Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5EM4
DownloadVisualize
BU of 5em4 by Molmil
Structure of CYP2B4 F244W in a ligand free conformation
Descriptor: 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE, Cytochrome P450 2B4, PROTOPORPHYRIN IX CONTAINING FE
Authors:Shah, M.B, Stout, C.D, Halpert, J.R.
Deposit date:2015-11-05
Release date:2016-03-23
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.02 Å)
Cite:Coumarin Derivatives as Substrate Probes of Mammalian Cytochromes P450 2B4 and 2B6: Assessing the Importance of 7-Alkoxy Chain Length, Halogen Substitution, and Non-Active Site Mutations.
Biochemistry, 55, 2016
6MVV
DownloadVisualize
BU of 6mvv by Molmil
NavAb voltage-gated sodium channel, I217C/F203A
Descriptor: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Ion transport protein, PHOSPHATE ION
Authors:Lenaeus, M.J, Catterall, W.A.
Deposit date:2018-10-28
Release date:2018-12-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Fenestrations control resting-state block of a voltage-gated sodium channel.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6MUH
DownloadVisualize
BU of 6muh by Molmil
Fluoroacetate dehalogenase, room temperature structure solved by serial 1 degree oscillation crystallography
Descriptor: Fluoroacetate dehalogenase
Authors:Finke, A.D, Wierman, J.L, Pare-Labrosse, O, Sarrachini, A, Besaw, J, Mehrabi, P, Gruner, S.M, Miller, R.J.D.
Deposit date:2018-10-23
Release date:2019-03-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Fixed-target serial oscillation crystallography at room temperature.
IUCrJ, 6, 2019
6N01
DownloadVisualize
BU of 6n01 by Molmil
Structure of apo AztD from Citrobacter koseri
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, AztD Protein, ...
Authors:Yukl, E.T, Neupane, D.P.
Deposit date:2018-11-06
Release date:2019-09-18
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Crystal structures of AztD provide mechanistic insights into direct zinc transfer between proteins.
Commun Biol, 2, 2019
3X2N
DownloadVisualize
BU of 3x2n by Molmil
Proton relay pathway in inverting cellulase
Descriptor: Endoglucanase V-like protein, SULFATE ION
Authors:Nakamura, A, Ishida, T, Fushinobu, S, Igarashi, K, Samejima, M.
Deposit date:2014-12-22
Release date:2015-10-14
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:"Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography.
Sci Adv, 1, 2015
4DUU
DownloadVisualize
BU of 4duu by Molmil
The X-ray Crystal Structure of Full-Length type I Human Plasminogen
Descriptor: Plasminogen
Authors:Law, R.H.P, Caradoc-Davies, T, Whisstock, J.C.
Deposit date:2012-02-22
Release date:2012-03-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (5.2 Å)
Cite:The X-ray crystal structure of full-length human plasminogen
Cell Rep, 1, 2012
1S5Z
DownloadVisualize
BU of 1s5z by Molmil
NDP kinase in complex with adenosine phosphonoacetic acid
Descriptor: ADENOSINE PHOSPHONOACETIC ACID, Nucleoside diphosphate kinase, cytosolic, ...
Authors:Chen, Y, Morera, S, Pasti, C, Angusti, A, Solaroli, N, Veron, M, Janin, J, Manfredini, S, Deville-Bonne, D.
Deposit date:2004-01-22
Release date:2005-02-01
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Adenosine phosphonoacetic acid is slowly metabolized by NDP kinase.
Med.Chem., 1, 2005
2LK5
DownloadVisualize
BU of 2lk5 by Molmil
Solution structure of the Zn(II) form of Desulforedoxin
Descriptor: Desulforedoxin, ZINC ION
Authors:Goodfellow, B.J, Tavares, P, Romao, M.J, Czaja, C, Rusnak, F, Legall, J, Moura, I, Moura, J.J.G.
Deposit date:2011-10-06
Release date:2012-01-25
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The solution structure of desulforedoxin, a simple iron-sulfur protein - An NMR study of the zinc derivative
J.BIOL.INORG.CHEM., 1, 1996
1GD3
DownloadVisualize
BU of 1gd3 by Molmil
refined solution structure of human cystatin A
Descriptor: CYSTATIN A
Authors:Shimba, N, Kariya, E, Tate, S, Kaji, H, Kainosho, M.
Deposit date:2000-09-08
Release date:2001-09-08
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structural comparison between wild-type and P25S human cystatin A by NMR spectroscopy. Does this mutation affect the a-helix conformation ?
J.STRUCT.FUNCT.GENOM., 1, 2000
4YMK
DownloadVisualize
BU of 4ymk by Molmil
Crystal Structure of Stearoyl-Coenzyme A Desaturase 1
Descriptor: Acyl-CoA desaturase 1, STEAROYL-COENZYME A, ZINC ION, ...
Authors:Bai, Y, McCoy, J.G, Rajashankar, K.R, Zhou, M.
Deposit date:2015-03-06
Release date:2015-06-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.605 Å)
Cite:X-ray structure of a mammalian stearoyl-CoA desaturase.
Nature, 524, 2015
9FK9
DownloadVisualize
BU of 9fk9 by Molmil
The structure of XT6 from G.proteiniphilus T-6: The E265G/Q238A/W241A mutant
Descriptor: CHLORIDE ION, Endo-1,4-beta-xylanase, ZINC ION, ...
Authors:Hadad, N, Chmelnik, O, Dessau, M, Shoham, Y, Shoham, G.
Deposit date:2024-06-02
Release date:2025-06-18
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The structure of XT6 from G.proteiniphilus T-6: The E265G/Q238A/W241A mutant
To Be Published
6FW2
DownloadVisualize
BU of 6fw2 by Molmil
Crystal Structure of human mARC1
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MOLYBDATE ION, Mitochondrial amidoxime-reducing component 1,Endolysin,Mitochondrial amidoxime-reducing component 1, ...
Authors:Kubitza, C, Scheidig, A.
Deposit date:2018-03-05
Release date:2018-10-31
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Crystal structure of human mARC1 reveals its exceptional position among eukaryotic molybdenum enzymes.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
8HTU
DownloadVisualize
BU of 8htu by Molmil
Cryo-EM structure of PpPSI-L
Descriptor: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ...
Authors:Li, M, Pan, X.W, Sun, H.Y.
Deposit date:2022-12-21
Release date:2023-08-02
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (2.87 Å)
Cite:Structural insights into the assembly and energy transfer of the Lhcb9-dependent photosystem I from moss Physcomitrium patens.
Nat.Plants, 9, 2023
6DUI
DownloadVisualize
BU of 6dui by Molmil
Crystal structure of LpxC from Pseudomonas aeruginosa in complex with PT801
Descriptor: (2R)-4-{4-[4-(benzyloxy)phenyl]-2-oxopyridin-1(2H)-yl}-N-hydroxy-2-methyl-2-(methylsulfonyl)butanamide, (2S)-4-{4-[4-(benzyloxy)phenyl]-2-oxopyridin-1(2H)-yl}-N-hydroxy-2-methyl-2-(methylsulfonyl)butanamide, 1,2-ETHANEDIOL, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2018-06-20
Release date:2019-06-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of LpxC from Pseudomonas aeruginosa in complex with PT801
to be published
6DGT
DownloadVisualize
BU of 6dgt by Molmil
Selective PI3K beta inhibitor bound to PI3K delta
Descriptor: 4-[1-(5,8-difluoroquinolin-4-yl)-2-methyl-4-(4H-1,2,4-triazol-3-yl)-1H-benzimidazol-6-yl]-3-fluoropyridin-2-amine, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform
Authors:Somoza, J, Villasenor, A, McGrath, M.
Deposit date:2018-05-18
Release date:2018-08-01
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.601 Å)
Cite:Atropisomerism by Design: Discovery of a Selective and Stable Phosphoinositide 3-Kinase (PI3K) beta Inhibitor.
J. Med. Chem., 61, 2018
9CJQ
DownloadVisualize
BU of 9cjq by Molmil
X-ray crystal structure of SARS-CoV-2 main protease quadruple mutants in complex with Ensitrelvir
Descriptor: 1,2-ETHANEDIOL, 6-[(6-chloranyl-2-methyl-indazol-5-yl)amino]-3-[(1-methyl-1,2,4-triazol-3-yl)methyl]-1-[[2,4,5-tris(fluoranyl)phenyl]methyl]-1,3,5-triazine-2,4-dione, main protease
Authors:Esler, M.A, Shi, K, Harris, R.S, Aihara, H.
Deposit date:2024-07-07
Release date:2025-07-09
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:X-ray crystal structure of SARS-CoV-2 main protease quadruple mutants in complex with Ensitrelvir
To Be Published
4Q73
DownloadVisualize
BU of 4q73 by Molmil
Crystal Structure of Bradyrhizobium japonicum Proline Utilization A (PutA) Mutant D778Y
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, Proline dehydrogenase, ...
Authors:Tanner, J.J, Luo, M, Pemberton, T.A.
Deposit date:2014-04-23
Release date:2014-08-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Kinetic and Structural Characterization of Tunnel-Perturbing Mutants in Bradyrhizobium japonicum Proline Utilization A.
Biochemistry, 53, 2014
9CJU
DownloadVisualize
BU of 9cju by Molmil
Structure of SARS-CoV-2 main protease in complex with Bofutrelvir in orthorhombic form
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Non-structural protein 7, ...
Authors:Esler, M.A, Shi, K, Harris, R.S, Aihara, H.
Deposit date:2024-07-07
Release date:2025-07-09
Last modified:2025-07-23
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Structural basis for varying drug resistance of SARS-CoV-2 M pro E166 variants.
Mbio, 16, 2025
6GK9
DownloadVisualize
BU of 6gk9 by Molmil
Inhibited structure of IMPDH from Pseudomonas aeruginosa
Descriptor: (5~{S})-7-azanyl-5-(4-chlorophenyl)-2,4-bis(oxidanylidene)-1,5-dihydropyrano[2,3-d]pyrimidine-6-carbonitrile, Inosine-5'-monophosphate dehydrogenase, SULFATE ION
Authors:Labesse, G, Alexandre, T, Haouz, A, Munier-Lehmann, H.
Deposit date:2018-05-18
Release date:2019-02-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:First-in-class allosteric inhibitors of bacterial IMPDHs.
Eur J Med Chem, 167, 2019
6T9R
DownloadVisualize
BU of 6t9r by Molmil
Aplysia californica AChBP in complex with a cytisine derivative
Descriptor: (1~{R},9~{S})-5-(3-oxidanylpropyl)-7,11-diazatricyclo[7.3.1.0^{2,7}]trideca-2,4-dien-6-one, 2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylcholine binding protein, ...
Authors:Davis, S, Hunter, W.N.
Deposit date:2019-10-28
Release date:2020-02-12
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:The thermodynamic profile and molecular interactions of a C(9)-cytisine derivative-binding acetylcholine-binding protein from Aplysia californica.
Acta Crystallogr.,Sect.F, 76, 2020
6D7K
DownloadVisualize
BU of 6d7k by Molmil
Complex structure of Methane monooxygenase hydroxylase in complex with inhibitory subunit
Descriptor: FE (III) ION, FORMIC ACID, HEXANE-1,6-DIOL, ...
Authors:Kim, H, Lee, S.J, Cho, U.-S.
Deposit date:2018-04-24
Release date:2019-06-26
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:MMOD-induced structural changes of hydroxylase in soluble methane monooxygenase.
Sci Adv, 5, 2019
6D9R
DownloadVisualize
BU of 6d9r by Molmil
The substrate-bound crystal structure of HPRT (hypoxanthine phosphoribosyltransferase)
Descriptor: 1,2-ETHANEDIOL, 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, 9-DEAZAGUANINE, ...
Authors:Satyshur, K.A, Wolak, C, Anderson, B, Dubiel, K, Keck, J.L.
Deposit date:2018-04-30
Release date:2019-05-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Evolution of (p)ppGpp-HPRT regulation through diversification of an allosteric oligomeric interaction.
Elife, 8, 2019
8CMO
DownloadVisualize
BU of 8cmo by Molmil
Cryo-EM structure of the Photosystem I - LHCI supercomplex from Coelastrella sp.
Descriptor: (1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol, (2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate, (2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate, ...
Authors:Fadeeva, M, Klaiman, D, Nelson, N.
Deposit date:2023-02-20
Release date:2024-03-06
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (2.81 Å)
Cite:Cryo-EM structure of the Photosystem I - LHCI supercomplex from Coelastrella sp.
To Be Published
6DBC
DownloadVisualize
BU of 6dbc by Molmil
Second bromodomain of Human BRD2 with a Tetrahydroquinoline analogue
Descriptor: 1,2-ETHANEDIOL, 1-[(2S,4R)-4-[(2-chlorophenyl)amino]-2-methyl-6-(1H-pyrazol-3-yl)-3,4-dihydroquinolin-1(2H)-yl]ethan-1-one, Bromodomain-containing protein 2
Authors:White, S.W, Yun, M.
Deposit date:2018-05-03
Release date:2019-11-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Second bromodomain of Human BRD2 with a Tetrahydroquinoline analogue
To Be Published
4CCS
DownloadVisualize
BU of 4ccs by Molmil
The structure of CbiX, the terminal Enzyme for Biosynthesis of Siroheme in Denitrifying Bacteria
Descriptor: 1,2-ETHANEDIOL, CBIX, D-MALATE, ...
Authors:Bali, S, Rollauer, S.E, Roversi, P, Raux-Deery, E, Lea, S.M, Warren, M.J, Ferguson, S.J.
Deposit date:2013-10-25
Release date:2014-04-09
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Identification and Characterization of the 'Missing' Terminal Enzyme for Siroheme Biosynthesis in Alpha-Proteobacteria.
Mol.Microbiol., 92, 2014

243531

건을2025-10-22부터공개중

PDB statisticsPDBj update infoContact PDBjnumon