Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

4UWC
DownloadVisualize
BU of 4uwc by Molmil
Fibroblast growth factor receptor 1 kinase in complex with JK-P3
Descriptor: 1,2-ETHANEDIOL, 3,4-dimethoxy-N-(5-phenyl-1H-pyrazol-3-yl)benzamide, FIBROBLAST GROWTH FACTOR RECEPTOR 1, ...
Authors:Beeston, H, Tucker, J, Kankanala, J.
Deposit date:2014-08-11
Release date:2015-09-02
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Validation of IMS-MS as a screening tool to identify type II kinase inhibitors of FGFR1 kinase.
Rapid Commun Mass Spectrom, 2021
6PRU
DownloadVisualize
BU of 6pru by Molmil
Photoconvertible crystals of PixJ from Thermosynechococcus elongatus
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Burgie, E.S, Clinger, J.A, Miller, M.D, Phillips Jr, G.N, Vierstra, R.D.
Deposit date:2019-07-11
Release date:2019-12-18
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.539 Å)
Cite:Photoreversible interconversion of a phytochrome photosensory module in the crystalline state.
Proc.Natl.Acad.Sci.USA, 117, 2020
8SZD
DownloadVisualize
BU of 8szd by Molmil
Crystal structure of Yersinia pestis dihydrofolate reductase at 1.25-A resolution
Descriptor: CHLORIDE ION, Dihydrofolate reductase, MAGNESIUM ION, ...
Authors:Shaw, G.X, Cherry, S, Tropea, J.E, Waugh, D.S, Ji, X.
Deposit date:2023-05-29
Release date:2023-06-07
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Crystal structure of Yersinia pestis dihydrofolate reductase at 1.25-A resolution
To be published
8SZE
DownloadVisualize
BU of 8sze by Molmil
Crystal structure of Yersinia pestis dihydrofolate reductase in complex with Trimethoprim
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Dihydrofolate reductase, ...
Authors:Shaw, G.X, Cherry, S, Tropea, J.E, Waugh, D.S, Ji, X.
Deposit date:2023-05-29
Release date:2023-06-07
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of Yersinia pestis dihydrofolate reductase in complex with Trimethoprim
To be published
4W1X
DownloadVisualize
BU of 4w1x by Molmil
Crystal structure of 7,8-diaminopelargonic acid synthase (BioA) from Mycobacterium tuberculosis, complexed with 1-(4-(4-(3-chlorobenzoyl)piperazin-1-yl)phenyl)ethanone
Descriptor: 1,2-ETHANEDIOL, 1-{4-[4-(3-chlorobenzoyl)piperazin-1-yl]phenyl}ethanone, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, ...
Authors:Finzel, B.C, Dai, R.
Deposit date:2014-08-13
Release date:2015-02-04
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Target-Based Identification of Whole-Cell Active Inhibitors of Biotin Biosynthesis in Mycobacterium tuberculosis.
Chem.Biol., 22, 2015
8QZD
DownloadVisualize
BU of 8qzd by Molmil
Soluble epoxide hydrolase in complex with Epoxykinin
Descriptor: 1,2-ETHANEDIOL, 2-[5-bromanyl-3-[2,2,2-tris(fluoranyl)ethanoyl]indol-1-yl]-N-cycloheptyl-ethanamide, BROMIDE ION, ...
Authors:Kumar, A, Ehrler, J.M.H, Ziegler, S, Doetsch, L, Proschak, E, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2023-10-27
Release date:2024-02-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Discovery of the sEH Inhibitor Epoxykynin as a Potent Kynurenine Pathway Modulator.
J.Med.Chem., 67, 2024
4UXM
DownloadVisualize
BU of 4uxm by Molmil
Crystal Structure of Struthiocalcin-1, a different crystal form.
Descriptor: (4-CARBOXYPHENYL)(CHLORO)MERCURY, STRUTHIOCALCIN-1
Authors:Ruiz-Arellano, R.R, Moreno, A, Romero, A.
Deposit date:2014-08-26
Release date:2015-04-08
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal Structure of Struthiocalcin-1, an Intramineral Protein from Struthio Camelus Eggshell, in Two Different Crystal Forms.
Acta Crystallogr.,Sect.D, 71, 2015
6NCP
DownloadVisualize
BU of 6ncp by Molmil
Crystal structure of HIV-1 broadly neutralizing antibody ACS202
Descriptor: ACS202 Fab heavy chain, ACS202 Fab light chain, GLYCINE, ...
Authors:Yuan, M, Wilson, I.A.
Deposit date:2018-12-11
Release date:2019-06-19
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Conformational Plasticity in the HIV-1 Fusion Peptide Facilitates Recognition by Broadly Neutralizing Antibodies.
Cell Host Microbe, 25, 2019
8QUX
DownloadVisualize
BU of 8qux by Molmil
Hexameric HIV-1 CA in complex with DDD00100333
Descriptor: 1,2-ETHANEDIOL, 4-benzyl-3,4-dihydroquinoxalin-2(1H)-one, Spacer peptide 1
Authors:Petit, A.P, Fyfe, P.K.
Deposit date:2023-10-17
Release date:2024-03-27
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Application of an NMR/Crystallography Fragment Screening Platform for the Assessment and Rapid Discovery of New HIV-CA Binding Fragments.
Chemmedchem, 19, 2024
8QYE
DownloadVisualize
BU of 8qye by Molmil
Catalytic core of endo-alpha-N-acetylgalactosaminidase from Bifidobacterium longum (EngBF) concieved by deep network hallucination: dEngBF4
Descriptor: 1,2-ETHANEDIOL, ENDO-ALPHA-N-ACETYLGALACTOSAMINIDASE
Authors:Aghajari, N.
Deposit date:2023-10-25
Release date:2024-03-06
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Carving out a Glycoside Hydrolase Active Site for Incorporation into a New Protein Scaffold Using Deep Network Hallucination.
Acs Synth Biol, 13, 2024
6VNS
DownloadVisualize
BU of 6vns by Molmil
Crystal structure of TYK2 kinase with compound 13
Descriptor: (1R,2R)-2-cyano-N-[(1S,5R)-3-(5-fluoro-2-{[1-(2-hydroxyethyl)-1H-pyrazol-4-yl]amino}pyrimidin-4-yl)-3-azabicyclo[3.1.0]hexan-1-yl]cyclopropane-1-carboxamide, Non-receptor tyrosine-protein kinase TYK2
Authors:Vajdos, F.F.
Deposit date:2020-01-29
Release date:2020-04-08
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Design and optimization of a series of 4-(3-azabicyclo[3.1.0]hexan-3-yl)pyrimidin-2-amines: Dual inhibitors of TYK2 and JAK1.
Bioorg.Med.Chem., 28, 2020
8Y2M
DownloadVisualize
BU of 8y2m by Molmil
Cryo-EM structure of the FB1-bound Lac1-Lip1 complex
Descriptor: (2~{R})-2-[2-[(5~{R},6~{R},7~{S},9~{S},11~{R},16~{R},18~{S},19~{S})-19-azanyl-6-[(3~{R})-3-carboxy-5-oxidanyl-5-oxidanylidene-pentanoyl]oxy-5,9-dimethyl-11,16,18-tris(oxidanyl)icosan-7-yl]oxy-2-oxidanylidene-ethyl]butanedioic acid, (4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE, Ceramide synthase LAC1, ...
Authors:Xie, T, Zhang, Z, Fang, Q, Gong, X.
Deposit date:2024-01-26
Release date:2024-11-27
Last modified:2025-07-16
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:Mechanism of ceramide synthase inhibition by fumonisin B 1.
Structure, 32, 2024
8QBH
DownloadVisualize
BU of 8qbh by Molmil
AntI in complex with 1-Naphthol
Descriptor: 1-NAPHTHOL, Photorhabdus luminescens subsp. laumondii TTO1 complete genome segment 15/17
Authors:Schmalhofer, M, Vagstad, A.L, Zhou, Q, Bode, H.B, Groll, M.
Deposit date:2023-08-24
Release date:2024-03-13
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Polyketide Trimming Shapes Dihydroxynaphthalene-Melanin and Anthraquinone Pigments.
Adv Sci, 11, 2024
8CCW
DownloadVisualize
BU of 8ccw by Molmil
Crystal structure of human Sirt3 in complex with an acetylated HIV1 Tat-46-54 substrate peptide
Descriptor: NAD-dependent protein deacetylase sirtuin-3, mitochondrial, Protein Tat, ...
Authors:Adolph, R.S, Steegborn, C.
Deposit date:2023-01-27
Release date:2023-05-10
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Molecular Mechanism of Sirtuin 1 Inhibition by Human Immunodeficiency Virus 1 Tat Protein.
Life, 13, 2023
8Y2N
DownloadVisualize
BU of 8y2n by Molmil
Cryo-EM structure of the apo Lac1-Lip1 complex
Descriptor: (4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE, Ceramide synthase LAC1, Ceramide synthase subunit LIP1
Authors:Xie, T, Zhang, Z, Fang, Q, Gong, X.
Deposit date:2024-01-26
Release date:2024-11-27
Last modified:2025-07-23
Method:ELECTRON MICROSCOPY (3.19 Å)
Cite:Mechanism of ceramide synthase inhibition by fumonisin B 1.
Structure, 32, 2024
8CR0
DownloadVisualize
BU of 8cr0 by Molmil
Crystal structure of human carbonic anhydrase II in complex with a triazolyl benzoxaborole inhibitor
Descriptor: 1-[1,1-bis(oxidanyl)-3~{H}-2,1$l^{4}-benzoxaborol-6-yl]-4-[(4-fluoranylphenoxy)methyl]-1,2,3-triazole, Carbonic anhydrase 2, DIMETHYL SULFOXIDE, ...
Authors:Alterio, V, De Simone, G, Esposito, D.
Deposit date:2023-03-07
Release date:2023-06-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:6-Substituted Triazolyl Benzoxaboroles as Selective Carbonic Anhydrase Inhibitors: In Silico Design, Synthesis, and X-ray Crystallography.
J.Med.Chem., 66, 2023
7OCQ
DownloadVisualize
BU of 7ocq by Molmil
NADH bound to the dehydrogenase domain of the bifunctional mannitol-1-phosphate dehydrogenase/phosphatase MtlD from Acinetobacter baumannii
Descriptor: 1,2-ETHANEDIOL, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Tam, H.K, Mueller, V, Pos, K.M.
Deposit date:2021-04-28
Release date:2022-04-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Unidirectional mannitol synthesis of Acinetobacter baumannii MtlD is facilitated by the helix-loop-helix-mediated dimer formation.
Proc.Natl.Acad.Sci.USA, 119, 2022
8W4E
DownloadVisualize
BU of 8w4e by Molmil
Crystal structure of the sigma-1 receptor from Xenopus laevis in the absence of known ligands (C2 form)
Descriptor: Sigma non-opioid intracellular receptor 1
Authors:Xiao, Y, Fu, C, Sun, Z, Zhou, X.
Deposit date:2023-08-23
Release date:2024-07-17
Method:X-RAY DIFFRACTION (2.805 Å)
Cite:Insight into binding of endogenous neurosteroid ligands to the sigma-1 receptor.
Nat Commun, 15, 2024
6PYH
DownloadVisualize
BU of 6pyh by Molmil
Cryo-EM structure of full-length IGF1R-IGF1 complex. Only the extracellular region of the complex is resolved.
Descriptor: Insulin-like growth factor 1 receptor, Insulin-like growth factor I
Authors:Li, J, Choi, E, Yu, H.T, Bai, X.C.
Deposit date:2019-07-29
Release date:2019-10-23
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structural basis of the activation of type 1 insulin-like growth factor receptor.
Nat Commun, 10, 2019
8CN1
DownloadVisualize
BU of 8cn1 by Molmil
hDLG1-PDZ1 in complex with a TAX1 peptide from HTLV-1
Descriptor: Disks large homolog 1, GLU-THR-GLU-VAL, SULFATE ION
Authors:Maseko, S, Sogues, A, Volkov, A, Remaut, H, Twizere, J.C.
Deposit date:2023-02-21
Release date:2023-08-02
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Identification of small molecule antivirals against HTLV-1 by targeting the hDLG1-Tax-1 protein-protein interaction.
Antiviral Res., 217, 2023
6VNX
DownloadVisualize
BU of 6vnx by Molmil
Crystal structure of TYK2 kinase with compound 19
Descriptor: (1S)-2,2-difluoro-N-[(1S,5R,6R)-3-{5-fluoro-2-[(1-methyl-1H-pyrazol-4-yl)amino]pyrimidin-4-yl}-6-methyl-3-azabicyclo[3.1.0]hexan-1-yl]cyclopropane-1-carboxamide, Non-receptor tyrosine-protein kinase TYK2
Authors:Vajdos, F.F.
Deposit date:2020-01-29
Release date:2020-04-08
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Design and optimization of a series of 4-(3-azabicyclo[3.1.0]hexan-3-yl)pyrimidin-2-amines: Dual inhibitors of TYK2 and JAK1.
Bioorg.Med.Chem., 28, 2020
8CIJ
DownloadVisualize
BU of 8cij by Molmil
CRYSTAL STRUCTURE OF HUMAN HPK1 (MAP4K1) COMPLEX WITH 2-[8-Amino-7-fluoro-6-(8-methyl-2,3-dihydro-1H-pyrido[2,3-b][1,4]oxazin-7-yl)-isoquinolin-3-ylamino]-6-isopropyl-5,6-dihydro-4H-1,6,8a-triaza-azulen-7-one
Descriptor: 2-[[8-azanyl-7-fluoranyl-6-(8-methyl-2,3-dihydro-1~{H}-pyrido[2,3-b][1,4]oxazin-7-yl)isoquinolin-3-yl]amino]-6-propan-2-yl-5,8-dihydro-4~{H}-pyrazolo[1,5-d][1,4]diazepin-7-one, Mitogen-activated protein kinase kinase kinase kinase 1
Authors:Musil, D, Toure, M.
Deposit date:2023-02-09
Release date:2023-08-16
Method:X-RAY DIFFRACTION (2.821 Å)
Cite:Discovery of quinazoline HPK1 inhibitors with high cellular potency.
Bioorg.Med.Chem., 92, 2023
6O3F
DownloadVisualize
BU of 6o3f by Molmil
Crystal Structure of Lysyl-tRNA Synthetase from Chlamydia trachomatis with complexed with L-lysine and a difluoro cyclohexyl chromone ligand
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, LYSINE, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2019-02-26
Release date:2019-03-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of Lysyl-tRNA Synthetase from Chlamydia trachomatis with complexed with L-lysine and a difluoro cyclohexyl chromone ligand
to be published
4WHF
DownloadVisualize
BU of 4whf by Molmil
Crystal Structure of TR3 LBD in complex with 1-(3,4,5-trihydroxyphenyl)decan-1-one
Descriptor: 1-(3,4,5-trihydroxyphenyl)decan-1-one, GLYCEROL, Nuclear receptor subfamily 4 group A member 1
Authors:Li, F.W, Cai, Q.X, Li, A.Z, Tian, X.Y, Wang, W.J, Wang, Y, Hou, P.P, Wu, Q, Lin, T.W.
Deposit date:2014-09-22
Release date:2015-09-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Induction of Autophagic Death in Cancer Cells by Agonizing TR3 and Attenuating Akt2 Activity
Chem.Biol., 22, 2015
8QA7
DownloadVisualize
BU of 8qa7 by Molmil
Crystal structure of HDAC6 catalytic domain 2 from zebrafish in complex with buffer component.
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Histone deacetylase 6, POTASSIUM ION, ...
Authors:Sandmark, J, Ek, M.
Deposit date:2023-08-22
Release date:2024-09-11
Last modified:2025-03-26
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Selective and Bioavailable HDAC6 2-(Difluoromethyl)-1,3,4-oxadiazole Substrate Inhibitors and Modeling of Their Bioactivation Mechanism.
J.Med.Chem., 66, 2023

243083

건을2025-10-15부터공개중

PDB statisticsPDBj update infoContact PDBjnumon