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4XVX
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BU of 4xvx by Molmil
Crystal structure of an acyl-ACP dehydrogenase
Descriptor: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, Acyl-[acyl-carrier-protein] dehydrogenase MbtN, DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, ...
Authors:Chai, A, Johnston, J.M, Bunker, R.D, Lott, J.S, Baker, E.N, TB Structural Genomics Consortium (TBSGC)
Deposit date:2015-01-28
Release date:2015-02-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A covalent adduct of MbtN, an acyl-ACP dehydrogenase from Mycobacterium tuberculosis, reveals an unusual acyl-binding pocket.
Acta Crystallogr.,Sect.D, 71, 2015
4V0J
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BU of 4v0j by Molmil
The channel-block Ser202Glu, Thr104Lys double mutant of Stearoyl-ACP- Desaturase from Castor bean (Ricinus communis)
Descriptor: ACYL-[ACYL-CARRIER-PROTEIN] DESATURASE, CHLOROPLASTIC, FE (II) ION, ...
Authors:Moche, M, Guy, J, Whittle, E, Lindqvist, Y, Shanklin, J.
Deposit date:2014-09-17
Release date:2015-08-26
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Half-of-the-Sites Reactivity of the Castor Delta9-18:0-Acp Desaturase.
Plant Physiol., 169, 2015
7OMD
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BU of 7omd by Molmil
Crystal structure of azacoelenterazine-bound Renilla reniformis luciferase variant RLuc8-D162A
Descriptor: 6-(4-hydroxyphenyl)-2-[(4-hydroxyphenyl)methyl]-8-(phenylmethyl)-[1,2,4]triazolo[4,3-a]pyrazin-3-one, CHLORIDE ION, Coelenterazine h 2-monooxygenase, ...
Authors:Schenkmayerova, A, Janin, Y.L, Marek, M.
Deposit date:2021-05-21
Release date:2022-06-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.601 Å)
Cite:Catalytic mechanism for Renilla-type luciferases
Nat Catal, 2023
8CJY
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BU of 8cjy by Molmil
[FeFe]-hydrogenase CpI from Clostridium pasteurianum, variant S357T
Descriptor: CHLORIDE ION, FE2/S2 (INORGANIC) CLUSTER, GLYCEROL, ...
Authors:Brocks, C, Duan, J, Hofmann, E, Happe, T.
Deposit date:2023-02-13
Release date:2023-10-25
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A Dynamic Water Channel Affects O 2 Stability in [FeFe]-Hydrogenases.
Chemsuschem, 17, 2024
8CVD
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BU of 8cvd by Molmil
Structure of Hyoscyamine 6-beta Hydroxylase in complex with iron, succinate, and scopolamine
Descriptor: (1R,2R,4S,5S,7s)-9-methyl-3-oxa-9-azatricyclo[3.3.1.0~2,4~]nonan-7-yl (2S)-3-hydroxy-2-phenylpropanoate, 1,2-ETHANEDIOL, FE (II) ION, ...
Authors:Wenger, E.S, Boal, A.K, Bollinger, J.M, Krebs, C.
Deposit date:2022-05-18
Release date:2023-11-22
Last modified:2025-05-21
Method:X-RAY DIFFRACTION (1.717 Å)
Cite:Optimized Substrate Positioning Enables Switches in the C-H Cleavage Site and Reaction Outcome in the Hydroxylation-Epoxidation Sequence Catalyzed by Hyoscyamine 6 beta-Hydroxylase.
J.Am.Chem.Soc., 146, 2024
8CVA
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BU of 8cva by Molmil
Structure of Hyoscyamine 6-beta Hydroxylase in complex with iron, succinate, and 6-OH-hyoscyamine
Descriptor: (1R,3S,5R,6S)-6-hydroxy-8-methyl-8-azabicyclo[3.2.1]octan-3-yl (2S)-3-hydroxy-2-phenylpropanoate, 1,2-ETHANEDIOL, FE (II) ION, ...
Authors:Wenger, E.S, Boal, A.K, Bollinger, J.M, Krebs, C.
Deposit date:2022-05-18
Release date:2023-11-22
Last modified:2025-05-21
Method:X-RAY DIFFRACTION (1.581 Å)
Cite:Optimized Substrate Positioning Enables Switches in the C-H Cleavage Site and Reaction Outcome in the Hydroxylation-Epoxidation Sequence Catalyzed by Hyoscyamine 6 beta-Hydroxylase.
J.Am.Chem.Soc., 146, 2024
8F6T
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BU of 8f6t by Molmil
Cryo-EM structure of alkane 1-monooxygenase AlkB-AlkG complex from Fontimonas thermophila
Descriptor: Alkane 1-monooxygenase, DODECANE, FE (III) ION
Authors:Chai, J, Guo, G, McSweeney, S, Shanklin, J, Liu, Q.
Deposit date:2022-11-17
Release date:2023-04-05
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.76 Å)
Cite:Structural basis for enzymatic terminal C-H bond functionalization of alkanes.
Nat.Struct.Mol.Biol., 30, 2023
6QU0
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BU of 6qu0 by Molmil
Structure of azoreductase from Bacillus sp. A01
Descriptor: FLAVIN MONONUCLEOTIDE, FMN-dependent NADH-azoreductase, GLYCEROL, ...
Authors:Savino, S, Fraaije, M.W.
Deposit date:2019-02-26
Release date:2020-02-05
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mechanistic and Crystallographic Studies of Azoreductase AzoA fromBacillus wakoensisA01.
Acs Chem.Biol., 15, 2020
6OC0
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BU of 6oc0 by Molmil
Crystal structure of human DHODH with OSU-03012
Descriptor: Dihydroorotate dehydrogenase (quinone), mitochondrial, FLAVIN MONONUCLEOTIDE, ...
Authors:Durst, M.A, Lavie, A.
Deposit date:2019-03-21
Release date:2019-11-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Metabolic Modifier Screen Reveals Secondary Targets of Protein Kinase Inhibitors within Nucleotide Metabolism.
Cell Chem Biol, 27, 2020
8EVN
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BU of 8evn by Molmil
Sulfatase from Mycobacterium tuberculosis (Rv3406) in complex with N-oxalylglycine (NOG)
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Alpha-ketoglutarate-dependent sulfate ester dioxygenase, N-OXALYLGLYCINE, ...
Authors:Juan, T.-J, Leung, I, Squire, C.J.
Deposit date:2022-10-20
Release date:2023-10-25
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.644 Å)
Cite:Sulfatase from Mycobacterium tuberculosis (Rv3406) in complex with inhibitors NOG and FG2216
To Be Published
6OC1
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BU of 6oc1 by Molmil
Crystal structure of human DHODH with TAK-632
Descriptor: Dihydroorotate dehydrogenase (quinone), mitochondrial, FLAVIN MONONUCLEOTIDE, ...
Authors:Durst, M.A, Lavie, A.
Deposit date:2019-03-21
Release date:2019-11-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Metabolic Modifier Screen Reveals Secondary Targets of Protein Kinase Inhibitors within Nucleotide Metabolism.
Cell Chem Biol, 27, 2020
4XF3
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BU of 4xf3 by Molmil
cysteine dioxygenase variant - Y157F at pH 8.0 with cysteine and dithionite
Descriptor: CYSTEINE, Cysteine dioxygenase type 1, FE (III) ION
Authors:Driggers, C.M, Karplus, P.A.
Deposit date:2014-12-25
Release date:2016-04-06
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure-Based Insights into the Role of the Cys-Tyr Crosslink and Inhibitor Recognition by Mammalian Cysteine Dioxygenase.
J. Mol. Biol., 428, 2016
4XF1
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BU of 4xf1 by Molmil
cysteine dioxygenase variant - Y157F at pH 8.0 with cysteine
Descriptor: CYSTEINE, Cysteine dioxygenase type 1, FE (III) ION
Authors:Driggers, C.M, Karplus, P.A.
Deposit date:2014-12-25
Release date:2016-04-06
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure-Based Insights into the Role of the Cys-Tyr Crosslink and Inhibitor Recognition by Mammalian Cysteine Dioxygenase.
J. Mol. Biol., 428, 2016
4XFI
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BU of 4xfi by Molmil
cysteine dioxygenase variant - Y157F at pH 6.2 with homocysteine
Descriptor: 2-AMINO-4-MERCAPTO-BUTYRIC ACID, Cysteine dioxygenase type 1, FE (III) ION
Authors:Driggers, C.M, Karplus, P.A.
Deposit date:2014-12-26
Release date:2016-02-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure-Based Insights into the Role of the Cys-Tyr Crosslink and Inhibitor Recognition by Mammalian Cysteine Dioxygenase.
J. Mol. Biol., 428, 2016
4YJF
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BU of 4yjf by Molmil
Crystal structure of DAAO(Y228L/R283G) variant (S-methylbenzylamine binding form)
Descriptor: (1S)-1-phenylethanamine, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Nakano, S, Yasukawa, K, Kawahara, N, Ishitsubo, E, Tokiwa, H, Asano, Y.
Deposit date:2015-03-03
Release date:2016-04-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of DAAO variant
To Be Published
7CN3
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BU of 7cn3 by Molmil
2,5-dihydroxypridine Dioxygenase in complex with 2,5-dihydroxypridine and product N-formylmaleamic acid
Descriptor: (~{Z})-4-formamido-4-oxidanylidene-but-2-enoic acid, 1,2-ETHANEDIOL, 2,5-dihydroxypyridine 5,6-dioxygenase, ...
Authors:Liu, G.Q, Tang, H.Z.
Deposit date:2020-07-30
Release date:2020-12-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:2,5-dihydroxypridine Dioxygenase in complex with 2,5-dihydroxypridine and product N-formylmaleamic acid
Nat Commun, 2020
6NMQ
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BU of 6nmq by Molmil
Hypoxia-Inducible Factor (HIF) Prolyl Hydroxylase 2 (PHD2) in Complex with the Carboxamide Analog JNJ43058171
Descriptor: Egl nine homolog 1, FE (II) ION, N-(4-oxo-1,4-dihydrocinnoline-3-carbonyl)glycine
Authors:Bembenek, S.D, Mirzadegan, T.
Deposit date:2019-01-11
Release date:2019-04-24
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Beyond Traditional Structure-Based Drug Design: The Role of Iron Complexation, Strain, and Water in the Binding of Inhibitors for Hypoxia-Inducible Factor Prolyl Hydroxylase 2.
Acs Omega, 4, 2019
4WHS
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BU of 4whs by Molmil
4-fluorocatechol bound to Protocatechuate 3,4-dioxygenase (pseudomonas putida) at pH 8.5
Descriptor: 4-fluorobenzene-1,2-diol, BETA-MERCAPTOETHANOL, CHLORIDE ION, ...
Authors:Knoot, C.J, Purpero, V.M, Lipscomb, J.D.
Deposit date:2014-09-23
Release date:2014-12-31
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Crystal structures of alkylperoxo and anhydride intermediates in an intradiol ring-cleaving dioxygenase.
Proc.Natl.Acad.Sci.USA, 112, 2015
7OLQ
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BU of 7olq by Molmil
Dioxygenase AsqJ mutant (V72I) in complex with 2 and Tris
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-Methoxydehydrocyclopeptin, BROMIDE ION, ...
Authors:Auman, D, Mader, S.L, Ecker, F, Dorst, K, Braeuer, A, Widmalm, G, Groll, M, Kaila, V.R.I.
Deposit date:2021-05-20
Release date:2022-06-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Peroxy Intermediate Drives Carbon Bond Activation in the Dioxygenase AsqJ.
J.Am.Chem.Soc., 144, 2022
6Y9D
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BU of 6y9d by Molmil
Crystal structure of the quaternary ammonium Rieske monooxygenase CntA in complex with substrate L-Carnitine
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CARNITINE, Carnitine monooxygenase oxygenase subunit, ...
Authors:Quareshy, M, Shanmugam, M, Bugg, T.D, Cameron, A, Chen, Y.
Deposit date:2020-03-06
Release date:2020-11-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural basis of carnitine monooxygenase CntA substrate specificity, inhibition, and intersubunit electron transfer.
J.Biol.Chem., 296, 2020
8YS6
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BU of 8ys6 by Molmil
Helicobacter pylori OorDABC in complex with Napabucasin
Descriptor: 2-ethanoylbenzo[f][1]benzofuran-4,9-dione, 2-oxoglutarate ferredoxin oxidoreductase subunit beta, 2-oxoglutarate synthase subunit alpha, ...
Authors:Lan, W, Gao, Y, Bi, H.
Deposit date:2024-03-22
Release date:2025-07-02
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:Helicobacter pylori OorDABC in complex with Napabucasin
To Be Published
4WZC
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BU of 4wzc by Molmil
Understanding Extradiol Dioxygenase Mechanism in NAD+ Biosynthesis by Viewing Catalytic Intermediates - 2,3-cis-4,5-trans ACMS bound to I142A mutant HAO
Descriptor: (2E)-2-amino-3-[(1E)-3-oxoprop-1-en-1-yl]but-2-enedioic acid, 3-hydroxyanthranilate 3,4-dioxygenase, FE (II) ION
Authors:Liu, F, Liu, A.
Deposit date:2014-11-19
Release date:2016-02-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.842 Å)
Cite:Probing Extradiol Dioxygenase Mechanism in NAD+ Biosynthesis by Viewing Reaction Cycle Intermediates
To Be Published
7REI
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BU of 7rei by Molmil
The crystal structure of nickel bound human ADO C18S C239S variant
Descriptor: 2-aminoethanethiol dioxygenase, GLYCEROL, NICKEL (II) ION
Authors:Wang, Y, Shin, I, Li, J, Liu, A.
Deposit date:2021-07-12
Release date:2021-09-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Crystal structure of human cysteamine dioxygenase provides a structural rationale for its function as an oxygen sensor.
J.Biol.Chem., 297, 2021
8DQV
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BU of 8dqv by Molmil
The 1.52 angstrom CryoEM structure of the [NiFe]-hydrogenase Huc from Mycobacterium smegmatis - catalytic dimer (Huc2S2L)
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, Hydrogenase-2, ...
Authors:Grinter, R, Venugopal, H, Kropp, A, Greening, C.
Deposit date:2022-07-20
Release date:2023-01-04
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (1.52 Å)
Cite:Structural basis for bacterial energy extraction from atmospheric hydrogen.
Nature, 615, 2023
6WCG
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BU of 6wcg by Molmil
Crystal structure of Laccase from Thermus thermophilus HB27 with an open conformation of beta-hairpin (Average deposited dose 10.33 MGy)
Descriptor: COPPER (II) ION, Laccase, PENTAETHYLENE GLYCOL
Authors:Miranda-Blancas, R, Rudino-Pinera, E.
Deposit date:2020-03-30
Release date:2021-03-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Dynamic behavior of beta-hairpin loop at laccase of Thermus thermophilus at 1.7 angstroms resolution
To Be Published

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