PDB: 73665 resultsInfo pagesStatus searchChemie searchBIRD

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6YWS	The structure of the large subunit of the mitoribosome from Neurospora crassa Descriptor: 50S ribosomal protein L14, 50S ribosomal protein L17, 50S ribosomal protein L24, ... Authors: Amunts, A, Itoh, Y, Naschberger, A. Deposit date: 2020-04-30 Release date: 2020-11-11 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (2.74 Å) Cite: Analysis of translating mitoribosome reveals functional characteristics of translation in mitochondria of fungi. Nat Commun, 11, 2020
6YWV	The structure of the Atp25 bound assembly intermediate of the mitoribosome from Neurospora crassa Descriptor: 23 S rRNA, 50S ribosomal protein L14, 50S ribosomal protein L17, ... Authors: Amunts, A, Itoh, Y, Naschberger, A. Deposit date: 2020-04-30 Release date: 2020-11-11 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.03 Å) Cite: Analysis of translating mitoribosome reveals functional characteristics of translation in mitochondria of fungi. Nat Commun, 11, 2020
6LBJ	Structure of mouse GLD-2 (Terminal nucleotidyltransferase 2, TENT2) Descriptor: Poly(A) RNA polymerase GLD2 Authors: Ma, X.Y, Gao, S. Deposit date: 2019-11-14 Release date: 2020-07-22 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.70444059 Å) Cite: Structures of mammalian GLD-2 proteins reveal molecular basis of their functional diversity in mRNA and microRNA processing. Nucleic Acids Res., 48, 2020
6LBK	Structure of rat GLD-2 (Terminal nucleotidyltransferase 2, TENT2) Descriptor: Poly(A) RNA polymerase GLD2 Authors: Ma, X.Y, Gao, S. Deposit date: 2019-11-14 Release date: 2020-07-22 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.4956882 Å) Cite: Structures of mammalian GLD-2 proteins reveal molecular basis of their functional diversity in mRNA and microRNA processing. Nucleic Acids Res., 48, 2020
3J0D	Models for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complex Descriptor: 30S ribosomal protein S12, 50S ribosomal protein L11, Ribosome-recycling factor, ... Authors: Yokoyama, T, Shaikh, T.R, Iwakura, N, Kaji, H, Kaji, A, Agrawal, R.K. Deposit date: 2011-06-29 Release date: 2012-04-25 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (11.1 Å) Cite: Structural insights into initial and intermediate steps of the ribosome-recycling process. Embo J., 31, 2012
6WMP	F. tularensis RNAPs70-iglA DNA complex Descriptor: DNA NT-strand, DNA T-strand, DNA-directed RNA polymerase subunit alpha 1, ... Authors: Travis, B.A, Brennan, R.G, Schumacher, M.A. Deposit date: 2020-04-21 Release date: 2020-11-11 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (2.98 Å) Cite: Structural Basis for Virulence Activation of Francisella tularensis. Mol.Cell, 81, 2021
6T0R	Bat Influenza A polymerase product dissociation complex using 44-mer vRNA template with mutated oligo(U) sequence Descriptor: Polymerase acidic protein, Polymerase basic protein 2, RNA-directed RNA polymerase catalytic subunit, ... Authors: Wandzik, J.M, Kouba, T, Cusack, S. Deposit date: 2019-10-03 Release date: 2020-04-15 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (2.82 Å) Cite: A Structure-Based Model for the Complete Transcription Cycle of Influenza Polymerase. Cell, 181, 2020
6T0U	Bat Influenza A polymerase product dissociation complex using 44-mer vRNA template with intact oligo(U) sequence Descriptor: Polymerase acidic protein, Polymerase basic protein 2, RNA-directed RNA polymerase catalytic subunit, ... Authors: Wandzik, J.M, Kouba, T, Cusack, S. Deposit date: 2019-10-03 Release date: 2020-04-15 Last modified: 2024-09-25 Method: ELECTRON MICROSCOPY (3.12 Å) Cite: A Structure-Based Model for the Complete Transcription Cycle of Influenza Polymerase. Cell, 181, 2020
7EGQ	Co-transcriptional capping machineries in SARS-CoV-2 RTC: Coupling of N7-methyltransferase and 3'-5' exoribonuclease with polymerase reveals mechanisms for capping and proofreading Descriptor: Helicase, MAGNESIUM ION, Non-structural protein 10, ... Authors: Yan, L.M, Yang, Y.X, Li, M.Y, Zhang, Y, Zheng, L.T, Ge, J, Huang, Y.C, Liu, Z.Y, Wang, T, Gao, S, Zhang, R, Huang, Y.Y, Guddat, L.W, Gao, Y, Rao, Z.H, Lou, Z.Y. Deposit date: 2021-03-25 Release date: 2021-07-21 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.35 Å) Cite: Coupling of N7-methyltransferase and 3'-5' exoribonuclease with SARS-CoV-2 polymerase reveals mechanisms for capping and proofreading. Cell, 184, 2021
1N8R	Structure of large ribosomal subunit in complex with virginiamycin M Descriptor: 23S ribosomal RNA, 50S ribosomal protein L10e, 50S ribosomal protein L13P, ... Authors: Hansen, J.L, Moore, P.B, Steitz, T.A. Deposit date: 2002-11-21 Release date: 2003-07-22 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (3 Å) Cite: Structures of Five Antibiotics Bound at the Peptidyl Transferase Center of the Large Ribosomal Subunit J.Mol.Biol., 330, 2003
1NJI	Structure of chloramphenicol bound to the 50S ribosomal subunit Descriptor: 23S ribosomal RNA, 50S ribosomal protein L10e, 50S ribosomal protein L13P, ... Authors: Hansen, J.L, Moore, P.B, Steitz, T.A. Deposit date: 2002-12-31 Release date: 2003-07-22 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (3 Å) Cite: Structures of Five Antibiotics Bound at the Peptidyl Transferase Center of the Large Ribosomal Subunit J.Mol.Biol., 330, 2003
4WQ5	YgjD(V85E)-YeaZ heterodimer in complex with ATP Descriptor: ACETATE ION, ADENOSINE-5'-TRIPHOSPHATE, FE (III) ION, ... Authors: Zhang, W. Deposit date: 2014-10-21 Release date: 2015-01-28 Last modified: 2015-02-25 Method: X-RAY DIFFRACTION (2.33 Å) Cite: The ATP-mediated formation of the YgjD-YeaZ-YjeE complex is required for the biosynthesis of tRNA t6A in Escherichia coli. Nucleic Acids Res., 43, 2015
6KR6	Crystal structure of Drosophila Piwi Descriptor: MERCURY (II) ION, Protein piwi, ZINC ION, ... Authors: Yamaguchi, S, Oe, A, Yamashita, K, Hirano, S, Mastumoto, N, Ishitani, R, Nishimasu, H, Nureki, O. Deposit date: 2019-08-21 Release date: 2020-02-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Crystal structure of Drosophila Piwi. Nat Commun, 11, 2020
8AXV	Structure of an open form of CHIKV nsP1 capping pores Descriptor: 2-amino-7-methyl-1,7-dihydro-6H-purin-6-one, ZINC ION, mRNA-capping enzyme nsP1 Authors: Reguera, J, Jones, R, Hons, M. Deposit date: 2022-09-01 Release date: 2023-03-29 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Structural basis and dynamics of Chikungunya alphavirus RNA capping by nsP1 capping pores. Proc.Natl.Acad.Sci.USA, 120, 2023
8AOX	CryoEM structure of the Chikungunya virus nsP1 capping pores in complex with SAM Descriptor: S-ADENOSYLMETHIONINE, ZINC ION, mRNA-capping enzyme nsP1 Authors: Jones, R, Hons, M, Reguera, J. Deposit date: 2022-08-08 Release date: 2023-03-29 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Structural basis and dynamics of Chikungunya alphavirus RNA capping by nsP1 capping pores. Proc.Natl.Acad.Sci.USA, 120, 2023
8AOW	CryoEM structure of the Chikungunya virus nsP1 capping pores in complex with m7GTP and SAH ligands Descriptor: 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, S-ADENOSYL-L-HOMOCYSTEINE, ... Authors: Jones, R, Hons, M, Reguera, J. Deposit date: 2022-08-08 Release date: 2023-03-29 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Structural basis and dynamics of Chikungunya alphavirus RNA capping by nsP1 capping pores. Proc.Natl.Acad.Sci.USA, 120, 2023
8AOV	CryoEM structure of the Chikungunya virus nsP1 capping pores in complex with GTP Descriptor: GUANOSINE-5'-TRIPHOSPHATE, ZINC ION, mRNA-capping enzyme nsP1 Authors: Jones, R, Hons, M, Reguera, J. Deposit date: 2022-08-08 Release date: 2023-05-31 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (2.48 Å) Cite: Structural basis and dynamics of Chikungunya alphavirus RNA capping by nsP1 capping pores. Proc.Natl.Acad.Sci.USA, 120, 2023
1DD5	CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA RIBOSOME RECYCLING FACTOR, RRF Descriptor: ACETIC ACID, RIBOSOME RECYCLING FACTOR Authors: Selmer, M, Al-Karadaghi, S, Hirokawa, G, Kaji, A, Liljas, A. Deposit date: 1999-11-08 Release date: 1999-12-22 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Crystal structure of Thermotoga maritima ribosome recycling factor: a tRNA mimic. Science, 286, 1999
1Q86	Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit. Descriptor: 23S ribosomal rna, 50S ribosomal protein L13P, 50S ribosomal protein L14P, ... Authors: Hansen, J.L, Schmeing, T.M, Moore, P.B, Steitz, T.A. Deposit date: 2003-08-20 Release date: 2003-10-07 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural insights into peptide bond formation. Proc.Natl.Acad.Sci.USA, 99, 2002
6CBD	Crystal Structure of Human Argonaute2 Bound to Three Tryptophans Descriptor: Guide RNA, ISOPROPYL ALCOHOL, MAGNESIUM ION, ... Authors: Sheu-Gruttadauria, J, MacRae, I.J. Deposit date: 2018-02-02 Release date: 2018-04-18 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.203 Å) Cite: Phase Transitions in the Assembly and Function of Human miRISC. Cell, 173, 2018
8WHX	Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH. Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Kumar, N, Sharma, S, Kaushal, P.S. Deposit date: 2023-09-23 Release date: 2024-02-28 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Cryo- EM structure of the mycobacterial 70S ribosome in complex with ribosome hibernation promotion factor RafH. Nat Commun, 15, 2024
8WI7	Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH. Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Kumar, N, Sharma, S, Kaushal, P.S. Deposit date: 2023-09-24 Release date: 2024-02-28 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Cryo- EM structure of the mycobacterial 70S ribosome in complex with ribosome hibernation promotion factor RafH. Nat Commun, 15, 2024
7ELL	In situ structure of capping enzyme lambda2, penetration protein mu1 of mammalian reovirus capsid asymmetric unit. Descriptor: MYRISTIC ACID, Mu1, mRNA (guanine-N(7)-)-methyltransferase Authors: Zhou, Z.H, Pan, M. Deposit date: 2021-04-12 Release date: 2021-10-20 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Asymmetric reconstruction of mammalian reovirus reveals interactions among RNA, transcriptional factor mu2 and capsid proteins. Nat Commun, 12, 2021
3J0E	Models for the T. thermophilus ribosome recycling factor and the E. coli elongation factor G bound to the E. coli post-termination complex Descriptor: 30S ribosomal protein S12, Elongation factor G, Ribosome-recycling factor, ... Authors: Yokoyama, T, Shaikh, T.R, Iwakura, N, Kaji, H, Kaji, A, Agrawal, R.K. Deposit date: 2011-06-29 Release date: 2012-04-25 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (9.9 Å) Cite: Structural insights into initial and intermediate steps of the ribosome-recycling process. Embo J., 31, 2012
7EIZ	Coupling of N7-methyltransferase and 3'-5' exoribonuclease with SARS-CoV-2 polymerase reveals mechanisms for capping and proofreading Descriptor: Helicase, MAGNESIUM ION, Non-structural protein 10, ... Authors: Yan, L, Yang, Y.X, Li, M.Y, Zhang, Y, Zheng, L.T, Ge, J, Huang, Y.C, Liu, Z.Y, Wang, T, Gao, S, Zhang, R, Huang, Y.Y, Guddat, L.W, Gao, Y, Rao, Z.H, Lou, Z.Y. Deposit date: 2021-04-01 Release date: 2021-09-22 Last modified: 2023-07-26 Method: ELECTRON MICROSCOPY Cite: Coupling of N7-methyltransferase and 3'-5' exoribonuclease with SARS-CoV-2 polymerase reveals mechanisms for capping and proofreading Cell, 184, 2021

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