PDB: 82129 resultsInfo pagesStatus searchChemie searchBIRD

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8GTO	cryo-EM structure of Omicron BA.5 S protein in complex with XGv282 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ... Authors: Xia, X.Y, Zhang, Y.Y, Chi, X.M, Huang, B.D, Wu, L.S, Zhou, Q. Deposit date: 2022-09-08 Release date: 2023-07-12 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Comprehensive structural analysis reveals broad-spectrum neutralizing antibodies against SARS-CoV-2 Omicron variants. Cell Discov, 9, 2023
8GTH	Crystal strucuture of cyt c551 from anoxygenic phototrophic bacterium Roseiflexus castenholzii Descriptor: Cytochrome c class I, HEME C Authors: Min, Z.Z, Meng, H.L, Xu, X.L. Deposit date: 2022-09-08 Release date: 2023-09-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3.1 Å) Cite: A cytochrome c 551 mediates the cyclic electron transport chain of the anoxygenic phototrophic bacterium Roseiflexus castenholzii. Plant Commun., 5, 2024
8GT9	Selective targeting of the Beclin 2-Atg14L coiled coil complex by stapled peptides promotes autophagy and endolysosomal trafficking of GPCRs Descriptor: Beclin-2 Authors: Qiu, X, Zhao, Y. Deposit date: 2022-09-07 Release date: 2023-07-26 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2 Å) Cite: The potent BECN2-ATG14 coiled-coil interaction is selectively critical for endolysosomal degradation of GPRASP1/GASP1-associated GPCRs. Autophagy, 19, 2023
8GT7	Structure of falcipain and human Stefin A mutant complex Descriptor: 1,2-ETHANEDIOL, 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, Cystatin-A, ... Authors: Chakraborty, S, Biswas, S. Deposit date: 2022-09-07 Release date: 2023-09-13 Method: X-RAY DIFFRACTION (3.28 Å) Cite: Structure of falcipain and human Stefin A complex To Be Published
8GT5	Crystal structure of human cardiac alpha actin Q137A mutant (ADP-Pi state) in complex with fragmin F1 domain Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, Actin, ... Authors: Iwasa, M, Oda, T, Takeda, S. Deposit date: 2022-09-07 Release date: 2023-03-08 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Mutagenic analysis of actin reveals the mechanism of His161 flipping that triggers ATP hydrolysis. Front Cell Dev Biol, 11, 2023
8GT4	Crystal structure of human cardiac alpha actin Q137A mutant (AMPPNP state) in complex with fragmin F1 domain Descriptor: 1,2-ETHANEDIOL, Actin, alpha cardiac muscle 1, ... Authors: Iwasa, M, Oda, T, Takeda, S. Deposit date: 2022-09-07 Release date: 2023-03-08 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Mutagenic analysis of actin reveals the mechanism of His161 flipping that triggers ATP hydrolysis. Front Cell Dev Biol, 11, 2023
8GT3	Crystal structure of human cardiac alpha actin P109A mutant (ADP-Pi state) in complex with fragmin F1 domain Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, Actin, ... Authors: Iwasa, M, Oda, T, Takeda, S. Deposit date: 2022-09-07 Release date: 2023-03-08 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Mutagenic analysis of actin reveals the mechanism of His161 flipping that triggers ATP hydrolysis. Front Cell Dev Biol, 11, 2023
8GT2	Crystal structure of human cardiac alpha actin P109A mutant (AMPPNP state) in complex with fragmin F1 domain Descriptor: 1,2-ETHANEDIOL, Actin, alpha cardiac muscle 1, ... Authors: Iwasa, M, Oda, T, Takeda, S. Deposit date: 2022-09-07 Release date: 2023-03-08 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Mutagenic analysis of actin reveals the mechanism of His161 flipping that triggers ATP hydrolysis. Front Cell Dev Biol, 11, 2023
8GT1	Crystal structure of human cardiac alpha actin A108G mutant (ADP-Pi state) in complex with fragmin F1 domain Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ... Authors: Iwasa, M, Oda, T, Takeda, S. Deposit date: 2022-09-07 Release date: 2023-03-08 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.35 Å) Cite: Mutagenic analysis of actin reveals the mechanism of His161 flipping that triggers ATP hydrolysis. Front Cell Dev Biol, 11, 2023
8GT0	Structure of falcipain and human Stefin A complex Descriptor: 1,2-ETHANEDIOL, 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, CHLORIDE ION, ... Authors: Chakraborty, S, Biswas, S. Deposit date: 2022-09-07 Release date: 2023-09-13 Method: X-RAY DIFFRACTION (3.28 Å) Cite: Structure of falcipain and human Stefin A complex To Be Published
8GSY	X-ray structure of Clostridium perfringens pili protein B N-terminal domain Descriptor: Peptidoglycan bound protein Authors: Kamitori, S, Yamada, M, Tamai, E. Deposit date: 2022-09-07 Release date: 2023-06-07 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Structural and biochemical characterization of Clostridium perfringens pili protein B collagen-binding domains. Febs Lett., 597, 2023
8GSX	X-ray structure of Clostridium perfringens pili protein B collagen-binding domains Descriptor: ACETATE ION, pili protein Authors: Kamitori, S, Yamada, M, Tamai, E. Deposit date: 2022-09-07 Release date: 2023-06-07 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.86 Å) Cite: Structural and biochemical characterization of Clostridium perfringens pili protein B collagen-binding domains. Febs Lett., 597, 2023
8GSW	Crystal structure of human cardiac alpha actin A108G mutant (AMPPNP state) in complex with fragmin F1 domain Descriptor: 1,2-ETHANEDIOL, Actin, alpha cardiac muscle 1, ... Authors: Iwasa, M, Oda, T, Takeda, S. Deposit date: 2022-09-07 Release date: 2023-03-08 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Mutagenic analysis of actin reveals the mechanism of His161 flipping that triggers ATP hydrolysis. Front Cell Dev Biol, 11, 2023
8GSV	Crystal structure of human BAK in complex with the Pxt1 BH3 domain Descriptor: Bcl-2 homologous antagonist/killer, Peroxisomal testis-specific protein 1 Authors: Lim, D, Ku, B. Deposit date: 2022-09-07 Release date: 2023-05-10 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural basis for proapoptotic activation of Bak by the noncanonical BH3-only protein Pxt1. Plos Biol., 21, 2023
8GSU	Crystal structure of human cardiac alpha actin (WT_ADP-Pi) in complex with fragmin F1 domain Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, Actin, ... Authors: Iwasa, M, Oda, T, Takeda, S. Deposit date: 2022-09-07 Release date: 2023-03-08 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Mutagenic analysis of actin reveals the mechanism of His161 flipping that triggers ATP hydrolysis. Front Cell Dev Biol, 11, 2023
8GSQ	Structure based studies reveal an atypical antipsychotic drug candidate - Paliperidone as a potent hSOD1 modulator with implications in ALS treatment. Descriptor: (9~{R})-3-[2-[4-(6-fluoranyl-1,2-benzoxazol-3-yl)piperidin-1-yl]ethyl]-2-methyl-9-oxidanyl-6,7,8,9-tetrahydropyrido[1,2-a]pyrimidin-4-one, GLYCEROL, Superoxide dismutase [Cu-Zn], ... Authors: Aouti, S, Padmanabhan, B. Deposit date: 2022-09-06 Release date: 2023-06-14 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structure-based discovery of an antipsychotic drug, paliperidone, as a modulator of human superoxide dismutase 1: a potential therapeutic target in amyotrophic lateral sclerosis. Acta Crystallogr D Struct Biol, 79, 2023
8GSJ	APC-Asef tripeptide inhibitor Descriptor: (1R,2S)-2-phenylcyclopropanamine, 2-methylsulfanylpyrimidine-4-carbaldehyde, Adenomatous polyposis coli protein, ... Authors: Zhang, J, Wang, X.F, Song, K. Deposit date: 2022-09-06 Release date: 2023-12-27 Method: X-RAY DIFFRACTION (2.1 Å) Cite: APC-Asef tripeptide inhibitor To Be Published
8GS9	SARS-CoV-2 BA.2 spike RBD in complex bound with VacBB-551 Descriptor: Heavy chain of VacBB-551, Light chain of VacBB-551, Spike glycoprotein Authors: Liu, C.C, Ju, B, Shen, S.L, Zhang, Z. Deposit date: 2022-09-05 Release date: 2023-05-03 Last modified: 2023-11-22 Method: ELECTRON MICROSCOPY (2.66 Å) Cite: Omicron BQ.1.1 and XBB.1 unprecedentedly escape broadly neutralizing antibodies elicited by prototype vaccination. Cell Rep, 42, 2023
8GS8	cryo-EM structure of the human respiratory complex II Descriptor: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, FE2/S2 (INORGANIC) CLUSTER, FE3-S4 CLUSTER, ... Authors: Du, Z, Zhou, X, Lai, Y, Xu, J, Zhang, Y, Zhou, S, Liu, F, Gao, Y, Gong, H, Rao, Z. Deposit date: 2022-09-05 Release date: 2023-05-10 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (2.86 Å) Cite: Structure of the human respiratory complex II. Proc.Natl.Acad.Sci.USA, 120, 2023
8GS7	SOLUTION NMR STRUCTURE OF N-TERMINAL DOMAIN OF TRICONEPHILA CLAVIPES MAJOR AMPULLATE SPIDROIN 2 Descriptor: Major ampullate spidroin 2 variant 3 Authors: Oktaviani, N.A, Malay, A.D, Matsugami, A, Hayashi, F, Numata, K. Deposit date: 2022-09-05 Release date: 2023-03-15 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Unusual p K a Values Mediate the Self-Assembly of Spider Dragline Silk Proteins. Biomacromolecules, 24, 2023
8GS6	Structure of the SARS-CoV-2 BA.2.75 spike glycoprotein (closed state 1) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Anraku, Y, Tabata-Sasaki, K, Kita, S, Fukuhara, H, Maenaka, K, Hashiguchi, T. Deposit date: 2022-09-05 Release date: 2022-10-26 Last modified: 2023-03-29 Method: ELECTRON MICROSCOPY (2.86 Å) Cite: Virological characteristics of the SARS-CoV-2 Omicron BA.2.75 variant. Cell Host Microbe, 30, 2022
8GS2	Structure of the Cas7-11-Csx29-guide RNA-target RNA (non-matching PFS) complex Descriptor: ADENOSINE MONOPHOSPHATE, CHAT domain-containing protein, CRISPR-associated RAMP family protein, ... Authors: Kato, K, Okazaki, S, Ishikawa, J, Isayama, Y, Nishizawa, T, Nishimasu, H. Deposit date: 2022-09-04 Release date: 2022-11-09 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (2.84 Å) Cite: RNA-triggered protein cleavage and cell growth arrest by the type III-E CRISPR nuclease-protease. Science, 378, 2022
8GRW	Spiroplasma melliferum FtsZ F224M bound to GDP Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Cell division protein FtsZ, GUANOSINE-5'-DIPHOSPHATE Authors: Chakraborty, J, Pananghat, G. Deposit date: 2022-09-02 Release date: 2023-09-06 Method: X-RAY DIFFRACTION (2.40005422 Å) Cite: Structural basis of kinetic polarity of FtsZ from cell wall less bacterium Spiroplasma To Be Published
8GRV	Dictyostelium discoideum Lactate dehydrogenase (DicLDHA)with NAD Descriptor: ACETATE ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Putative D-lactate dehydrogenase Authors: Dao, O, Lee, K.H. Deposit date: 2022-09-02 Release date: 2022-10-26 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Dictyostelium discoideum Lactate dehydrogenase (DicLDHA) To Be Published
8GRT	Small Dipeptide Analogues developed by Co-crystal Structure of Stenotrophomonas maltophilia Dipeptidyl Peptidase 7 Descriptor: 2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID, Dipeptidyl-peptidase, TYROSINE Authors: Yasumitsu, S, Koushi, H, Akihiro, N, Yoshiyuki, Y, Wataru, O, Mizuki, S, Saori, R, Nobutada, T, Anna, M, Keiko, H, Tsuda, Y. Deposit date: 2022-09-02 Release date: 2023-09-06 Method: X-RAY DIFFRACTION (2.59 Å) Cite: Small Dipeptide Analogues Generated by Co-crystal Structure of Bacterial Dipeptidyl Peptidase 7 to Defeat Stenotrophomonas maltophilia To Be Published

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