4KZD
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![BU of 4kzd by Molmil](/molmil-images/mine/4kzd) | Crystal structure of an RNA aptamer in complex with fluorophore and Fab | Descriptor: | 4-(3,5-difluoro-4-hydroxybenzyl)-1,2-dimethyl-1H-imidazol-5-ol, BL3-6 Fab antibody, heavy chain, ... | Authors: | Huang, H, Suslov, N.B, Li, N, Koldobskaya, Y, Rice, P.A, Piccirilli, J.A. | Deposit date: | 2013-05-29 | Release date: | 2014-06-18 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (2.186 Å) | Cite: | A G-quadruplex-containing RNA activates fluorescence in a GFP-like fluorophore. Nat.Chem.Biol., 10, 2014
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6WV3
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![BU of 6wv3 by Molmil](/molmil-images/mine/6wv3) | Human VKOR with warfarin | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, S-WARFARIN, Vitamin K epoxide reductase, ... | Authors: | Liu, S, Sukumar, N, Li, W. | Deposit date: | 2020-05-05 | Release date: | 2020-11-11 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.197 Å) | Cite: | Structural basis of antagonizing the vitamin K catalytic cycle for anticoagulation. Science, 371, 2021
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8YOP
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![BU of 8yop by Molmil](/molmil-images/mine/8yop) | Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline | Descriptor: | 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... | Authors: | Li, X, Wang, M, Denk, T, Cheng, J. | Deposit date: | 2024-03-13 | Release date: | 2024-07-10 | Method: | ELECTRON MICROSCOPY (2.2 Å) | Cite: | Structural basis for differential inhibition of eukaryotic ribosomes by tigecycline. Nat Commun, 15, 2024
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7A8E
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![BU of 7a8e by Molmil](/molmil-images/mine/7a8e) | |
6ZQO
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![BU of 6zqo by Molmil](/molmil-images/mine/6zqo) | EYFP mutant - F165G | Descriptor: | G protein/GFP fusion protein, SULFATE ION | Authors: | Pletnev, V.Z, Pletnev, S.V, Pletneva, N.V. | Deposit date: | 2020-07-10 | Release date: | 2021-06-16 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Amino acid residue at the 165th position tunes EYFP chromophore maturation. A structure-based design. Comput Struct Biotechnol J, 19, 2021
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1MYW
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![BU of 1myw by Molmil](/molmil-images/mine/1myw) | CRYSTAL STRUCTURE OF A YELLOW FLUORESCENT PROTEIN WITH IMPROVED MATURATION AND REDUCED ENVIRONMENTAL SENSITIVITY | Descriptor: | Green fluorescent protein | Authors: | Rekas, A, Alattia, J.R, Nagai, T, Miyawaki, A, Ikura, M. | Deposit date: | 2002-10-04 | Release date: | 2003-01-14 | Last modified: | 2021-10-27 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Crystal Structure of Venus, a Yellow Fluorescent
Protein with Improved Maturation and
Reduced Environmental Sensitivity J.Biol.Chem., 277, 2002
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8G0I
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3VIC
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![BU of 3vic by Molmil](/molmil-images/mine/3vic) | Green-fluorescent variant of the non-fluorescent chromoprotein Rtms5 | Descriptor: | CHLORIDE ION, GFP-like non-fluorescent chromoprotein, IODIDE ION | Authors: | Battad, J.M, Traore, D.A.K, Byres, E, Wilce, M, Devenish, R.J, Rossjohn, J, Prescott, M. | Deposit date: | 2011-09-28 | Release date: | 2012-06-06 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | A Green Fluorescent Protein Containing a QFG Tri-Peptide Chromophore: Optical Properties and X-Ray Crystal Structure. Plos One, 7, 2012
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2UYE
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![BU of 2uye by Molmil](/molmil-images/mine/2uye) | Double mutant Y110S,F111V DntR from Burkholderia sp. strain DNT in complex with thiocyanate | Descriptor: | GLYCEROL, REGULATORY PROTEIN, THIOCYANATE ION | Authors: | Lonneborg, R, Smirova, I, Dian, C, leonard, G.A, McSweeney, S, Brzezinski, P. | Deposit date: | 2007-04-04 | Release date: | 2007-08-21 | Last modified: | 2023-12-13 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | In Vivo and in Vitro Investigation of Transcriptional Regulation by Dntr. J.Mol.Biol., 372, 2007
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3VK1
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![BU of 3vk1 by Molmil](/molmil-images/mine/3vk1) | Green-fluorescent variant of the non-fluorescent chromoprotein Rtms5 | Descriptor: | CHLORIDE ION, GFP-like non-fluorescent chromoprotein, IODIDE ION | Authors: | Battad, J.M, Traore, D.A.K, Wilce, M, Byres, M, Rossjohn, J, Devenish, R.J, Prescott, M. | Deposit date: | 2011-11-07 | Release date: | 2012-06-06 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | A Green Fluorescent Protein Containing a QFG Tri-Peptide Chromophore: Optical Properties and X-Ray Crystal Structure. Plos One, 7, 2012
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4PPL
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![BU of 4ppl by Molmil](/molmil-images/mine/4ppl) | Crystal structure of eCGP123 H193Q variant at pH 7.5 | Descriptor: | Monomeric Azami Green | Authors: | Don Paul, C, Traore, D.A.K, Devenish, R.J, Close, D, Bell, T, Bradbury, A, Wilce, M.C.J, Prescott, M. | Deposit date: | 2014-02-27 | Release date: | 2015-04-08 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | X-Ray Crystal Structure and Properties of Phanta, a Weakly Fluorescent Photochromic GFP-Like Protein. Plos One, 10, 2015
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7O7Y
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![BU of 7o7y by Molmil](/molmil-images/mine/7o7y) | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution) | Descriptor: | 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ... | Authors: | Bhatt, P.R, Scaiola, A, Leibundgut, M.A, Atkins, J.F, Ban, N. | Deposit date: | 2021-04-14 | Release date: | 2021-06-02 | Last modified: | 2024-04-24 | Method: | ELECTRON MICROSCOPY (2.2 Å) | Cite: | Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome. Science, 372, 2021
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6RUL
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![BU of 6rul by Molmil](/molmil-images/mine/6rul) | Crystal structure of GFP-LAMA-F98 - a GFP enhancer nanobody with cpDHFR insertion and TMP and NADPH | Descriptor: | GFP-LAMA-F98 a GFP enhancer nanobody with cpDHFR insertion,Dihydrofolate reductase,GFP-LAMA-F98 a GFP enhancer nanobody with cpDHFR insertion,Dihydrofolate reductase,Dihydrofolate reductase,GFP-LAMA-F98 a GFP enhancer nanobody with cpDHFR insertion,Dihydrofolate reductase,GFP-LAMA-F98 a GFP enhancer nanobody with cpDHFR insertion, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, TRIETHYLENE GLYCOL, ... | Authors: | Farrants, H, Tarnawski, M, Mueller, T.G, Otsuka, S, Hiblot, J, Koch, B, Kueblbeck, M, Kraeusslich, H.-G, Ellenberg, J, Johnsson, K. | Deposit date: | 2019-05-28 | Release date: | 2020-02-12 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Chemogenetic Control of Nanobodies. Nat.Methods, 17, 2020
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3TF4
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![BU of 3tf4 by Molmil](/molmil-images/mine/3tf4) | ENDO/EXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA | Descriptor: | CALCIUM ION, T. FUSCA ENDO/EXO-CELLULASE E4 CATALYTIC DOMAIN AND CELLULOSE-BINDING DOMAIN, beta-D-glucopyranose, ... | Authors: | Sakon, J, Wilson, D.B, Karplus, P.A. | Deposit date: | 1997-05-30 | Release date: | 1997-09-04 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structure and mechanism of endo/exocellulase E4 from Thermomonospora fusca. Nat.Struct.Biol., 4, 1997
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1SKM
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![BU of 1skm by Molmil](/molmil-images/mine/1skm) | HhaI methyltransferase in complex with DNA containing an abasic south carbocyclic sugar at its target site | Descriptor: | 5'-D(*T*GP*TP*CP*AP*GP*(HCX)P*GP*CP*AP*TP*GP*G)-3', 5'-D(*TP*CP*CP*AP*TP*GP*CP*GP*CP*TP*GP*AP*C)-3', Modification methylase HhaI, ... | Authors: | Horton, J.R, Ratner, G, Banavali, N, Huang, N, Marquez, V.E, MacKerell, A.D, Cheng, X. | Deposit date: | 2004-03-05 | Release date: | 2004-08-24 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Caught in the act: visualization of an intermediate in the DNA base-flipping pathway induced by HhaI methyltransferase Nucleic Acids Res., 32, 2004
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8B2L
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![BU of 8b2l by Molmil](/molmil-images/mine/8b2l) | Cryo-EM structure of the plant 80S ribosome | Descriptor: | 18S rRNA, 25S rRNA, 30S ribosomal protein S15, ... | Authors: | Smirnova, J, Loerke, J, Kleinau, G, Schmidt, A, Buerger, J, Meyer, E.H, Mielke, T, Scheerer, P, Bock, R, Spahn, C.M.T, Zoschke, R. | Deposit date: | 2022-09-14 | Release date: | 2023-08-23 | Last modified: | 2024-04-24 | Method: | ELECTRON MICROSCOPY (2.2 Å) | Cite: | Structure of the actively translating plant 80S ribosome at 2.2 angstrom resolution. Nat.Plants, 9, 2023
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2ZJ4
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![BU of 2zj4 by Molmil](/molmil-images/mine/2zj4) | Isomerase domain of human glucose:fructose-6-phosphate amidotransferase | Descriptor: | 2-DEOXY-2-AMINO GLUCITOL-6-PHOSPHATE, Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1 | Authors: | Nakaishi, Y, Bando, M, Kondo, K, Tsuge, H. | Deposit date: | 2008-02-29 | Release date: | 2009-01-13 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structural analysis of human glutamine:fructose-6-phosphate amidotransferase, a key regulator in type 2 diabetes Febs Lett., 583, 2009
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8K2P
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![BU of 8k2p by Molmil](/molmil-images/mine/8k2p) | Crystal structure of CtGST-F76A | Descriptor: | Glutathione S-transferase | Authors: | Yang, J, Xiao, J.Y, Lei, X.G. | Deposit date: | 2023-07-13 | Release date: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Enzymatic Degradation of Deoxynivalenol with the Engineered Detoxification Enzyme Fhb7. Jacs Au, 4, 2024
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3ZUF
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![BU of 3zuf by Molmil](/molmil-images/mine/3zuf) | |
2P28
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![BU of 2p28 by Molmil](/molmil-images/mine/2p28) | Structure of the PHE2 and PHE3 fragments of the integrin beta2 subunit | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Integrin beta-2 | Authors: | Shi, M, Foo, S.Y, Tan, S.M, Mitchell, E.P, Law, S.K.A, Lescar, J. | Deposit date: | 2007-03-07 | Release date: | 2007-08-14 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | A structural hypothesis for the transition between bent and extended conformations of the leukocyte beta2 integrins J.Biol.Chem., 282, 2007
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2OJK
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![BU of 2ojk by Molmil](/molmil-images/mine/2ojk) | Crystal Structure of Green Fluorescent Protein from Zoanthus sp at 2.2 A Resolution | Descriptor: | GFP-like fluorescent chromoprotein FP506 | Authors: | Pletneva, N.V, Pletnev, S.V, Tikhonova, T.V, Pletnev, V.Z. | Deposit date: | 2007-01-12 | Release date: | 2007-09-25 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Refined crystal structures of red and green fluorescent proteins from the button polyp Zoanthus. Acta Crystallogr.,Sect.D, 63, 2007
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5V6C
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![BU of 5v6c by Molmil](/molmil-images/mine/5v6c) | Crystal Structure of the Second beta-Prism Domain of RbmC from V. cholerae | Descriptor: | GLYCEROL, Hemolysin-related protein | Authors: | De, S, Kaus, K, Sinclair, S, Case, B.C, Olson, R. | Deposit date: | 2017-03-16 | Release date: | 2018-01-24 | Last modified: | 2023-10-04 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structural basis of mammalian glycan targeting by Vibrio cholerae cytolysin and biofilm proteins. PLoS Pathog., 14, 2018
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4AKE
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![BU of 4ake by Molmil](/molmil-images/mine/4ake) | ADENYLATE KINASE | Descriptor: | ADENYLATE KINASE | Authors: | Schlauderer, G.J, Schulz, G.E. | Deposit date: | 1995-12-29 | Release date: | 1996-06-10 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Adenylate kinase motions during catalysis: an energetic counterweight balancing substrate binding. Structure, 4, 1996
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2UYF
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![BU of 2uyf by Molmil](/molmil-images/mine/2uyf) | Single mutant F111L DntR from Burkholderia sp. strain DNT in complex with thiocyanate | Descriptor: | ACETATE ION, GLYCEROL, REGULATORY PROTEIN, ... | Authors: | Lonneborg, R, Smirova, I, Dian, C, Leonard, G.A, Mcsweeney, S, Brzezinski, P. | Deposit date: | 2007-04-04 | Release date: | 2007-08-21 | Last modified: | 2023-12-13 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | In Vivo and in Vitro Investigation of Transcriptional Regulation by Dntr. J.Mol.Biol., 372, 2007
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7RRJ
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![BU of 7rrj by Molmil](/molmil-images/mine/7rrj) | Crystal structure of fast switching M159Q mutant of fluorescent protein Dronpa (Dronpa2) | Descriptor: | Fluorescent protein Dronpa | Authors: | Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G. | Deposit date: | 2021-08-09 | Release date: | 2021-10-13 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Energetic Basis and Design of Enzyme Function Demonstrated Using GFP, an Excited-State Enzyme. J.Am.Chem.Soc., 144, 2022
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