Acta Crystallogr D Struct Biol, 77, 2021
4I3U	Structure of phosphonoacetaldehyde dehydrogenase in complex with phosphonoacetaldehyde Descriptor: Aldehyde dehydrogenase (NAD+), PHOSPHONOACETALDEHYDE Authors: Nair, S.K, Agarwal, V. Deposit date: 2012-11-26 Release date: 2013-11-27 Last modified: 2019-07-17 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structure and function of phosphonoacetaldehyde dehydrogenase: the missing link in phosphonoacetate formation. Chem.Biol., 21, 2014
2QFK	X-ray Crystal Structure Analysis of the Binding Site in the Ferric and Oxyferrous Forms of the Recombinant Heme Dehaloperoxidase Cloned from Amphitrite ornata Descriptor: AMMONIUM ION, Dehaloperoxidase A, PROTOPORPHYRIN IX CONTAINING FE, ... Authors: de Serrano, V.S, Chen, Z, Davis, M.F, Franzen, S. Deposit date: 2007-06-27 Release date: 2008-07-08 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.62 Å) Cite: X-ray crystal structural analysis of the binding site in the ferric and oxyferrous forms of the recombinant heme dehaloperoxidase cloned from Amphitrite ornata Acta Crystallogr.,Sect.D, 63, 2007
4HVF	Crystal structure of green fluorescent protein lanGFP(Branchiostoma Lanceolatum) Descriptor: GLYCEROL, Green fluorescent protein blFP-Y6 Authors: Pletnev, V.Z, Pletneva, N.V, Pletnev, S.V. Deposit date: 2012-11-06 Release date: 2013-09-18 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structure of the red fluorescent protein from a lancelet (Branchiostoma lanceolatum): a novel GYG chromophore covalently bound to a nearby tyrosine. Acta Crystallogr.,Sect.D, 69, 2013
3PVZ	UDP-N-acetylglucosamine 4,6-dehydratase from Vibrio fischeri Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SODIUM ION, THIOCYANATE ION, ... Authors: Osipiuk, J, Marshall, N, Tesar, C, Pearson, L, Buck, K, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2010-12-07 Release date: 2011-01-12 Last modified: 2017-11-08 Method: X-RAY DIFFRACTION (2.1 Å) Cite: UDP-N-acetylglucosamine 4,6-dehydratase from Vibrio fischeri. To be Published
3H6K	Crystal Structure of Human 11-beta-hydroxysteroid-dehydrogenase Bound to an Ortho-chlro-sulfonyl-piperazine Inhibitor Descriptor: 3-chloro-4-({(2R)-4-[4-fluoro-2-(trifluoromethyl)phenyl]-2-methylpiperazin-1-yl}sulfonyl)benzamide, Corticosteroid 11-beta-dehydrogenase isozyme 1, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Bard, J, Svenson, K. Deposit date: 2009-04-23 Release date: 2009-12-01 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.187 Å) Cite: Efficacious 11beta-hydroxysteroid dehydrogenase type I inhibitors in the diet-induced obesity mouse model. J.Med.Chem., 52, 2009
3PWT	Crystal structure of mutant E.coli topoisomerase IA Descriptor: DNA topoisomerase, SULFATE ION Authors: Zhang, Z, Bokun, C, Tse-Dinh, Y.-C. Deposit date: 2010-12-08 Release date: 2010-12-29 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of mutant E.coli topoisomerase IA To be Published
3PX0	Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to DNA and dCTP-dA Mismatch (tautomer) in Closed Conformation Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*C*AP*TP*AP*GP*GP*AP*GP*TP*CP*AP*GP*G)-3'), DNA (5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DOC))-3'), ... Authors: Wang, W, Beese, L.S. Deposit date: 2010-12-09 Release date: 2011-10-19 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.73 Å) Cite: Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis. Proc.Natl.Acad.Sci.USA, 108, 2011
2QQM	Crystal Structure of the a2b1b2 Domains from Human Neuropilin-1 Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... Authors: Appleton, B.A, Wiesmann, C. Deposit date: 2007-07-26 Release date: 2007-11-20 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural studies of neuropilin/antibody complexes provide insights into semaphorin and VEGF binding Embo J., 26, 2007
4HY2	Crystal structure of Plk1 Polo-box domain in complex with PL-42 Descriptor: PL-42, Serine/threonine-protein kinase PLK1 Authors: Lee, W.C, Song, J.H, Kim, H.Y. Deposit date: 2012-11-12 Release date: 2013-04-03 Last modified: 2017-11-15 Method: X-RAY DIFFRACTION (2 Å) Cite: Development of cyclic peptomer inhibitors targeting the polo-box domain of polo-like kinase 1. Bioorg.Med.Chem., 21, 2013
2ESP	Human ubiquitin-conjugating enzyme (E2) UbcH5b mutant Ile88Ala Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, Ubiquitin-conjugating enzyme E2 D2 Authors: Ozkan, E, Yu, H, Deisenhofer, J. Deposit date: 2005-10-26 Release date: 2005-12-06 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.52 Å) Cite: Mechanistic insight into the allosteric activation of a ubiquitin-conjugating enzyme by RING-type ubiquitin ligases Proc.Natl.Acad.Sci.Usa, 102, 2005

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