PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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1M5P	Transition State Stabilization by a Catalytic RNA Descriptor: CALCIUM ION, RNA HAIRPIN RIBOZYME, RNA INHIBITOR SUBSTRATE, ... Authors: Rupert, P.B, Massey, A, Sigurdsson, S.T, Ferre-D'Amare, A.R. Deposit date: 2002-07-09 Release date: 2002-10-12 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Transition state stabilization by a catalytic RNA Science, 298, 2002
1DDY	MOLECULAR RECOGNITION BY THE VITAMIN B12 RNA APTAMER Descriptor: COBALAMIN, METHYLAMINE, VITAMIN B12 BINDING RNA Authors: Sussman, D, Nix, J.C, Wilson, C. Deposit date: 1999-11-12 Release date: 2000-01-01 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (3 Å) Cite: The structural basis for molecular recognition by the vitamin B 12 RNA aptamer. Nat.Struct.Biol., 7, 2000
5EW4	Crystal structure of C9ORF72 Antisense CCCCGG repeat RNA associated with Lou Gehrig's disease and frontotemporal dementia, crystallized with Sr2+ Descriptor: CHLORIDE ION, MAGNESIUM ION, POTASSIUM ION, ... Authors: Tomchick, D.R, Dodd, D.W, Gagnon, K.T, Corey, D.R. Deposit date: 2015-11-20 Release date: 2016-02-24 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.47 Å) Cite: Pathogenic C9ORF72 Antisense Repeat RNA Forms a Double Helix with Tandem C:C Mismatches. Biochemistry, 55, 2016
5EW7	Crystal structure of C9ORF72 Antisense CCCCGG repeat RNA associated with Lou Gehrig's disease and frontotemporal dementia, crystallized with Ba2+ Descriptor: BARIUM ION, MAGNESIUM ION, POTASSIUM ION, ... Authors: Tomchick, D.R, Dodd, D.W, Gagnon, K.T, Corey, D.R. Deposit date: 2015-11-20 Release date: 2016-02-24 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Pathogenic C9ORF72 Antisense Repeat RNA Forms a Double Helix with Tandem C:C Mismatches. Biochemistry, 55, 2016
1Z3E	Crystal Structure of Spx in Complex with the C-terminal Domain of the RNA Polymerase Alpha Subunit Descriptor: DNA-directed RNA polymerase alpha chain, Regulatory protein spx, SULFATE ION Authors: Newberry, K.J, Nakano, S, Zuber, P, Brennan, R.G. Deposit date: 2005-03-11 Release date: 2005-10-11 Last modified: 2017-10-11 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Crystal structure of the Bacillus subtilis anti-alpha, global transcriptional regulator, Spx, in complex with the {alpha} C-terminal domain of RNA polymerase Proc.Natl.Acad.Sci.Usa, 102, 2005
7ZX2	Tubulin-Pelophen B complex Descriptor: (3R,4S,7S,9S,11S)-3,4,11-trihydroxy-7-((R,Z)-4-(hydroxymethyl)hex-2-en-2-yl)-9-methoxy-12,12-dimethyl-6-oxa-1(1,3)-benzenacyclododecaphan-5-one, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, ... Authors: Estevez-Gallego, J, Diaz, J.F, Van der Eycken, J, Oliva, M.A. Deposit date: 2022-05-20 Release date: 2022-11-23 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Chemical modulation of microtubule structure through the laulimalide/peloruside site. Structure, 31, 2023
1S0V	Structural basis for substrate selection by T7 RNA polymerase Descriptor: 5'-D(*G*GP*GP*AP*AP*TP*CP*GP*AP*TP*AP*TP*CP*GP*CP*CP*GP*C)-3', 5'-D(*GP*TP*CP*GP*AP*TP*TP*CP*CP*C)-3', 5'-R(*AP*AP*CP*U*GP*CP*GP*GP*CP*GP*AP*U)-3', ... Authors: Temiakov, D, Patlan, V, Anikin, M, McAllister, W.T, Yokoyama, S, Vassylyev, D.G, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-01-05 Release date: 2004-02-24 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structural basis for substrate selection by t7 RNA polymerase. Cell(Cambridge,Mass.), 116, 2004
3MIJ	Crystal structure of a telomeric RNA G-quadruplex complexed with an acridine-based ligand. Descriptor: N,N'-[acridine-3,6-diylbis(1H-1,2,3-triazole-1,4-diylbenzene-3,1-diyl)]bis[3-(diethylamino)propanamide], POTASSIUM ION, RNA (5'-R(*UP*AP*GP*GP*GP*UP*UP*AP*GP*GP*GP*U)-3') Authors: Collie, G.W, Neidle, S, Parkinson, G.N. Deposit date: 2010-04-10 Release date: 2011-02-16 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural basis of telomeric RNA quadruplex-acridine ligand recognition. J.Am.Chem.Soc., 133, 2011
1GV7	ARH-I, an angiogenin/RNase A chimera Descriptor: ANGIOGENIN, CITRIC ACID Authors: Holloway, D.E, Shapiro, R, Hares, M.C, Leonidas, D.D, Acharya, K.R. Deposit date: 2002-02-06 Release date: 2002-08-22 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Guest-Host Crosstalk in an Angiogenin-RNase A Chimeric Protein Biochemistry, 41, 2002
1QLN	STRUCTURE OF A TRANSCRIBING T7 RNA POLYMERASE INITIATION COMPLEX Descriptor: BACTERIOPHAGE T7 RNA POLYMERASE, DNA (5- D (P*CP*TP*CP*CP*CP*TP*AP*TP*AP*GP*TP*GP*AP*GP*TP*CP*GP*TP* AP*TP*TP*A)-3), DNA (5-D(P*TP*AP*AP*TP*AP*CP*GP*AP*CP*TP*CP*AP*CP*TP*A)-3), ... Authors: Cheetham, G.M.T, Steitz, T.A. Deposit date: 1999-09-01 Release date: 2000-02-04 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structure of a Transcribing T7 RNA Polymerase Initiation Complex Science, 286, 1999
7JRR	Crystal structures of artificially designed homomeric RNA nanoarchitectures Descriptor: MAGNESIUM ION, MANGANESE (II) ION, RNA (50-MER) Authors: Liu, D, Shao, Y, Piccirilli, J.A, Weizmann, Y. Deposit date: 2020-08-12 Release date: 2021-09-08 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.16 Å) Cite: Structures of artificially designed discrete RNA nanoarchitectures at near-atomic resolution. Sci Adv, 7, 2021
1SYZ	Solution structure of the S. Cerevisiae U6 intramolecular stem loop (ISL) RNA at pH 5.7 Descriptor: U6 INTRAMOLECULAR STEM-LOOP RNA Authors: Reiter, N.J, Blad, H, Abildgaard, F, Butcher, S.E. Deposit date: 2004-04-02 Release date: 2004-11-09 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Dynamics in the U6 RNA Intramolecular Stem-Loop: A Base Flipping Conformational Change. Biochemistry, 43, 2004
7KUO	FANA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G Descriptor: DIGUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RNA (5'-R((LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(GFL))-3') Authors: Fang, Z, Giurgiu, C, Szostak, J.W. Deposit date: 2020-11-25 Release date: 2021-09-08 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.281 Å) Cite: Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis. Angew.Chem.Int.Ed.Engl., 60, 2021
7KUN	2'-F modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G Descriptor: DIGUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*C)-D(P*(GF2))-3') Authors: Fang, Z, Giurgiu, C, Szostak, J.W. Deposit date: 2020-11-25 Release date: 2021-09-08 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.58 Å) Cite: Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis. Angew.Chem.Int.Ed.Engl., 60, 2021
7KUK	High resolution RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G Descriptor: DIGUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') Authors: Fang, Z, Giurgiu, C, Szostak, J.W. Deposit date: 2020-11-25 Release date: 2021-09-08 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.67 Å) Cite: Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis. Angew.Chem.Int.Ed.Engl., 60, 2021
7KUL	DNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G Descriptor: DIGUANOSINE-5'-TRIPHOSPHATE, DNA/RNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*C)-D(P*G)-3'), MAGNESIUM ION Authors: Fang, Z, Giurgiu, C, Szostak, J.W. Deposit date: 2020-11-25 Release date: 2021-09-08 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.64 Å) Cite: Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis. Angew.Chem.Int.Ed.Engl., 60, 2021
1TLJ	Crystal Structure of Conserved Protein of Unknown Function SSO0622 from Sulfolobus solfataricus Descriptor: Hypothetical UPF0130 protein SSO0622, SULFATE ION Authors: Jia, Z, Wong, A.H.Y, Kudrytska, M, Skarina, T, Walker, J, Savchenko, A, Edwards, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2004-06-09 Release date: 2004-08-03 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural and functional characterization of the TYW3/Taw3 class of SAM-dependent methyltransferases. Rna, 23, 2017
8UTG	An RNA G-Quadruplex from the NS5 gene in the West Nile Virus Genome Descriptor: AMMONIUM ION, POTASSIUM ION, RNA (5'-R(*UP*AP*UP*GP*GP*AP*AP*GP*AP*GP*GP*CP*GP*GP*UP*UP*GP*GP*UP*AP*U)-3') Authors: Terrell, J.R, Le, T.T, Wilson, W.D, Siemer, J.L. Deposit date: 2023-10-31 Release date: 2024-06-19 Last modified: 2024-07-10 Method: X-RAY DIFFRACTION (1.97 Å) Cite: Structure of an RNA G-quadruplex from the West Nile virus genome. Nat Commun, 15, 2024
2V3C	Crystal structure of the SRP54-SRP19-7S.S SRP RNA complex of M. jannaschii Descriptor: 7S RNA, SIGNAL RECOGNITION 54 KDA PROTEIN, SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN Authors: Hainzl, T, Huang, S, Sauer-Eriksson, A.E. Deposit date: 2007-06-15 Release date: 2007-09-04 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Interaction of Signal-Recognition Particle 54 Gtpase Domain and Signal-Recognition Particle RNA in the Free Signal-Recognition Particle. Proc.Natl.Acad.Sci.USA, 104, 2007
3E3J	Crystal Structure of an Intermediate Complex of T7 RNAP and 8nt of RNA Descriptor: DNA (28-MER), DNA (5'-D(*DTP*DAP*DAP*DTP*DAP*DCP*DGP*DAP*DCP*DTP*DCP*DAP*DCP*DTP*DAP*DTP*DAP*DTP*DTP*DTP*DCP*DTP*DGP*DCP*DCP*DAP*DAP*DAP*DCP*DGP*DGP*DC)-3'), DNA-directed RNA polymerase, ... Authors: Durniak, K.J, Bailey, S, Steitz, T.A. Deposit date: 2008-08-07 Release date: 2008-11-04 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (6.7 Å) Cite: The structure of a transcribing t7 RNA polymerase in transition from initiation to elongation Science, 322, 2008
3CIY	Mouse Toll-like receptor 3 ectodomain complexed with double-stranded RNA Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Liu, L, Botos, I, Wang, Y, Leonard, J.N, Shiloach, J, Segal, D.M, Davies, D.R. Deposit date: 2008-03-12 Release date: 2008-05-06 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3.41 Å) Cite: Structural basis of toll-like receptor 3 signaling with double-stranded RNA. Science, 320, 2008
1D8I	X-RAY CRYSTAL STRUCTURE OF YEAST RNA TRIPHOSPHATASE IN COMPLEX WITH A SULFATE ION. Descriptor: MRNA TRIPHOSPHATASE CET1, SULFATE ION Authors: Lima, C.D, Wang, L.K, Shuman, S. Deposit date: 1999-10-24 Release date: 1999-11-29 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Structure and mechanism of yeast RNA triphosphatase: an essential component of the mRNA capping apparatus. Cell(Cambridge,Mass.), 99, 1999
2WYM	Structure of a metallo-b-lactamase Descriptor: CITRATE ANION, GLYCEROL, L-ASCORBATE-6-PHOSPHATE LACTONASE ULAG, ... Authors: Garces, F, Fernandez, F.J, Penya-Soler, E, Aguilar, J, Baldoma, L, Coll, M, Badia, J, Vega, M.C. Deposit date: 2009-11-16 Release date: 2010-04-14 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Molecular Architecture of the Mn(2+)Dependent Lactonase Ulag Reveals an Rnase-Like Metallo-Beta-Lactamase Fold and a Novel Quaternary Structure. J.Mol.Biol., 398, 2010
3EF1	The Structure of Fcp1, an essential RNA polymerase II CTD phosphatase Descriptor: MAGNESIUM ION, RNA polymerase II subunit A C-terminal domain phosphatase Authors: Ghosh, A, Lima, C.D. Deposit date: 2008-09-07 Release date: 2008-12-02 Last modified: 2017-10-25 Method: X-RAY DIFFRACTION (2.15 Å) Cite: The structure of Fcp1, an essential RNA polymerase II CTD phosphatase. Mol.Cell, 32, 2008
3E2E	Crystal Structure of an Intermediate Complex of T7 RNAP and 7nt of RNA Descriptor: DNA (28-MER), DNA (31-MER), DNA-directed RNA polymerase, ... Authors: Durniak, K.J, Bailey, S, Steitz, T.A. Deposit date: 2008-08-05 Release date: 2008-11-04 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3 Å) Cite: The structure of a transcribing t7 RNA polymerase in transition from initiation to elongation Science, 322, 2008

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