1MYW
CRYSTAL STRUCTURE OF A YELLOW FLUORESCENT PROTEIN WITH IMPROVED MATURATION AND REDUCED ENVIRONMENTAL SENSITIVITY
Summary for 1MYW
| Entry DOI | 10.2210/pdb1myw/pdb |
| Descriptor | Green fluorescent protein (2 entities in total) |
| Functional Keywords | bioluminescence, photoactive protein, green fluorescent protein, yellow-emission variant, improved maturation, beta-barrel, chromophore, luminescent protein |
| Biological source | Aequorea victoria |
| Total number of polymer chains | 1 |
| Total formula weight | 26875.29 |
| Authors | Rekas, A.,Alattia, J.R.,Nagai, T.,Miyawaki, A.,Ikura, M. (deposition date: 2002-10-04, release date: 2003-01-14, Last modification date: 2024-10-16) |
| Primary citation | Rekas, A.,Alattia, J.R.,Nagai, T.,Miyawaki, A.,Ikura, M. Crystal Structure of Venus, a Yellow Fluorescent Protein with Improved Maturation and Reduced Environmental Sensitivity J.Biol.Chem., 277:50573-50578, 2002 Cited by PubMed Abstract: Yellow emission variants of green fluorescent protein (GFP) have been found useful in a variety of applications in biological systems due to their red-shifted emission spectrum and sensitivity to environmental parameters, such as pH and ionic strength. However, slow maturation properties and new requirements for more intense fluorescence necessitated further mutagenesis studies of these proteins. Venus, a new variant with improved maturation and brightness, as well as reduced environmental dependence, was recently developed by introducing five mutations into the well characterized variant, enhanced yellow fluorescent protein (EYFP). In this paper, we present the crystal structure of Venus at 2.2 A resolution, which enabled us to correlate its novel features with these mutation points. The rearrangement of several side chains near the chromophore, initiated by the F46L mutation, was found to improve maturation at 37 degrees C by removing steric and energetic constraints, which may hinder folding of the polypeptide chain, and by accelerating the oxidation of the Calpha-Cbeta bond of Tyr(66) during chromophore formation. M153T, V163A, and S175G were also found to improve the rate of maturation by creating regions of greater flexibility. F64L induced large conformational changes in the molecule, leading to the removal of halide sensitivity by preventing ion access to the binding site. PubMed: 12370172DOI: 10.1074/jbc.M209524200 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (2.2 Å) |
Structure validation
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