Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6PDZ
DownloadVisualize
BU of 6pdz by Molmil
Crystal structure of PPARgamma ligand binding domain in complex with SMRT peptide and inverse agonist T0070907
Descriptor: 2-chloro-5-nitro-N-(pyridin-4-yl)benzamide, Nuclear receptor corepressor 2, Peroxisome proliferator-activated receptor gamma
Authors:Shang, J, Kojetin, D.J.
Deposit date:2019-06-19
Release date:2020-03-04
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A molecular switch regulating transcriptional repression and activation of PPAR gamma.
Nat Commun, 11, 2020
1ZNM
DownloadVisualize
BU of 1znm by Molmil
A zinc finger with an artificial beta-turn, original sequence taken from the third zinc finger domain of the human transcriptional repressor protein YY1 (YING and YANG 1, a delta transcription factor), nmr, 34 structures
Descriptor: YY1, ZINC ION
Authors:Viles, J.H, Patel, S.U, Mitchell, J.B.O, Moody, C.M, Justice, D.E, Uppenbrink, J, Doyle, P.M, Harris, C.J, Sadler, P.J, Thornton, J.M.
Deposit date:1997-11-20
Release date:1998-04-01
Last modified:2024-10-23
Method:SOLUTION NMR
Cite:Design, synthesis and structure of a zinc finger with an artificial beta-turn.
J.Mol.Biol., 279, 1998
8DKN
DownloadVisualize
BU of 8dkn by Molmil
PPARg bound to T0070907 and Co-R peptide
Descriptor: 2-chloro-5-nitro-N-(pyridin-4-yl)benzamide, 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, Nuclear receptor corepressor 1 peptide, ...
Authors:Larsen, N.A, Tsai, J.
Deposit date:2022-07-05
Release date:2022-09-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Biochemical and structural basis for the pharmacological inhibition of nuclear hormone receptor PPAR gamma by inverse agonists.
J.Biol.Chem., 298, 2022
8DKV
DownloadVisualize
BU of 8dkv by Molmil
PPARg bound to JTP-426467 and Co-R peptide
Descriptor: 2-chloro-N-[4-(5-methyl-1,3-benzoxazol-2-yl)phenyl]-5-nitrobenzamide, 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, Nuclear receptor corepressor 1, ...
Authors:Larsen, N.A.
Deposit date:2022-07-06
Release date:2022-09-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Biochemical and structural basis for the pharmacological inhibition of nuclear hormone receptor PPAR gamma by inverse agonists.
J.Biol.Chem., 298, 2022
1JHC
DownloadVisualize
BU of 1jhc by Molmil
LEXA S119A C-TERMINAL TRYPTIC FRAGMENT
Descriptor: LEXA REPRESSOR
Authors:Luo, Y, Pfuetzner, R.A, Mosimann, S, Little, J.W, Strynadka, N.C.J.
Deposit date:2001-06-27
Release date:2001-09-19
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of LexA: a conformational switch for regulation of self-cleavage.
Cell(Cambridge,Mass.), 106, 2001
1JHE
DownloadVisualize
BU of 1jhe by Molmil
LEXA L89P Q92W E152A K156A MUTANT
Descriptor: LEXA REPRESSOR
Authors:Luo, Y, Pfuetzner, R.A, Mosimann, S, Little, J.W, J Strynadka, N.C.
Deposit date:2001-06-27
Release date:2001-09-19
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of LexA: a conformational switch for regulation of self-cleavage.
Cell(Cambridge,Mass.), 106, 2001
1GDR
DownloadVisualize
BU of 1gdr by Molmil
MODEL FOR A DNA MEDIATED SYNAPTIC COMPLEX SUGGESTED BY CRYSTAL PACKING OF GAMMA DELTA RESOLVASE SUBUNITS
Descriptor: GAMMA DELTA-RESOLVASE
Authors:Rice, P.A, Steitz, T.A.
Deposit date:1993-08-31
Release date:1994-04-30
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Model for a DNA-mediated synaptic complex suggested by crystal packing of gamma delta resolvase subunits.
EMBO J., 13, 1994
3V8K
DownloadVisualize
BU of 3v8k by Molmil
Crystal structure of Staphylococcus aureus biotin protein ligase in complex with biotin
Descriptor: BIOTIN, Biotin ligase
Authors:Yap, M.Y, Pendini, N.R.
Deposit date:2011-12-23
Release date:2012-12-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.23 Å)
Cite:Selective inhibition of biotin protein ligase from Staphylococcus aureus.
J.Biol.Chem., 287, 2012
3V8L
DownloadVisualize
BU of 3v8l by Molmil
Crystal structure of Staphylococcus aureus biotin protein ligase in complex with biotinyl-5'-AMP
Descriptor: BIOTINYL-5-AMP, Biotin ligase
Authors:Yap, M.Y.
Deposit date:2011-12-23
Release date:2012-12-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Selective inhibition of biotin protein ligase from Staphylococcus aureus.
J.Biol.Chem., 287, 2012
1MNM
DownloadVisualize
BU of 1mnm by Molmil
YEAST MATALPHA2/MCM1/DNA TERNARY TRANSCRIPTION COMPLEX CRYSTAL STRUCTURE
Descriptor: DNA (STE6 OPERATOR DNA), PROTEIN (MAT ALPHA-2 TRANSCRIPTIONAL REPRESSOR), PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Authors:Tan, S, Richmond, T.J.
Deposit date:1997-11-03
Release date:1998-03-18
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of the yeast MATalpha2/MCM1/DNA ternary complex.
Nature, 391, 1998
7SXI
DownloadVisualize
BU of 7sxi by Molmil
Solution Structure of Sds3 Capped Tudor Domain
Descriptor: Sin3 histone deacetylase corepressor complex component SDS3
Authors:Marcum, R.D, Radhakrishnan, I.
Deposit date:2021-11-23
Release date:2022-01-19
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:A capped Tudor domain within a core subunit of the Sin3L/Rpd3L histone deacetylase complex binds to nucleic acid G-quadruplexes.
J.Biol.Chem., 298, 2022
8AQN
DownloadVisualize
BU of 8aqn by Molmil
Crystal structure of PPARG and NCOR2 with BAY-4931, an inverse agonist (compound 6c)
Descriptor: 2-chloranyl-~{N}-[2-(4-ethylphenyl)-1,3-benzoxazol-5-yl]-5-nitro-benzamide, CALCIUM ION, GLYCEROL, ...
Authors:Friberg, A, Orsi, D.L, Pook, E, Braeuer, N, Lemke, C.T, Stellfeld, T, Puetter, V, Goldstein, J.
Deposit date:2022-08-12
Release date:2022-11-09
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Discovery and Structure-Based Design of Potent Covalent PPAR gamma Inverse-Agonists BAY-4931 and BAY-0069 .
J.Med.Chem., 65, 2022
8AQM
DownloadVisualize
BU of 8aqm by Molmil
Crystal structure of PPARG and NCOR2 with an inverse agonist (compound 6a)
Descriptor: 2-chloranyl-~{N}-[2-(3-methylphenyl)-1,3-benzoxazol-5-yl]-5-nitro-benzamide, Nuclear receptor corepressor 2, Peroxisome proliferator-activated receptor gamma
Authors:Friberg, A, Orsi, D.L, Pook, E, Braeuer, N, Lemke, C.T, Stellfeld, T, Puetter, V, Goldstein, J.
Deposit date:2022-08-12
Release date:2022-11-09
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Discovery and Structure-Based Design of Potent Covalent PPAR gamma Inverse-Agonists BAY-4931 and BAY-0069 .
J.Med.Chem., 65, 2022
3V8J
DownloadVisualize
BU of 3v8j by Molmil
Crystal structure of Staphylococcus aureus biotin protein ligase
Descriptor: Biotin ligase
Authors:Pendini, N.R, Yap, M.Y.
Deposit date:2011-12-23
Release date:2012-12-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Selective inhibition of biotin protein ligase from Staphylococcus aureus.
J.Biol.Chem., 287, 2012
3H52
DownloadVisualize
BU of 3h52 by Molmil
Crystal structure of the antagonist form of human glucocorticoid receptor
Descriptor: 11-(4-DIMETHYLAMINO-PHENYL)-17-HYDROXY-13-METHYL-17-PROP-1-YNYL-1,2,6,7,8,11,12,13,14,15,16,17-DODEC AHYDRO-CYCLOPENTA[A]PHENANTHREN-3-ONE, GLYCEROL, Glucocorticoid receptor, ...
Authors:Schoch, G.A, Benz, J, D'Arcy, B, Stihle, M, Burger, D, Thoma, R, Ruf, A.
Deposit date:2009-04-21
Release date:2009-12-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Molecular switch in the glucocorticoid receptor: active and passive antagonist conformations
J.Mol.Biol., 395, 2010
2GPV
DownloadVisualize
BU of 2gpv by Molmil
Estrogen Related Receptor-gamma ligand binding domain complexed with 4-hydroxy-tamoxifen and a SMRT peptide
Descriptor: 4-HYDROXYTAMOXIFEN, Estrogen-related receptor gamma, Nuclear receptor corepressor 2
Authors:Wang, L, Zuercher, W.J, Consler, T.G, Lambert, M.H, Miller, A.B, Osband-miller, L.A, McKee, D.D, Willson, T.M, Nolte, R.T.
Deposit date:2006-04-18
Release date:2006-09-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:X-ray crystal structures of the estrogen-related receptor-gamma ligand binding domain in three functional states reveal the molecular basis of small molecule regulation.
J.Biol.Chem., 281, 2006
6UXY
DownloadVisualize
BU of 6uxy by Molmil
PRMT5:MEP50 Complexed with Allosteric Inhibitor Compound 8
Descriptor: (5R)-2-amino-5-(2-cyclohexylethyl)-3-methyl-5-phenyl-3,5-dihydro-4H-imidazol-4-one, 1,2-ETHANEDIOL, GLYCEROL, ...
Authors:Palte, R.L, Schneider, S.E.
Deposit date:2019-11-08
Release date:2020-08-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Allosteric Modulation of Protein Arginine Methyltransferase 5 (PRMT5).
Acs Med.Chem.Lett., 11, 2020
6UXX
DownloadVisualize
BU of 6uxx by Molmil
PRMT5:MEP50 Complexed with Allosteric Inhibitor Compound 1a
Descriptor: (5R)-2-amino-5-(4-methoxyphenyl)-3-methyl-5-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]decan-1-yl]-3,5-dihydro-4H-imidazol-4-one, Methylosome protein 50, Protein arginine N-methyltransferase 5
Authors:Palte, R.L, Schneider, S.E.
Deposit date:2019-11-08
Release date:2020-08-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Allosteric Modulation of Protein Arginine Methyltransferase 5 (PRMT5).
Acs Med.Chem.Lett., 11, 2020
6XYX
DownloadVisualize
BU of 6xyx by Molmil
Crystal structure of the BCL6 BTB domain in complex with the NCoR1 BBD corepressor peptide
Descriptor: 1,2-ETHANEDIOL, B-cell lymphoma 6 protein, Nuclear receptor corepressor 1, ...
Authors:Zacharchenko, T, Wright, S.C.
Deposit date:2020-01-31
Release date:2020-12-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Functionalization of the BCL6 BTB domain into a noncovalent crystallization chaperone.
Iucrj, 8, 2021
6XXS
DownloadVisualize
BU of 6xxs by Molmil
Crystal structure of an NCoR1BBD2-BCL6BTB chimera in complex with the NcoR1 BBD1 corepressor peptide.
Descriptor: B-cell lymphoma 6 protein, Nuclear receptor corepressor 1
Authors:Zacharchenko, T, Wright, S.C.
Deposit date:2020-01-28
Release date:2020-12-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Functionalization of the BCL6 BTB domain into a noncovalent crystallization chaperone.
Iucrj, 8, 2021
1AHD
DownloadVisualize
BU of 1ahd by Molmil
DETERMINATION OF THE NMR SOLUTION STRUCTURE OF AN ANTENNAPEDIA HOMEODOMAIN-DNA COMPLEX
Descriptor: DNA (5'-D(*CP*TP*CP*TP*AP*AP*TP*GP*GP*CP*TP*TP*TP*C)-3'), DNA (5'-D(*GP*AP*AP*AP*GP*CP*CP*AP*TP*TP*AP*GP*AP*G)-3'), Homeotic protein antennapedia
Authors:Billeter, M, Qian, Y.Q, Otting, G, Muller, M, Gehring, W.J, Wuthrich, K.
Deposit date:1993-04-02
Release date:1993-10-31
Last modified:2024-04-10
Method:SOLUTION NMR
Cite:Determination of the nuclear magnetic resonance solution structure of an Antennapedia homeodomain-DNA complex.
J.Mol.Biol., 234, 1993
1FTZ
DownloadVisualize
BU of 1ftz by Molmil
NUCLEAR MAGNETIC RESONANCE SOLUTION STRUCTURE OF THE FUSHI TARAZU HOMEODOMAIN FROM DROSOPHILA AND COMPARISON WITH THE ANTENNAPEDIA HOMEODOMAIN
Descriptor: FUSHI TARAZU PROTEIN
Authors:Qian, Y.Q, Furukubo-Tokunaga, K, Resendez-Perez, D, Muller, M, Gehring, W.J, Wuthrich, K.
Deposit date:1994-01-07
Release date:1994-05-31
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Nuclear magnetic resonance solution structure of the fushi tarazu homeodomain from Drosophila and comparison with the Antennapedia homeodomain.
J.Mol.Biol., 238, 1994
1MM3
DownloadVisualize
BU of 1mm3 by Molmil
Solution structure of the 2nd PHD domain from Mi2b with C-terminal loop replaced by corresponding loop from WSTF
Descriptor: Mi2-beta(Chromodomain helicase-DNA-binding protein 4) and transcription factor WSTF, ZINC ION
Authors:Kwan, A.H.Y, Gell, D.A, Verger, A, Crossley, M, Matthews, J.M, Mackay, J.P.
Deposit date:2002-09-02
Release date:2003-07-22
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Engineering a Protein Scaffold from a PHD Finger
structure, 11, 2003
4BAY
DownloadVisualize
BU of 4bay by Molmil
Phosphomimetic mutant of LSD1-8a splicing variant in complex with CoREST
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A, REST COREPRESSOR 1
Authors:Toffolo, E, Paganini, L, Rusconi, F, Tortorici, M, Pilotto, S, Verpelli, C, Tedeschi, G, Maffioli, E, Sala, C, Mattevi, A, Battaglioli, E.
Deposit date:2012-09-17
Release date:2013-11-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Phosphorylation of Neuronal Lysine-Specific Demethylase 1Lsd1/Kdm1A Impairs Transcriptional Repression by Regulating Interaction with Corest and Histone Deacetylases Hdac1/2.
J.Neurochem., 128, 2014
5U50
DownloadVisualize
BU of 5u50 by Molmil
Crystal structure of citrus MAF1 in space group C 2 2 21
Descriptor: Repressor of RNA polymerase III transcription
Authors:Soprano, A.S, Giuseppe, P.O, Nascimento, A.F.Z, Benedetti, C.E, Murakami, M.T.
Deposit date:2016-12-06
Release date:2017-07-19
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.902 Å)
Cite:Crystal structure of citrus MAF1 in space group C 2 2 21
To Be Published

227111

건을2024-11-06부터공개중

PDB statisticsPDBj update infoContact PDBjnumon