PDB: 92137 resultsInfo pagesStatus searchChemie searchBIRD

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2ZDQ	Crystal structure of D-Alanine:D-Alanine Ligase with ATP and D-Alanine:D-Alanine from Thermus thermophius HB8 Descriptor: ADENOSINE-5'-TRIPHOSPHATE, D-ALANINE, D-alanine--D-alanine ligase Authors: Kitamuta, Y, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-11-27 Release date: 2008-05-27 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal structure of D-Alanine:D-Alanine Ligase with ATP and D-Alanine:D-Alanine from Thermus thermophius HB8 To be Published
2ZDH	Crystal structure of D-Alanine:D-Alanine Ligase with ADP and D-Alanine from Thermus thermophius HB8 Descriptor: ADENOSINE-5'-DIPHOSPHATE, D-ALANINE, D-alanine--D-alanine ligase, ... Authors: Kitamuta, Y, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-11-22 Release date: 2008-05-27 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of D-Alanine:D-Alanine Ligase with ADP and D-Alanine from Thermus thermophius HB8 To be Published
2M0U	Complex structure of C-terminal CFTR peptide and extended PDZ1 domain from NHERF1 Descriptor: C-terminal CFTR peptide, Na(+)/H(+) exchange regulatory cofactor NHE-RF1 Authors: Bhattacharya, S, Ju, J.H, Cowburn, D, Bu, Z. Deposit date: 2012-11-06 Release date: 2013-04-24 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Ligand-Induced Dynamic Changes in Extended PDZ Domains from NHERF1. J.Mol.Biol., 425, 2013
2HUW	X-ray crystal structure of the Grb2 SH2 domain complexed to a constrained and cyclopropane-derived ligand Descriptor: Growth factor receptor-bound protein 2, N-({(1R,2R,3S)-2-(methylcarbamoyl)-3-[4-(phosphonooxy)phenyl]cyclopropyl}carbonyl)-L-valyl-L-aspartamide, PHOSPHATE ION Authors: Benfield, A.P, Martin, S.F. Deposit date: 2006-07-27 Release date: 2006-08-15 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Ligand Preorganization May Be Accompanied by Entropic Penalties in Protein-Ligand Interactions. Angew.Chem.Int.Ed.Engl., 45, 2006
3L2J	Dimeric structure of the ligand-free extracellular domain of the human parathyroid hormone receptor (PTH1R) Descriptor: Fusion protein of Maltose-binding periplasmic protein and Parathyroid hormone/parathyroid hormone-related peptide receptor, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose Authors: Pioszak, A.A, Xu, H.E. Deposit date: 2009-12-15 Release date: 2010-02-02 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.24 Å) Cite: Dimeric arrangement of the parathyroid hormone receptor and a structural mechanism for ligand-induced dissociation. J.Biol.Chem., 285, 2010
3UAG	UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ADENOSINE-5'-DIPHOSPHATE, MANGANESE (II) ION, ... Authors: Bertrand, J.A, Auger, G, Martin, L, Fanchon, E, Blanot, D, Le Beller, D, Van Heijenoort, J, Dideberg, O. Deposit date: 1999-02-24 Release date: 2000-02-25 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.77 Å) Cite: Determination of the MurD mechanism through crystallographic analysis of enzyme complexes. J.Mol.Biol., 289, 1999
1PDC	REFINED SOLUTION STRUCTURE AND LIGAND-BINDING PROPERTIES OF PDC-109 DOMAIN B. A COLLAGEN-BINDING TYPE II DOMAIN Descriptor: SEMINAL FLUID PROTEIN PDC-109 Authors: Llinas, M, Constantine, K.L, Patthy, L. Deposit date: 1991-10-10 Release date: 1994-01-31 Last modified: 2017-11-29 Method: SOLUTION NMR Cite: Refined solution structure and ligand-binding properties of PDC-109 domain b. A collagen-binding type II domain. J.Mol.Biol., 223, 1992
4B7H	Structure of a highdose liganded bacterial catalase Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CATALASE, CHLORIDE ION, ... Authors: Gumiero, A, Walsh, M. Deposit date: 2012-08-20 Release date: 2013-08-28 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.39 Å) Cite: A Structural and Dynamic Investigation of the Inhibition of Catalase by Nitric Oxide. Org.Biomol.Chem., 11, 2013
3KJ6	Crystal structure of a Methylated beta2 Adrenergic Receptor-Fab complex Descriptor: Beta-2 adrenergic receptor, Fab heavy chain, Fab light chain, ... Authors: Bokoch, M.P, Zou, Y, Rasmussen, S.G.F, Liu, C.W, Nygaard, R, Rosenbaum, D.M, Fung, J.J, Choi, H.-J, Thian, F.S, Kobilka, T.S, Puglisi, J.D, Weis, W.I, Pardo, L, Prosser, S, Mueller, L, Kobilka, B.K. Deposit date: 2009-11-02 Release date: 2010-02-16 Last modified: 2021-10-13 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Ligand-specific regulation of the extracellular surface of a G-protein-coupled receptor. Nature, 463, 2010
4ZMJ	Crystal Structure of Ligand-Free BG505 SOSIP.664 HIV-1 Env Trimer Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp160, ... Authors: Kwon, Y.D, Kwong, P.D. Deposit date: 2015-05-04 Release date: 2015-06-24 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.31 Å) Cite: Crystal structure, conformational fixation and entry-related interactions of mature ligand-free HIV-1 Env. Nat.Struct.Mol.Biol., 22, 2015
4CBZ	Notch ligand, Jagged-1, contains an N-terminal C2 domain Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, PROTEIN JAGGED-1, alpha-L-fucopyranose Authors: Chilakuri, C.R, Sheppard, D, Ilagan, M.X.G, Holt, L.R, Abbott, F, Liang, S, Kopan, R, Handford, P.A, Lea, S.M. Deposit date: 2013-10-17 Release date: 2013-11-27 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural Analysis Uncovers Lipid-Binding Properties of Notch Ligands Cell Rep., 5, 2013
5W90	FEZ-1 metallo-beta-lactamase from Legionella gormanii modelled with unknown ligand Descriptor: FEZ-1 protein, GLYCEROL, SULFATE ION, ... Authors: Garcia-Saez, I, Mercuri, P.S, Kahn, R, Shabalin, I.G, Raczynska, J.E, Jaskolski, M, Minor, W, Papamicael, C, Frere, J.M, Galleni, M, Dideberg, O. Deposit date: 2017-06-22 Release date: 2018-06-20 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Three-dimensional structure of FEZ-1, a monomeric subclass B3 metallo-beta-lactamase from Fluoribacter gormanii, in native form and in complex with D-captopril. J. Mol. Biol., 325, 2003
4CC1	Notch ligand, Jagged-1, contains an N-terminal C2 domain Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... Authors: Chilakuri, C.R, Sheppard, D, Ilagan, M.X.G, Holt, L.R, Abbott, F, Liang, S, Kopan, R, Handford, P.A, Lea, S.M. Deposit date: 2013-10-17 Release date: 2013-11-27 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.84 Å) Cite: Structural Analysis Uncovers Lipid-Binding Properties of Notch Ligands Cell Rep., 5, 2013
4JE0	Structures of SdrD from Staphylococcus aureus reveal the molecular mechanism of how the cell surface receptors recognize their ligands Descriptor: CALCIUM ION, Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrD Authors: Wang, X, Ge, J, Yang, M. Deposit date: 2013-02-25 Release date: 2013-06-19 Last modified: 2019-12-04 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structures of SdrD from Staphylococcus aureus reveal the molecular mechanism of how the cell surface receptors recognize their ligands Protein Cell, 4, 2013
4C8F	mouse ZNRF3 ectodomain crystal form IV Descriptor: E3 UBIQUITIN-PROTEIN LIGASE ZNRF3 Authors: Zebisch, M, Jones, E.Y. Deposit date: 2013-09-30 Release date: 2013-11-20 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.69 Å) Cite: Structural and Molecular Basis of Znrf3/Rnf43 Transmembrane Ubiquitin Ligase Inhibition by the Wnt Agonist R-Spondin. Nat.Commun., 4, 2013
4C9A	Mouse ZNRF3 ectodomain in complex with Xenopus RSPO2 Fu1-Fu2 (Seleno Met) crystal form I Descriptor: E3 UBIQUITIN-PROTEIN LIGASE ZNRF3, R-SPONDIN-2 Authors: Zebisch, M, Jones, E.Y. Deposit date: 2013-10-02 Release date: 2013-11-20 Last modified: 2022-11-02 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural and Molecular Basis of Znrf3/Rnf43 Transmembrane Ubiquitin Ligase Inhibition by the Wnt Agonist R-Spondin. Nat.Commun., 4, 2013
4NKG	Crystal structure of SspH1 LRR domain in complex PKN1 HR1b domain Descriptor: E3 ubiquitin-protein ligase sspH1, HEXANE-1,6-DIOL, Serine/threonine-protein kinase N1 Authors: Keszei, A.F.A, Xiaojing, T, Mccormick, C, Zeqiraj, E, Rohde, J.R, Tyers, M, Sicheri, F. Deposit date: 2013-11-12 Release date: 2013-12-11 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structure of an SspH1-PKN1 Complex Reveals the Basis for Host Substrate Recognition and Mechanism of Activation for a Bacterial E3 Ubiquitin Ligase. Mol.Cell.Biol., 34, 2014
1VWC	STREPTAVIDIN-CYCLO-AC-[CHPQFC]-NH2, PH 2.0 Descriptor: PEPTIDE LIGAND CONTAINING HPQ, STREPTAVIDIN Authors: Katz, B.A, Cass, R.T. Deposit date: 1997-03-03 Release date: 1998-03-18 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.86 Å) Cite: In crystals of complexes of streptavidin with peptide ligands containing the HPQ sequence the pKa of the peptide histidine is less than 3.0. J.Biol.Chem., 272, 1997
4BE8	NEDD4 HECT A889F structure Descriptor: E3 UBIQUITIN-PROTEIN LIGASE NEDD4 Authors: Maspero, E, Valentini, E, Mari, S, Cecatiello, V, Polo, S, Pasqualato, S. Deposit date: 2013-03-06 Release date: 2013-05-01 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.996 Å) Cite: Structure of a Ubiquitin-Loaded Hect Ligase Reveals the Molecular Basis for Catalytic Priming Nat.Struct.Mol.Biol., 20, 2013
6XAR	Structure of CBL tyrosine kinase binding domain (TKBD) with C-terminal tail of Src-like kinase protein 2 (SLAP2) Descriptor: CALCIUM ION, E3 ubiquitin-protein ligase CBL, Src-like-adapter 2 Authors: Wybenga-Groot, L.E, McGlade, C.J. Deposit date: 2020-06-04 Release date: 2021-03-03 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.501 Å) Cite: SLAP2 Adaptor Binding Disrupts c-CBL Autoinhibition to Activate Ubiquitin Ligase Function. J.Mol.Biol., 433, 2021
5J9C	Crystal structure of peroxiredoxin Asp f3 C31S/C61S variant Descriptor: MAGNESIUM ION, peroxiredoxin Asp f3 Authors: Bzymek, K.P, Williams, J.C, Hong, T.B, Bagramyan, K, Kalkum, M. Deposit date: 2016-04-08 Release date: 2016-09-21 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.956 Å) Cite: The Crystal Structure of Peroxiredoxin Asp f3 Provides Mechanistic Insight into Oxidative Stress Resistance and Virulence of Aspergillus fumigatus. Sci Rep, 6, 2016
5FCE	The crystal structure of the ligand binding region of Serine-glutamate repeat protein A (SgrA) of Enterococcus faecium Descriptor: LPXTG family cell surface protein Fms2 Authors: Ponnuraj, K, Nagarajan, R. Deposit date: 2015-12-15 Release date: 2016-07-06 Last modified: 2017-12-06 Method: X-RAY DIFFRACTION (1.798 Å) Cite: The crystal structure of the ligand-binding region of serine-glutamate repeat containing protein A (SgrA) of Enterococcus faecium reveals a new protein fold: functional characterization and insights into its adhesion function. FEBS J., 283, 2016
1VWF	STREPTAVIDIN COMPLEXED WITH CYCLO-AC-[CHPQGPPC]-NH2 MONOMER, PH 3.67 Descriptor: PEPTIDE LIGAND CONTAINING HPQ, STREPTAVIDIN Authors: Katz, B.A, Cass, R.T. Deposit date: 1997-03-03 Release date: 1998-03-18 Last modified: 2024-06-05 Method: X-RAY DIFFRACTION (1.92 Å) Cite: In crystals of complexes of streptavidin with peptide ligands containing the HPQ sequence the pKa of the peptide histidine is less than 3.0. J.Biol.Chem., 272, 1997
1VWD	STREPTAVIDIN-CYCLO-AC-[CHPQFC]-NH2, PH 3.0 Descriptor: PEPTIDE LIGAND CONTAINING HPQ, STREPTAVIDIN Authors: Katz, B.A, Cass, R.T. Deposit date: 1997-03-03 Release date: 1998-03-18 Last modified: 2011-11-16 Method: X-RAY DIFFRACTION (1.87 Å) Cite: In crystals of complexes of streptavidin with peptide ligands containing the HPQ sequence the pKa of the peptide histidine is less than 3.0. J.Biol.Chem., 272, 1997
1OLZ	The ligand-binding face of the semaphorins revealed by the high resolution crystal structure of SEMA4D Descriptor: SEMAPHORIN 4D Authors: Love, C.A, Harlos, K, Mavaddat, N, Davis, S.J, Stuart, D.I, Jones, E.Y, Esnouf, R.M. Deposit date: 2003-08-19 Release date: 2003-09-11 Last modified: 2018-02-28 Method: X-RAY DIFFRACTION (2 Å) Cite: The Ligand-Binding Face of the Semaphorins Revealed by the High-Resolution Crystal Structure of Sema4D Nat.Struct.Biol., 10, 2003

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