PDB: 47011 resultsInfo pagesStatus searchChemie searchBIRD

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4NCK	Crystal Structure of Pyrococcus furiosis Rad50 R797G mutation Descriptor: CHLORIDE ION, DNA double-strand break repair Rad50 ATPase, MAGNESIUM ION, ... Authors: Classen, S, Williams, G.J, Arvai, A.S, Williams, R.S. Deposit date: 2013-10-24 Release date: 2014-03-05 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.99 Å) Cite: ATP-driven Rad50 conformations regulate DNA tethering, end resection, and ATM checkpoint signaling. Embo J., 33, 2014
1I34	SOLUTION DNA QUADRUPLEX WITH DOUBLE CHAIN REVERSAL LOOP AND TWO DIAGONAL LOOPS CONNECTING GGGG TETRADS FLANKED BY G-(T-T) TRIAD AND T-T-T TRIPLE Descriptor: 5'-D(*GP*GP*TP*TP*TP*TP*GP*GP*CP*AP*GP*GP*GP*TP*TP*TP*TP*GP*GP*T)-3' Authors: Kuryavyi, V, Majumdar, A, Shallop, A, Chernichenko, N, Skripkin, E, Jones, R, Patel, D.J. Deposit date: 2001-02-12 Release date: 2001-06-27 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: A double chain reversal loop and two diagonal loops define the architecture of a unimolecular DNA quadruplex containing a pair of stacked G(syn)-G(syn)-G(anti)-G(anti) tetrads flanked by a G-(T-T) Triad and a T-T-T triple. J.Mol.Biol., 310, 2001
1HMY	CRYSTAL STRUCTURE OF THE HHAI DNA METHYLTRANSFERASE COMPLEXED WITH S-ADENOSYL-L-METHIONINE Descriptor: HaeIII METHYLTRANSFERASE, S-ADENOSYLMETHIONINE Authors: Cheng, X. Deposit date: 1993-08-05 Release date: 1993-10-31 Last modified: 2024-06-05 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structure of the HhaI DNA methyltransferase complexed with S-adenosyl-L-methionine. Cell(Cambridge,Mass.), 74, 1993
4NCJ	Crystal Structure of Pyrococcus furiosis Rad50 R805E mutation with ADP Beryllium Flouride Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA double-strand break repair Rad50 ATPase, ... Authors: Classen, S, Williams, G.J, Arvai, A.S, Williams, R.S. Deposit date: 2013-10-24 Release date: 2014-03-05 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2 Å) Cite: ATP-driven Rad50 conformations regulate DNA tethering, end resection, and ATM checkpoint signaling. Embo J., 33, 2014
1IHH	2.4 ANGSTROM CRYSTAL STRUCTURE OF AN OXALIPLATIN 1,2-D(GPG) INTRASTRAND CROSS-LINK IN A DNA DODECAMER DUPLEX Descriptor: 1R,2R-DIAMINOCYCLOHEXANE, 5'-D(*CP*CP*TP*CP*TP*GP*GP*TP*CP*TP*CP*C)-3', 5'-D(*GP*GP*AP*GP*AP*CP*CP*AP*GP*AP*GP*G)-3', ... Authors: Spingler, B, Whittington, D.A, Lippard, S.J. Deposit date: 2001-04-19 Release date: 2001-10-26 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.4 Å) Cite: 2.4 A crystal structure of an oxaliplatin 1,2-d(GpG) intrastrand cross-link in a DNA dodecamer duplex. Inorg.Chem., 40, 2001
5CTY	Crystal structure of the ATP binding domain of S. aureus GyrB complexed with a fragment Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 3-[2-(pyridin-3-yl)-1,3-thiazol-5-yl]-2,7-dihydro-6H-pyrazolo[3,4-b]pyridin-6-one, CHLORIDE ION, ... Authors: Andersen, O.A, Barker, J, Cheng, R.K, Kahmann, J, Felicetti, B, Wood, M, Scheich, C, Mesleh, M, Cross, J.B, Zhang, J, Yang, Q, Lippa, B, Ryan, M.D. Deposit date: 2015-07-24 Release date: 2016-02-03 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Fragment-based discovery of DNA gyrase inhibitors targeting the ATPase subunit of GyrB. Bioorg.Med.Chem.Lett., 26, 2016
1NP9	Structure of the parallel-stranded DNA quadruplex d(TTAGGGA)4 containing the human telomeric repeat Descriptor: 5'-D(*TP*TP*AP*GP*GP*GP*T)-3' Authors: Gavathiotis, E, Searle, M.S. Deposit date: 2003-01-17 Release date: 2003-09-16 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure of the parallel-stranded DNA quadruplex d(TTAGGGT)4 containing the human telomeric repeat: evidence for A-tetrad formation from NMR and molecular dynamics simulations. ORG.BIOMOL.CHEM., 1, 2003
6ENH	Crystal structure of the 43K ATPase domain of Thermus thermophilus gyrase B in complex with an aminocoumarin Descriptor: Coumermycin A1, DNA gyrase subunit B, IMIDAZOLE Authors: Vanden Broeck, A, McEwen, A.G, Lamour, V. Deposit date: 2017-10-04 Release date: 2019-04-10 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.94 Å) Cite: Structural Basis for DNA Gyrase Interaction with Coumermycin A1. J.Med.Chem., 62, 2019
1JRV	SOLUTION STRUCTURE OF DAATAA DNA BULGE Descriptor: 5'-D(*CP*GP*TP*AP*GP*CP*CP*GP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*TP*CP*GP*AP*AP*TP*AP*AP*GP*CP*TP*AP*CP*G)-3' Authors: Gollmick, F.A, Lorenz, M, Dornberger, U, von Langen, J, Diekmann, S, Fritzsche, H. Deposit date: 2001-08-15 Release date: 2002-06-19 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of dAATAA and dAAUAA DNA bulges. Nucleic Acids Res., 30, 2002
1JRW	Solution Structure of dAATAA DNA Bulge Descriptor: 5'-D(*CP*GP*TP*AP*GP*CP*CP*GP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*TP*CP*GP*AP*AP*TP*AP*AP*GP*CP*TP*AP*CP*G)-3' Authors: Gollmick, F.A, Lorenz, M, Dornberger, U, von Langen, J, Diekmann, S, Fritzsche, H. Deposit date: 2001-08-15 Release date: 2002-08-28 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of dAATAA and dAAUAA DNA bulges. Nucleic Acids Res., 30, 2002
4E60	Interactions of Ba2+ with a non-self-complementary Z-type DNA duplex Descriptor: BARIUM ION, DNA (5'-D(*CP*AP*CP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*GP*TP*G)-3'), ... Authors: Mandal, P.K, Venkadesh, S, Gautham, N. Deposit date: 2012-03-15 Release date: 2013-03-20 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.86 Å) Cite: Interactions of Ba2+ with a non-self-complementary Z-type DNA duplex To be Published
2KG4	Three-dimensional structure of human Gadd45alpha in solution by NMR Descriptor: Growth arrest and DNA-damage-inducible protein GADD45 alpha Authors: Sanchez, R, Pantoja-Uceda, D, Prieto, J, Diercks, T, Campos-Olivas, R, Blanco, F.J. Deposit date: 2009-03-04 Release date: 2009-03-31 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Solution structure of human growth arrest and DNA damage 45alpha (Gadd45alpha) and its interactions with proliferating cell nuclear antigen (PCNA) and Aurora A kinase J.Biol.Chem., 285, 2010
2KMG	The structure of the KlcA and ArdB proteins show a novel fold and antirestriction activity against Type I DNA restriction systems in vivo but not in vitro Descriptor: KlcA Authors: Serfiotis-Mitsa, D, Herbert, A.P, Roberts, G.A, Soares, D.C, White, J.H, Blakely, G.W, Uhrin, D, Dryden, D.T.F. Deposit date: 2009-07-28 Release date: 2009-12-29 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: The structure of the KlcA and ArdB proteins reveals a novel fold and antirestriction activity against Type I DNA restriction systems in vivo but not in vitro Nucleic Acids Res., 38, 2010
7M9C	ADP-AlF3 bound TnsC structure in open form Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA (34-MER), TnsC Authors: Park, J, Tsai, A.W.L, Mehrotra, E, Kellogg, E.H. Deposit date: 2021-03-30 Release date: 2021-07-28 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Structural basis for target site selection in RNA-guided DNA transposition systems. Science, 373, 2021
6CQ3	Crystal structure of DNA dodecamer D(CGCGAATTCGCG) Descriptor: COBALT (II) ION, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION Authors: Delgado, J.L, Vance, N.R, Kerns, R.J. Deposit date: 2018-03-14 Release date: 2018-05-02 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Crystal structure of DNA dodecamer D(CGCGAATTCGCG) To Be Published
6HM4	Crystal structure of Rad4 BRCT1,2 in complex with a Mdb1 phosphopeptide Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DNA damage response protein Mdb1, ... Authors: Day, M, Rappas, M, Oliver, A.W, Pearl, L.H. Deposit date: 2018-09-12 Release date: 2018-10-17 Method: X-RAY DIFFRACTION (1.770186 Å) Cite: BRCT domains of the DNA damage checkpoint proteins TOPBP1/Rad4 display distinct specificities for phosphopeptide ligands. Elife, 7, 2018
6HM5	Crystal structure of TOPBP1 BRCT0,1,2 in complex with a RAD9 phosphopeptide Descriptor: Cell cycle checkpoint control protein RAD9A, DNA topoisomerase II binding protein 1 Authors: Day, M, Rappas, M, Oliver, A.W, Pearl, L.H. Deposit date: 2018-09-12 Release date: 2018-10-17 Method: X-RAY DIFFRACTION (2.330038 Å) Cite: BRCT domains of the DNA damage checkpoint proteins TOPBP1/Rad4 display distinct specificities for phosphopeptide ligands. Elife, 7, 2018
1BB8	N-TERMINAL DNA BINDING DOMAIN FROM TN916 INTEGRASE, NMR, 25 STRUCTURES Descriptor: INTEGRASE Authors: Clubb, R.T, Connolly, K.M, Wojciak, J.M. Deposit date: 1998-04-29 Release date: 1998-11-25 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Site-specific DNA binding using a variation of the double stranded RNA binding motif. Nat.Struct.Biol., 5, 1998
2HMY	BINARY COMPLEX OF HHAI METHYLTRANSFERASE WITH ADOMET FORMED IN THE PRESENCE OF A SHORT NONPSECIFIC DNA OLIGONUCLEOTIDE Descriptor: PROTEIN (CYTOSINE-SPECIFIC METHYLTRANSFERASE HHAI), S-ADENOSYLMETHIONINE Authors: O'Gara, M, Zhang, X, Roberts, R.J, Cheng, X. Deposit date: 1999-02-08 Release date: 1999-03-19 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.61 Å) Cite: Structure of a binary complex of HhaI methyltransferase with S-adenosyl-L-methionine formed in the presence of a short non-specific DNA oligonucleotide. J.Mol.Biol., 287, 1999
149D	SOLUTION STRUCTURE OF A PYRIMIDINE(DOT)PURINE(DOT) PYRIMIDINE DNA TRIPLEX CONTAINING T(DOT)AT, C+(DOT)GC AND G(DOT)TA TRIPLES Descriptor: 5'-D(*CP*CP*TP*AP*TP*TP*C)-3', 5'-D(*CP*TP*TP*GP*TP*CP*C)-3', 5'-D(*GP*AP*AP*TP*AP*GP*G)-3' Authors: Radhakrishnan, I, Patel, D.J. Deposit date: 1993-11-15 Release date: 1994-04-30 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of a pyrimidine.purine.pyrimidine DNA triplex containing T.AT, C+.GC and G.TA triples. Structure, 2, 1994
1RN9	A SHORT LEXITROPSIN THAT RECOGNIZES THE DNA MINOR GROOVE AT 5'-ACTAGT-3': UNDERSTANDING THE ROLE OF ISOPROPYL-THIAZOLE Descriptor: 5'-D(*CP*GP*AP*CP*TP*AP*GP*TP*CP*G)-3' Authors: Anthony, N.G, Johnston, B.F, Khalaf, A.I, Mackay, S.P, Parkinson, J.A, Suckling, C.J, Waigh, R.D. Deposit date: 2003-12-01 Release date: 2004-08-24 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Short Lexitropsin that Recognizes the DNA Minor Groove at 5'-ACTAGT-3': Understanding the Role of Isopropyl-thiazole. J.Am.Chem.Soc., 126, 2004
1C6V	SIV INTEGRASE (CATALYTIC DOMAIN + DNA BIDING DOMAIN COMPRISING RESIDUES 50-293) MUTANT WITH PHE 185 REPLACED BY HIS (F185H) Descriptor: PROTEIN (SIU89134), PROTEIN (SIV INTEGRASE) Authors: Chen, Z, Yan, Y, Munshi, S, Li, Y, Zruygay-Murphy, J, Xu, B, Witmer, M, Felock, P, Wolfe, A, Sardana, V, Emini, E.A, Hazuda, D, Kuo, L.C. Deposit date: 1999-12-21 Release date: 2000-12-27 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (3 Å) Cite: X-ray structure of simian immunodeficiency virus integrase containing the core and C-terminal domain (residues 50-293)--an initial glance of the viral DNA binding platform. J.Mol.Biol., 296, 2000
1OZ8	Intramolecular higher-order packing of parallel quadruplexes comprising a G:G:G:G tetrad and a G(:A):G(:A):G(:A):G heptad of GGA triplet repeat DNA Descriptor: 5'-D(*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*A)-3' Authors: Matsugami, A, Okuizumi, T, Uesugi, S, Katahira, M. Deposit date: 2003-04-08 Release date: 2004-04-08 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Intramolecular Higher Order Packing of Parallel Quadruplexes Comprising a G:G:G:G Tetrad and a G(:A):G(:A):G(:A):G Heptad of GGA Triplet Repeat DNA J.BIOL.CHEM., 278, 2003
1JU0	NMR solution structure of a DNA kissing complex Descriptor: 5'-D(*CP*TP*TP*GP*CP*TP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3' Authors: Barbault, F, Huynh-Dinh, T, Paoletti, J, Lancelot, G. Deposit date: 2001-08-23 Release date: 2002-08-23 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: A new peculiar DNA structure: NMR solution structure of a DNA kissing complex. J.Biomol.Struct.Dyn., 19, 2002
1K2L	STRUCTURAL CHARACTERIZATION OF BISINTERCALATION IN HIGHER-ORDER DNA AT A JUNCTION-LIKE QUADRUPLEX Descriptor: 5'-D(*CP*GP*TP*AP*CP*G)-3', BIS-(9-OCTYLAMINO(2-DIMETHYLAMINOETHYL)ACRIDINE-4-CARBOXAMIDE, COBALT (II) ION Authors: Teixeira, S.C.M, Thorpe, J.H, Todd, A.K, Powell, H.R, Adams, A, Wakelin, L.P.G, Denny, W.A, Cardin, C.J. Deposit date: 2001-09-28 Release date: 2002-10-16 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural Characterisation of Bisintercalation in Higher-order DNA at a Junction-like Quadruplex J.MOL.BIOL., 323, 2002

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