PDB: 46984 resultsInfo pagesStatus searchChemie searchBIRD

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6W6P	MultiBody Refinement of 70S Ribosome from Enterococcus faecalis Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Jogl, G, Khayat, R. Deposit date: 2020-03-17 Release date: 2020-10-14 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis. Sci Rep, 10, 2020
3BZE	The human non-classical major histocompatibility complex molecule HLA-E Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, alpha chain E, ... Authors: Hoare, H.L, Sullivan, L.C, Ely, L.K, Beddoe, T, Henderson, K.N, Lin, J, Clements, C.S, Reid, H.H, Brooks, A.G, Rossjohn, J. Deposit date: 2008-01-17 Release date: 2008-04-29 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Subtle changes in peptide conformation profoundly affect recognition of the non-classical MHC class I molecule HLA-E by the CD94-NKG2 natural killer cell receptors J.Mol.Biol., 377, 2008
6VQ8	Mammalian V-ATPase from rat brain - composite model of rotational state 3 bound to ADP and SidK (built from focused refinement models) Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATPase H+-transporting V1 subunit A, ATPase H+-transporting V1 subunit D, ... Authors: Abbas, Y.M, Rubinstein, J.L. Deposit date: 2020-02-04 Release date: 2020-03-18 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Structure of V-ATPase from the mammalian brain. Science, 367, 2020
8Q5I	Structure of Candida albicans 80S ribosome in complex with cephaeline Descriptor: 18S ribosomal RNA, 25S rRNA, 40S ribosomal protein S0, ... Authors: Kolosova, O, Zgadzay, Y, Stetsenko, A, Atamas, A, Guskov, A, Yusupov, M. Deposit date: 2023-08-09 Release date: 2023-09-13 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (2.45 Å) Cite: Structural characterization of cephaeline binding to the eukaryotic ribosome using Cryo-Electron Microscopy Biopolym Cell, 2023
5GPN	Architecture of mammalian respirasome Descriptor: Acyl carrier protein, COPPER (II) ION, Cytochrome b, ... Authors: Gu, J, Wu, M, Guo, R, Yang, M. Deposit date: 2016-08-03 Release date: 2017-04-05 Last modified: 2017-04-12 Method: ELECTRON MICROSCOPY (5.4 Å) Cite: The architecture of the mammalian respirasome. Nature, 537, 2016
6CND	Yeast RNA polymerase III natural open complex (nOC) Descriptor: DNA (71-MER), DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, ... Authors: Han, Y, He, Y. Deposit date: 2018-03-08 Release date: 2018-08-22 Last modified: 2020-01-08 Method: ELECTRON MICROSCOPY (4.8 Å) Cite: Structural visualization of RNA polymerase III transcription machineries. Cell Discov, 4, 2018
6OZL	Crystal structure of Mus musculus (Mm) Endonuclease V in complex with a 23mer RNA oligo containing an inosine after a 2 min soak in Mn2+ Descriptor: DNA/RNA (5'-R(P*CP*GP*GP*UP*AP*AP*CP*CP*C)-D(P*I)-R(P*AP*UP*AP*UP*GP*CP*AP*UP*GP*CP*AP*UP*U)-3'), Endonuclease V, GLYCEROL, ... Authors: Samara, N.L, Yang, W. Deposit date: 2019-05-15 Release date: 2019-09-04 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Evolution of Inosine-Specific Endonuclease V from Bacterial DNase to Eukaryotic RNase. Mol.Cell, 76, 2019
6P1Z	Bacteriophage phiKZ gp163.1 PAAR repeat protein in complex with the C-terminal part of the T4 gp5 beta-helical domain Descriptor: 9-OCTADECENOIC ACID, Baseplate central spike complex protein gp5, MAGNESIUM ION, ... Authors: Buth, S.A, Shneider, M.M, Leiman, P.G. Deposit date: 2019-05-20 Release date: 2020-05-27 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.099 Å) Cite: Bacteriophage phiKZ gp163.1 PAAR repeat protein in complex with the C-terminal part of the T4 gp5 beta-helical domain To Be Published
6PB4	The E. coli class-II CAP-dependent transcription activation complex with de novo RNA transcript at the state 2 Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Liu, B, Shi, W. Deposit date: 2019-06-13 Release date: 2020-03-18 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (4.35 Å) Cite: Visualization of two architectures in class-II CAP-dependent transcription activation Plos Biol., 18, 2020
6CNB	Yeast RNA polymerase III initial transcribing complex Descriptor: DNA (71-MER), DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, ... Authors: Han, Y, He, Y. Deposit date: 2018-03-08 Release date: 2018-08-22 Last modified: 2020-01-08 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Structural visualization of RNA polymerase III transcription machineries. Cell Discov, 4, 2018
6OZK	Crystal structure of Mus musculus (Mm) Endonuclease V in complex with a 23mer RNA oligo containing an inosine after 68h soak in Ca2+ Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, DNA/RNA (5'-R(P*CP*GP*GP*UP*AP*AP*CP*CP*C)-D(P*I)-R(P*AP*UP*AP*UP*GP*CP*AP*UP*GP*CP*AP*UP*U)-3'), ... Authors: Samara, N.L, Yang, W. Deposit date: 2019-05-15 Release date: 2019-09-04 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.104 Å) Cite: Evolution of Inosine-Specific Endonuclease V from Bacterial DNase to Eukaryotic RNase. Mol.Cell, 76, 2019
6P78	queuine lyase from Clostridium spiroforme bound to SAM and queuine Descriptor: 2-amino-5-({[(1S,4S,5S)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-1,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, IRON/SULFUR CLUSTER, Queuine lyase, ... Authors: Almo, S.C, Grove, T.L. Deposit date: 2019-06-05 Release date: 2019-09-18 Last modified: 2019-12-18 Method: X-RAY DIFFRACTION (1.726 Å) Cite: Discovery of novel bacterial queuine salvage enzymes and pathways in human pathogens. Proc.Natl.Acad.Sci.USA, 116, 2019
6WM4	Human V-ATPase in state 3 with SidK and ADP Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-DIPHOSPHATE, Renin receptor, ... Authors: Wang, L, Wu, H, Fu, T.M. Deposit date: 2020-04-20 Release date: 2020-11-11 Last modified: 2020-11-18 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Structures of a Complete Human V-ATPase Reveal Mechanisms of Its Assembly. Mol.Cell, 80, 2020
6P8V	Structure of E. coli MS115-1 HORMA:CdnC:Trip13 complex Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATPase, AAA family, ... Authors: Ye, Q, Corbett, K.D. Deposit date: 2019-06-08 Release date: 2019-12-25 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.64 Å) Cite: HORMA Domain Proteins and a Trip13-like ATPase Regulate Bacterial cGAS-like Enzymes to Mediate Bacteriophage Immunity. Mol.Cell, 77, 2020
3CJT	Ribosomal protein L11 methyltransferase (PrmA) in complex with dimethylated ribosomal protein L11 Descriptor: 1,2-ETHANEDIOL, 50S ribosomal protein L11, CHLORIDE ION, ... Authors: Demirci, H, Gregory, S.T, Dahlberg, A.E, Jogl, G. Deposit date: 2008-03-13 Release date: 2008-05-20 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Multiple-Site Trimethylation of Ribosomal Protein L11 by the PrmA Methyltransferase. Structure, 16, 2008
6P22	Photorhabdus Virulence Cassette (PVC) PAAR repeat protein Pvc10 in complex with a T4 gp5 beta-helix fragment modified to mimic Pvc8, the central spike protein of PVC Descriptor: 9-OCTADECENOIC ACID, CHIMERA OF CENTRAL SPIKE PROTEINS GP5 FROM PHAGE T4 AND PVC8 FROM PVC, MAGNESIUM ION, ... Authors: Buth, S.A, Shneider, M.M, Leiman, P.G. Deposit date: 2019-05-20 Release date: 2020-05-27 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.291 Å) Cite: Photorhabdus Virulence Cassette (PVC) PAAR repeat protein Pvc10 in complex with a T4 gp5 beta-helix fragment modified to mimic Pvc8, the central spike protein of PVC To Be Published
6P2A	Chimera of bacteriophage OBP gp146 central spike protein and a T4 gp5 beta-helix fragment Descriptor: 9-OCTADECENOIC ACID, CHIMERA OF BACTERIOPHAGE OBP GP146 AND A T4 GP5, FE (II) ION, ... Authors: Buth, S.A, Shneider, M.M, Leiman, P.G. Deposit date: 2019-05-21 Release date: 2020-05-27 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Chimera of bacteriophage OBP gp146 central spike protein and a T4 gp5 beta-helix fragment To Be Published
5GM6	Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolution Descriptor: ADENOSINE-5'-DIPHOSPHATE, Cold sensitive U2 snRNA suppressor 1, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Yan, C, Wan, R, Bai, R, Huang, G, Shi, Y. Deposit date: 2016-07-12 Release date: 2016-09-21 Last modified: 2019-11-06 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Structure of a yeast activated spliceosome at 3.5 angstrom resolution Science, 353, 2016
5GMK	Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution Descriptor: 5'-Exon, 5'-Splicing Site, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Wan, R, Yan, C, Bai, R, Huang, G, Shi, Y. Deposit date: 2016-07-14 Release date: 2016-08-17 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structure of a yeast catalytic step I spliceosome at 3.4 angstrom resolution Science, 353, 2016
6PB5	The E. coli class-II CAP-dependent transcription activation complex at the state 1 architecture Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Liu, B, Shi, W. Deposit date: 2019-06-13 Release date: 2020-03-18 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (4.52 Å) Cite: Visualization of two architectures in class-II CAP-dependent transcription activation Plos Biol., 18, 2020
6PQV	E. coli ATP Synthase State 1e Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ... Authors: Stewart, A.G, Sobti, M, Walshe, J.L. Deposit date: 2019-07-10 Release date: 2020-06-03 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Cryo-EM structures provide insight into how E. coli F1FoATP synthase accommodates symmetry mismatch. Nat Commun, 11, 2020
6PCV	Single Particle Reconstruction of Phosphatidylinositol (3,4,5) trisphosphate-dependent Rac exchanger 1 bound to G protein beta gamma subunits Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Phosphatidylinositol (3,4,5) trisphosphate-dependent Rac exchanger 1 Authors: Cash, J.N, Cianfrocco, M.A, Tesmer, J.J.G. Deposit date: 2019-06-18 Release date: 2019-10-23 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Cryo-electron microscopy structure and analysis of the P-Rex1-G beta gamma signaling scaffold. Sci Adv, 5, 2019
6CNC	Yeast RNA polymerase III open complex Descriptor: DNA (71-MER), DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, ... Authors: Han, Y, He, Y. Deposit date: 2018-03-08 Release date: 2018-08-22 Last modified: 2020-01-08 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Structural visualization of RNA polymerase III transcription machineries. Cell Discov, 4, 2018
6WZ9	Bridging of double-strand DNA break activates PARP2/HPF1 to modify chromatin Descriptor: DNA, Histone H2A, Histone H2B 1.1, ... Authors: Halic, M, Bilokapic, S. Deposit date: 2020-05-13 Release date: 2020-09-16 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Bridging of DNA breaks activates PARP2-HPF1 to modify chromatin. Nature, 585, 2020
6CNF	Yeast RNA polymerase III elongation complex Descriptor: DNA (79-MER), DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, ... Authors: Han, Y, He, Y. Deposit date: 2018-03-08 Release date: 2018-08-22 Last modified: 2020-01-08 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Structural visualization of RNA polymerase III transcription machineries. Cell Discov, 4, 2018

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