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7MWD
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BU of 7mwd by Molmil
HUWE1 in map with focus on HECT
Descriptor: E3 ubiquitin-protein ligase HUWE1
Authors:Hunkeler, M, Fischer, E.S.
Deposit date:2021-05-16
Release date:2021-07-28
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Solenoid architecture of HUWE1 contributes to ligase activity and substrate recognition.
Mol.Cell, 81, 2021
7MWF
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BU of 7mwf by Molmil
HUWE1 in map with focus on interface
Descriptor: E3 ubiquitin-protein ligase HUWE1
Authors:Hunkeler, M, Fischer, E.S.
Deposit date:2021-05-16
Release date:2021-07-28
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Solenoid architecture of HUWE1 contributes to ligase activity and substrate recognition.
Mol.Cell, 81, 2021
7MWE
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BU of 7mwe by Molmil
HUWE1 in map with focus on WWE
Descriptor: E3 ubiquitin-protein ligase HUWE1
Authors:Hunkeler, M, Fischer, E.S.
Deposit date:2021-05-16
Release date:2021-07-28
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Solenoid architecture of HUWE1 contributes to ligase activity and substrate recognition.
Mol.Cell, 81, 2021
2AKY
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BU of 2aky by Molmil
HIGH-RESOLUTION STRUCTURES OF ADENYLATE KINASE FROM YEAST LIGATED WITH INHIBITOR AP5A, SHOWING THE PATHWAY OF PHOSPHORYL TRANSFER
Descriptor: ADENYLATE KINASE, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION
Authors:Abele, U, Schulz, G.E.
Deposit date:1995-07-28
Release date:1995-11-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:High-resolution structures of adenylate kinase from yeast ligated with inhibitor Ap5A, showing the pathway of phosphoryl transfer.
Protein Sci., 4, 1995
3KNF
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BU of 3knf by Molmil
Crystal structure of D-Tyr-tRNA(Tyr) deacylase from Plasmodium falciparum
Descriptor: D-tyrosyl-tRNA(Tyr) deacylase
Authors:Manickam, Y, Bhatt, T.K, Sharma, A.
Deposit date:2009-11-12
Release date:2009-12-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3 Å)
Cite:Ligand-bound Structures Provide Atomic Snapshots for the Catalytic Mechanism of D-Amino Acid Deacylase
J.Biol.Chem., 285, 2010
8IUM
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BU of 8ium by Molmil
Cryo-EM structure of the tafluprost acid-bound human PTGFR-Gq complex
Descriptor: (~{Z})-7-[(1~{R},2~{R},3~{R},5~{S})-2-[(~{E})-3,3-bis(fluoranyl)-4-phenoxy-but-1-enyl]-3,5-bis(oxidanyl)cyclopentyl]hept-5-enoic acid, Antibody fragment scFv16, G subunit alpha (q), ...
Authors:Wu, C, Xu, Y, Xu, H.E.
Deposit date:2023-03-24
Release date:2023-07-12
Method:ELECTRON MICROSCOPY (3.14 Å)
Cite:Ligand-induced activation and G protein coupling of prostaglandin F 2 alpha receptor.
Nat Commun, 14, 2023
8IUK
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BU of 8iuk by Molmil
Cryo-EM structure of the PGF2-alpha-bound human PTGFR-Gq complex
Descriptor: (Z)-7-[(1R,2R,3R,5S)-3,5-bis(oxidanyl)-2-[(E,3S)-3-oxidanyloct-1-enyl]cyclopentyl]hept-5-enoic acid, Antibody fragment scFv16, G subunit alpha (q), ...
Authors:Wu, C, Xu, Y, Xu, H.E.
Deposit date:2023-03-24
Release date:2023-07-12
Last modified:2023-11-08
Method:ELECTRON MICROSCOPY (2.67 Å)
Cite:Ligand-induced activation and G protein coupling of prostaglandin F 2 alpha receptor.
Nat Commun, 14, 2023
8IUL
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BU of 8iul by Molmil
Cryo-EM structure of the latanoprost-bound human PTGFR-Gq complex
Descriptor: Antibody fragment scFv16, G subunit alpha (q), Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Wu, C, Xu, Y, Xu, H.E.
Deposit date:2023-03-24
Release date:2023-07-12
Last modified:2023-08-30
Method:ELECTRON MICROSCOPY (2.78 Å)
Cite:Ligand-induced activation and G protein coupling of prostaglandin F 2 alpha receptor.
Nat Commun, 14, 2023
6MKZ
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BU of 6mkz by Molmil
Crystal structure of murine 4-1BB/4-1BBL complex
Descriptor: Tumor necrosis factor ligand superfamily member 9, Tumor necrosis factor receptor superfamily member 9, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Bitra, A, Zajonc, D.M, Doukov, T.
Deposit date:2018-09-26
Release date:2018-12-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Crystal structure of the m4-1BB/4-1BBL complex reveals an unusual dimeric ligand that undergoes structural changes upon 4-1BB receptor binding.
J. Biol. Chem., 294, 2019
2FCW
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BU of 2fcw by Molmil
Structure of a Complex Between the Pair of the LDL Receptor Ligand-Binding Modules 3-4 and the Receptor Associated Protein (RAP).
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Alpha-2-macroglobulin receptor-associated protein, CALCIUM ION, ...
Authors:Beglova, N, Fisher, C, Blacklow, S.C.
Deposit date:2005-12-12
Release date:2006-05-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Structure of an LDLR-RAP Complex Reveals a General Mode for Ligand Recognition by Lipoprotein Receptors
Mol.Cell, 22, 2006
2KIZ
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BU of 2kiz by Molmil
Solution structure of Arkadia RING-H2 finger domain
Descriptor: E3 ubiquitin-protein ligase Arkadia, ZINC ION
Authors:Kandias, N.G, Chasapis, C.T, Bentrop, D, Episkopou, V, Spyroulias, G.A.
Deposit date:2009-05-13
Release date:2010-05-19
Last modified:2013-03-20
Method:SOLUTION NMR
Cite:NMR-based insights into the conformational and interaction properties of Arkadia RING-H2 E3 Ub ligase.
Proteins, 80, 2012
3KO9
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BU of 3ko9 by Molmil
DTD from Plasmodium falciparum in complex with D-Arginine
Descriptor: D-ARGININE, D-tyrosyl-tRNA(Tyr) deacylase
Authors:Manickam, Y, Bhatt, T.K, Sharma, A.
Deposit date:2009-11-13
Release date:2009-12-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Ligand-bound Structures Provide Atomic Snapshots for the Catalytic Mechanism of D-Amino Acid Deacylase
J.Biol.Chem., 285, 2010
1IIW
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BU of 1iiw by Molmil
GLUR0 LIGAND BINDING CORE: CLOSED-CLEFT LIGAND-FREE STRUCTURE
Descriptor: Slr1257 protein
Authors:Mayer, M.L, Olson, R, Gouaux, E.
Deposit date:2001-04-24
Release date:2001-09-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Mechanisms for ligand binding to GluR0 ion channels: crystal structures of the glutamate and serine complexes and a closed apo state.
J.Mol.Biol., 311, 2001
1T8A
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BU of 1t8a by Molmil
USE OF SEQUENCE DUPLICATION TO ENGINEER A LIGAND-TRIGGERED LONG-DISTANCE MOLECULAR SWITCH IN T4 Lysozyme
Descriptor: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, GUANIDINE, ...
Authors:Yousef, M.S, Baase, W.A, Matthews, B.W.
Deposit date:2004-05-11
Release date:2004-08-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Use of sequence duplication to engineer a ligand-triggered, long-distance molecular switch in T4 lysozyme.
Proc.Natl.Acad.Sci.USA, 101, 2004
3NM4
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BU of 3nm4 by Molmil
Helicobacter pylori MTAN
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MTA/SAH nucleosidase
Authors:Ronning, D.R, Iacopelli, N.M.
Deposit date:2010-06-21
Release date:2010-11-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Enzyme-ligand interactions that drive active site rearrangements in the Helicobacter pylori 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase.
Protein Sci., 19, 2010
8W4E
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BU of 8w4e by Molmil
Crystal structure of the sigma-1 receptor from Xenopus laevis in the absence of known ligands (C2 form)
Descriptor: Sigma non-opioid intracellular receptor 1
Authors:Xiao, Y, Fu, C, Sun, Z, Zhou, X.
Deposit date:2023-08-23
Release date:2024-07-17
Method:X-RAY DIFFRACTION (2.805 Å)
Cite:Insight into binding of endogenous neurosteroid ligands to the sigma-1 receptor.
Nat Commun, 15, 2024
8W4D
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BU of 8w4d by Molmil
Crystal structure of the sigma-1 receptor from Xenopus laevis in the absence of known ligands
Descriptor: Sigma non-opioid intracellular receptor 1
Authors:Xiao, Y, Fu, C, Sun, Z, Zhou, X.
Deposit date:2023-08-23
Release date:2024-07-17
Method:X-RAY DIFFRACTION (2.173 Å)
Cite:Insight into binding of endogenous neurosteroid ligands to the sigma-1 receptor.
Nat Commun, 15, 2024
8WQR
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BU of 8wqr by Molmil
Structure of the DDB1-AMBRA1 E3 ligase receptor complex linked to cell cycle regulation
Descriptor: Activating molecule in BECN1-regulated autophagy protein 1, DNA damage-binding protein 1
Authors:Liu, M, Wang, Y, Su, M.Y, Stjepanovic, G.
Deposit date:2023-10-12
Release date:2023-12-20
Method:ELECTRON MICROSCOPY (3.08 Å)
Cite:Structure of the DDB1-AMBRA1 E3 ligase receptor complex linked to cell cycle regulation.
Nat Commun, 14, 2023
6IDY
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BU of 6idy by Molmil
Crystal structure of Aspergillus fumigatus lipase B
Descriptor: CALCIUM ION, SULFATE ION, lipase aflb
Authors:Wang, Y.H, Lan, D.M.
Deposit date:2018-09-12
Release date:2019-09-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of Aspergillus fumigatus lipase B
To Be Published
5HEH
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BU of 5heh by Molmil
Pentameric ligand-gated ion channel GLIC mutant P246A
Descriptor: Proton-gated ion channel
Authors:Bertozzi, C, Dutzler, R.
Deposit date:2016-01-06
Release date:2016-03-02
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Signal Transduction at the Domain Interface of Prokaryotic Pentameric Ligand-Gated Ion Channels.
Plos Biol., 14, 2016
2WY3
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BU of 2wy3 by Molmil
Structure of the HCMV UL16-MICB complex elucidates select binding of a viral immunoevasin to diverse NKG2D ligands
Descriptor: 2,5,8,11,14,17,20,23,26,29,32,35,38,41,44,47,50,53,56,59,62,65,68,71,74,77,80-HEPTACOSAOXADOOCTACONTAN-82-OL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, ...
Authors:Mueller, S, Zocher, G, Steinle, A, Stehle, T.
Deposit date:2009-11-11
Release date:2010-02-02
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of the Hcmv Ul16-Micb Complex Elucidates Select Binding of a Viral Immunoevasin to Diverse Nkg2D Ligands.
Plos Pathog., 6, 2010
7T92
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BU of 7t92 by Molmil
Structure of the peroxisomal retro-translocon formed by a heterotrimeric ubiquitin ligase complex
Descriptor: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, CHOLESTEROL, Fab heavy chain, ...
Authors:Peiqiang, F, Tom, R.
Deposit date:2021-12-17
Release date:2022-07-06
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:A peroxisomal ubiquitin ligase complex forms a retrotranslocation channel.
Nature, 607, 2022
6DO3
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BU of 6do3 by Molmil
KLHDC2 ubiquitin ligase in complex with SelK C-end degron
Descriptor: Kelch domain-containing protein 2, SelK C-end Degron
Authors:Rusnac, D.V, Lin, H.C, Yen, H.C.S, Zheng, N.
Deposit date:2018-06-08
Release date:2018-12-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.165 Å)
Cite:Recognition of the Diglycine C-End Degron by CRL2KLHDC2Ubiquitin Ligase.
Mol. Cell, 72, 2018
3BOV
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BU of 3bov by Molmil
Crystal structure of the receptor binding domain of mouse PD-L2
Descriptor: FORMIC ACID, Programmed cell death 1 ligand 2, SODIUM ION
Authors:Lazar-Molnar, E, Ramagopal, U, Cao, E, Toro, R, Nathenson, S.G, Almo, S.C.
Deposit date:2007-12-17
Release date:2008-07-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Crystal structure of the complex between programmed death-1 (PD-1) and its ligand PD-L2.
Proc.Natl.Acad.Sci.USA, 105, 2008
6DO5
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BU of 6do5 by Molmil
KLHDC2 ubiquitin ligase in complex with USP1 C-end degron
Descriptor: Kelch domain-containing protein 2, USP1 C-END DEGRON
Authors:Rusnac, D.V, Lin, H.C, Yen, H.C.S, Zheng, N.
Deposit date:2018-06-08
Release date:2018-12-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Recognition of the Diglycine C-End Degron by CRL2KLHDC2Ubiquitin Ligase.
Mol. Cell, 72, 2018

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