PDB: 160 件ウェブページステータス検索Chemie searchBIRD

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8PQL	K48-linked ubiquitin chain formation with a cullin-RING E3 ligase and Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2-donor UB-acceptor UB-SIL1 peptide 分子名称: 5-azanylpentan-2-one, Cullin-2, E3 ubiquitin-protein ligase RBX1, ... 著者 Liwocha, J, Prabu, J.R, Kleiger, G, Schulman, B.A. 登録日 2023-07-11 公開日 2024-02-14 最終更新日 2024-04-17 実験手法 ELECTRON MICROSCOPY (3.76 Å) 主引用文献 Mechanism of millisecond Lys48-linked poly-ubiquitin chain formation by cullin-RING ligases. Nat.Struct.Mol.Biol., 31, 2024
8Q7R	Ubiquitin ligation to substrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB-Sil1 peptide 分子名称: 5-azanyl-1-oxidanyl-pentan-2-one, Cullin-2, E3 ubiquitin-protein ligase RBX1, ... 著者 Liwocha, J, Prabu, J.R, Kleiger, G, Schulman, B.A. 登録日 2023-08-16 公開日 2024-02-21 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.71 Å) 主引用文献 Cullin-RING ligases employ geometrically optimized catalytic partners for substrate targeting. Mol.Cell, 84, 2024
8R5H	Ubiquitin ligation to neosubstrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-VHL-MZ1 with trapped UBE2R2~donor UB-BRD4 BD2 分子名称: (2~{S},4~{R})-1-[(2~{S})-2-[2-[2-[2-[2-[2-[(9~{S})-7-(4-chlorophenyl)-4,5,13-trimethyl-3-thia-1,8,11,12-tetrazatricyclo[8.3.0.0^{2,6}]trideca-2(6),4,7,10,12-pentaen-9-yl]ethanoylamino]ethoxy]ethoxy]ethoxy]ethanoylamino]-3,3-dimethyl-butanoyl]-~{N}-[[4-(4-methyl-2,3-dihydro-1,3-thiazol-5-yl)phenyl]methyl]-4-oxidanyl-pyrrolidine-2-carboxamide, 5-azanylpentan-2-one, Bromodomain-containing protein 4, ... 著者 Liwocha, J, Prabu, J.R, Kleiger, G, Schulman, B.A. 登録日 2023-11-16 公開日 2024-02-21 最終更新日 2024-04-17 実験手法 ELECTRON MICROSCOPY (3.44 Å) 主引用文献 Cullin-RING ligases employ geometrically optimized catalytic partners for substrate targeting. Mol.Cell, 84, 2024
8Q5M	N-terminal domain of restriction endonuclease Eco15I in the absence of DNA. 分子名称: Restriction endonuclease (Eco15I) 著者 Rafalski, D, Krakowska, K, Bochtler, M. 登録日 2023-08-09 公開日 2024-07-17 実験手法 X-RAY DIFFRACTION (2.66 Å) 主引用文献 Structural analysis of the BisI family of modification dependent restriction endonucleases. To Be Published
3WOC	Crystal structure of a prostate-specific WGA16 glycoprotein lectin, form II 分子名称: 1,4-DIETHYLENE DIOXIDE, GLYCEROL, SULFATE ION, ... 著者 Garenaux, E, Kanagawa, M, Tsuchiyama, T, Hori, K, Kanazawa, T, Goshima, A, Chiba, M, Yasue, H, Ikeda, A, Yamaguchi, Y, Sato, C, Kitajima, K. 登録日 2013-12-26 公開日 2014-12-31 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Discovery, Primary, and Crystal Structures and Capacitation-related Properties of a Prostate-derived Heparin-binding Protein WGA16 from Boar Sperm J.Biol.Chem., 290, 2015
7WOC	Locally refined region of SARS-CoV-2 Spike in complex with IgG 553-60 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, mAb60 VH, ... 著者 Zhan, W.Q, Zhang, X, Chen, Z.G, Sun, L. 登録日 2022-01-21 公開日 2022-07-20 最終更新日 2022-09-14 実験手法 ELECTRON MICROSCOPY (3.35 Å) 主引用文献 Structural Study of SARS-CoV-2 Antibodies Identifies a Broad-Spectrum Antibody That Neutralizes the Omicron Variant by Disassembling the Spike Trimer. J.Virol., 96, 2022
2WOC	Crystal Structure of the dinitrogenase reductase-activating glycohydrolase (DRAG) from Rhodospirillum rubrum 分子名称: ADP-RIBOSYL-[DINITROGEN REDUCTASE] GLYCOHYDROLASE, CHLORIDE ION, FORMIC ACID, ... 著者 Berthold, C.L, Wang, H, Nordlund, S, Hogbom, M. 登録日 2009-07-23 公開日 2009-08-11 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Mechanism of Adp-Ribosylation Removal Revealed by the Structure and Ligand Complexes of the Dimanganese Mono-Adp-Ribosylhydrolase Drag. Proc.Natl.Acad.Sci.USA, 106, 2009
1WOC	Crystal structure of PriB 分子名称: Primosomal replication protein n 著者 Shioi, S, Ose, T, Maenaka, K, Abe, Y, Kohda, D, Katayama, T, Ueda, T. 登録日 2004-08-13 公開日 2005-01-25 最終更新日 2012-12-05 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of a biologically functional form of PriB from Escherichia coli reveals a potential single-stranded DNA-binding site Biochem.Biophys.Res.Commun., 326, 2005
5WOC	De Novo Design of Covalently Constrained Meso-size Protein Scaffolds with Unique Tertiary Structures 分子名称: (3-methylphenyl)methanol, SER-PRO-GLU-GLU-ARG-ALA-GLN-LEU-CYS-THR-ALA-ALA-GLU-LYS-ALA-ASP-GLU-LEU-GLY 著者 Wu, H, Wu, Y, DeGrado, W.F. 登録日 2017-08-01 公開日 2017-10-04 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 De novo design of covalently constrained mesosize protein scaffolds with unique tertiary structures. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6WOC	Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with 5-diphosphoinositol pentakisphosphate and Mg, presoaked with 5-IP7, Mg and Fluoride, soaking 1min in the absence of Fluoride. 分子名称: (1r,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate, CHLORIDE ION, Diphosphoinositol polyphosphate phosphohydrolase 1, ... 著者 Zong, G.N, Wang, H.C, Shears, S.B. 登録日 2020-04-24 公開日 2021-03-03 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 New structural insights reveal an expanded reaction cycle for inositol pyrophosphate hydrolysis by human DIPP1. Faseb J., 35, 2021
4WOC	Proteinase-K Post-Surface Acoustic Waves 分子名称: Proteinase K, SULFATE ION 著者 French, J.B. 登録日 2014-10-15 公開日 2015-02-18 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.601 Å) 主引用文献 Precise Manipulation and Patterning of Protein Crystals for Macromolecular Crystallography Using Surface Acoustic Waves. Small, 11, 2015
8FBO	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains 分子名称: KWOCA_102 著者 Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P. 登録日 2022-11-29 公開日 2023-03-22 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023
8FBJ	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains 分子名称: KWOCA_60 著者 Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P. 登録日 2022-11-29 公開日 2023-03-22 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (3.25 Å) 主引用文献 Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023
8FBN	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains 分子名称: KWOCA_73 著者 Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P. 登録日 2022-11-29 公開日 2023-03-22 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (3.04 Å) 主引用文献 Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023
8FBI	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains 分子名称: KWOCA_39 著者 Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P. 登録日 2022-11-29 公開日 2023-03-22 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (3.61 Å) 主引用文献 Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023
8FBK	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains 分子名称: KWOCA_65 著者 Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P. 登録日 2022-11-29 公開日 2023-03-22 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (3.15 Å) 主引用文献 Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023
3WOB	Crystal structure of a prostate-specific WGA16 glycoprotein lectin, form I 分子名称: hypothetical protein 著者 Garenaux, E, Kanagawa, M, Tsuchiyama, T, Hori, K, Kanazawa, T, Goshima, A, Chiba, M, Yasue, H, Ikeda, A, Yamaguchi, Y, Sato, C, Kitajima, K. 登録日 2013-12-26 公開日 2014-12-31 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Discovery, Primary, and Crystal Structures and Capacitation-related Properties of a Prostate-derived Heparin-binding Protein WGA16 from Boar Sperm J.Biol.Chem., 290, 2015
2WOD	Crystal Structure of the dinitrogenase reductase-activating glycohydrolase (DRAG) from Rhodospirillum rubrum in complex with ADP- ribsoyllysine 分子名称: ADP-RIBOSYL-[DINITROGEN REDUCTASE] GLYCOHYDROLASE, CHLORIDE ION, GLYCEROL, ... 著者 Berthold, C.L, Wang, H, Nordlund, S, Hogbom, M. 登録日 2009-07-23 公開日 2009-08-11 最終更新日 2018-01-17 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Mechanism of Adp-Ribosylation Removal Revealed by the Structure and Ligand Complexes of the Dimanganese Mono-Adp-Ribosylhydrolase Drag. Proc.Natl.Acad.Sci.USA, 106, 2009
2WOE	Crystal Structure of the D97N variant of dinitrogenase reductase- activating glycohydrolase (DRAG) from Rhodospirillum rubrum in complex with ADP-ribose 分子名称: ADP-RIBOSYL-[DINITROGEN REDUCTASE] GLYCOHYDROLASE, GLYCEROL, L(+)-TARTARIC ACID, ... 著者 Berthold, C.L, Wang, H, Nordlund, S, Hogbom, M. 登録日 2009-07-23 公開日 2009-08-18 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Mechanism of Adp-Ribosylation Removal Revealed by the Structure and Ligand Complexes of the Dimanganese Mono-Adp-Ribosylhydrolase Drag. Proc.Natl.Acad.Sci.USA, 106, 2009
4UU8	Crystal structure of zebrafish Sirtuin 5 in complex with 3,3-dimethyl- succinylated CPS1-peptide 分子名称: 1,2-ETHANEDIOL, 2,2-dimethylbutanedioic acid, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ... 著者 Pannek, M, Gertz, M, Steegborn, C. 登録日 2014-07-24 公開日 2014-08-20 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Chemical Probing of the Human Sirtuin 5 Active Site Reveals its Substrate Acyl Specificity and Peptide-Based Inhibitors. Angew.Chem.Int.Ed.Engl., 53, 2014
4WO9	Lysozyme Post-Surface Acoustic Waves 分子名称: Lysozyme C, SODIUM ION 著者 French, J.B. 登録日 2014-10-15 公開日 2015-02-18 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.99 Å) 主引用文献 Precise Manipulation and Patterning of Protein Crystals for Macromolecular Crystallography Using Surface Acoustic Waves. Small, 11, 2015
4WOB	Proteinase-K Pre-Surface Acoustic Wave 分子名称: Proteinase K, SULFATE ION 著者 French, J.B. 登録日 2014-10-15 公開日 2015-02-18 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Precise Manipulation and Patterning of Protein Crystals for Macromolecular Crystallography Using Surface Acoustic Waves. Small, 11, 2015
4WO6	Lysozyme Pre-surface acoustic wave 分子名称: Lysozyme C, SODIUM ION 著者 French, J.B. 登録日 2014-10-15 公開日 2015-02-18 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.001 Å) 主引用文献 Precise Manipulation and Patterning of Protein Crystals for Macromolecular Crystallography Using Surface Acoustic Waves. Small, 11, 2015
4WOA	Lysozyme Multiple Crystals After Surface Acoustic Wave Alignment 分子名称: Lysozyme C, SODIUM ION 著者 French, J.B. 登録日 2014-10-15 公開日 2015-02-18 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Precise Manipulation and Patterning of Protein Crystals for Macromolecular Crystallography Using Surface Acoustic Waves. Small, 11, 2015
6UCQ	Crystal structure of the Thermus thermophilus 70S ribosome recycling complex 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Zhou, D, Tanzawa, T, Gagnon, M.G, Lin, J. 登録日 2019-09-17 公開日 2019-12-25 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Structural basis for ribosome recycling by RRF and tRNA. Nat.Struct.Mol.Biol., 27, 2020

 

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