PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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6RYL	WUS-HD bound to TAAT DNA 分子名称: DNA (5'-D(P*CP*AP*CP*AP*AP*CP*CP*CP*AP*TP*TP*AP*AP*CP*AP*C)-3'), DNA (5'-D(P*GP*TP*GP*TP*TP*AP*AP*TP*GP*GP*GP*TP*TP*GP*TP*G)-3'), Protein WUSCHEL 著者 Sloan, J.J, Wild, K, Sinning, I. 登録日 2019-06-10 公開日 2020-04-29 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.63 Å) 主引用文献 Structural basis for the complex DNA binding behavior of the plant stem cell regulator WUSCHEL. Nat Commun, 11, 2020
5DQG	Crystal Structure of Human DNA Polymerase Eta Inserting dAMPNPP Opposite O4-Ethylthymidine 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*(5EJ)P*AP*TP*GP*AP*CP*GP*CP*T)-3'), ... 著者 Patra, A, OFlaherty, D.K, Egli, M. 登録日 2015-09-14 公開日 2016-08-10 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.29 Å) 主引用文献 Lesion Orientation ofO4-Alkylthymidine Influences Replication by Human DNA Polymeraseeta. Chem Sci, 7, 2016
5DQH	Crystal Structure of Human DNA Polymerase Eta Inserting dGMPNPP Opposite O4-Ethylthymidine 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*(5EJ)P*AP*TP*GP*AP*CP*GP*CP*T)-3'), ... 著者 Patra, A, OFlaherty, D.K, Egli, M. 登録日 2015-09-14 公開日 2016-08-10 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.99 Å) 主引用文献 Lesion Orientation ofO4-Alkylthymidine Influences Replication by Human DNA Polymeraseeta. Chem Sci, 7, 2016
7Y00	Cryo-EM structure of the nucleosome containing 169 base-pair DNA with a p53 target sequence 分子名称: DNA (169-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Nishimura, M, Nozawa, K, Takizawa, Y, Kurumizaka, H. 登録日 2022-06-03 公開日 2022-10-19 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (3.96 Å) 主引用文献 Structural basis for p53 binding to its nucleosomal target DNA sequence. Pnas Nexus, 1, 2022
7XZY	Cryo-EM structure of the nucleosome containing 193 base-pair DNA with a p53 target sequence 分子名称: DNA (193-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Nishimura, M, Nozawa, K, Takizawa, Y, Kurumizaka, H. 登録日 2022-06-03 公開日 2022-10-19 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (3.97 Å) 主引用文献 Structural basis for p53 binding to its nucleosomal target DNA sequence. Pnas Nexus, 1, 2022
2RBA	Structure of Human Thymine DNA Glycosylase Bound to Abasic and Undamaged DNA 分子名称: DNA (5'-D(*DCP*DAP*DGP*DCP*DTP*DCP*DTP*DGP*DTP*DAP*DCP*DGP*DTP*DGP*DAP*DGP*DCP*DAP*DGP*DTP*DGP*DGP*DA)-3'), DNA (5'-D(*DCP*DCP*DAP*DCP*DTP*DGP*DCP*DTP*DCP*DAP*(3DR)P*DGP*DTP*DAP*DCP*DAP*DGP*DAP*DGP*DCP*DTP*DGP*DT)-3'), G/T mismatch-specific thymine DNA glycosylase 著者 Maiti, A, Pozharski, E, Drohat, A.C. 登録日 2007-09-18 公開日 2008-06-17 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.79 Å) 主引用文献 Crystal structure of human thymine DNA glycosylase bound to DNA elucidates sequence-specific mismatch recognition. Proc.Natl.Acad.Sci.Usa, 105, 2008
5DLF	Crystal Structure of Human DNA Polymerase Eta Inserting dATP Opposite O4-Methylhymidine 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ... 著者 Patra, A, OFlaherty, D.K, Egli, M. 登録日 2015-09-04 公開日 2016-08-10 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.97 Å) 主引用文献 Lesion Orientation ofO4-Alkylthymidine Influences Replication by Human DNA Polymeraseeta. Chem Sci, 7, 2016
7R6R	Crystal Structure of a Mycobacteriophage Cluster A2 Immunity Repressor:DNA Complex 分子名称: DNA (5'-D(P*CP*CP*CP*GP*CP*TP*TP*GP*AP*CP*AP*GP*CP*CP*AP*CP*CP*GP*AP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*CP*GP*GP*TP*GP*GP*CP*TP*GP*TP*CP*AP*AP*GP*CP*GP*GP*G)-3'), Immunity repressor 著者 McGinnis, R.J, Brambley, C.A, Stamey, B, Green, W.C, Gragg, K.N, Cafferty, E.R, Terwilliger, T.C, Hammel, M, Hollis, T.J, Miller, J.M, Gainey, M.D, Wallen, J.R. 登録日 2021-06-23 公開日 2022-07-20 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.13 Å) 主引用文献 A monomeric mycobacteriophage immunity repressor utilizes two domains to recognize an asymmetric DNA sequence. Nat Commun, 13, 2022
5DLG	Crystal Structure of Human DNA Polymerase Eta Inserting dGMPNPP Opposite O4-Methylhymidine 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*(5DB)P*AP*TP*GP*AP*CP*GP*CP*T)-3'), ... 著者 Patra, A, OFlaherty, D.K, Egli, M. 登録日 2015-09-04 公開日 2016-08-10 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.351 Å) 主引用文献 Lesion Orientation ofO4-Alkylthymidine Influences Replication by Human DNA Polymeraseeta. Chem Sci, 7, 2016
4EA4	Structure of the glycosylase domain of MBD4 bound to 5hmU-containing DNA 分子名称: DNA (5'-D(*CP*CP*AP*GP*CP*GP*(5HU)P*GP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*CP*GP*CP*GP*CP*TP*GP*G)-3'), Methyl-CpG-binding domain protein 4 著者 Morera, S, Vigouroux, A. 登録日 2012-03-22 公開日 2012-08-08 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Biochemical and structural characterization of the glycosylase domain of MBD4 bound to thymine and 5-hydroxymethyuracil-containing DNA. Nucleic Acids Res., 40, 2012
5DQI	Crystal Structure of Human DNA Polymerase Eta Extending an O4-Ethylthymidine : dA Pair By Inserting dCTP Opposite dG 分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*AP*C)-3'), ... 著者 Patra, A, OFlaherty, D.K, Egli, M. 登録日 2015-09-14 公開日 2016-08-10 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Lesion Orientation ofO4-Alkylthymidine Influences Replication by Human DNA Polymeraseeta. Chem Sci, 7, 2016
4E9G	structure of the glycosylase domain of MBD4 bound to thymine containing DNA 分子名称: DNA (5'-D(*CP*CP*AP*GP*CP*GP*TP*GP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*CP*GP*CP*GP*CP*TP*GP*G)-3'), Methyl-CpG-binding domain protein 4 著者 Morera, S, Vigouroux, A. 登録日 2012-03-21 公開日 2012-08-08 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Biochemical and structural characterization of the glycosylase domain of MBD4 bound to thymine and 5-hydroxymethyuracil-containing DNA. Nucleic Acids Res., 40, 2012
2EX3	Bacteriophage phi29 DNA polymerase bound to terminal protein 分子名称: DNA polymerase, DNA terminal protein, LEAD (II) ION 著者 Kamtekar, S, Berman, A.J, Wang, J, de Vega, M, Blanco, L, Salas, M, Steitz, T.A. 登録日 2005-11-07 公開日 2006-03-14 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 The phi29 DNA polymerase:protein-primer structure suggests a model for the initiation to elongation transition Embo J., 25, 2006
7MCS	Cryo-electron microscopy structure of TnsC(1-503)A225V bound to DNA 分子名称: DNA (5'-D(P*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*G)-3'), MAGNESIUM ION, ... 著者 Shen, Y, Ortega, J, Guarne, A. 登録日 2021-04-02 公開日 2022-02-23 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.56 Å) 主引用文献 Structural basis for DNA targeting by the Tn7 transposon. Nat.Struct.Mol.Biol., 29, 2022
2GWS	Crystal Structure of human DNA Polymerase lambda with a G/G mismatch in the primer terminus 分子名称: 1,2-ETHANEDIOL, 5'-D(*CP*GP*GP*CP*AP*GP*CP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*GP*G)-3', ... 著者 Garcia-Diaz, M, Picher, A.J, Bebenek, K, Pedersen, L.C, Kunkel, T.A, Blanco, L. 登録日 2006-05-05 公開日 2006-09-05 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Promiscuous mismatch extension by human DNA polymerase lambda. Nucleic Acids Res., 34, 2006
4EA5	Structure of the glycoslyase domain of MBD4 bound to a 5hmU containing DNA 分子名称: DNA (5'-D(*CP*CP*AP*GP*CP*GP*(5HU)*GP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*CP*GP*CP*GP*CP*TP*GP*G)-3'), Methyl-CpG-binding domain protein 4 著者 Morera, S, Vigouroux, A. 登録日 2012-03-22 公開日 2012-08-08 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.14 Å) 主引用文献 Biochemical and structural characterization of the glycosylase domain of MBD4 bound to thymine and 5-hydroxymethyuracil-containing DNA. Nucleic Acids Res., 40, 2012
3F2C	DNA Polymerase PolC from Geobacillus kaustophilus complex with DNA, dGTP and Mn 分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*DAP*DTP*DAP*DAP*DCP*DGP*DGP*DTP*DTP*DGP*DCP*DCP*DCP*DGP*DTP*DCP*DTP*DCP*DAP*DCP*DTP*DG)-3', 5'-D(*DCP*DAP*DGP*DTP*DGP*DAP*DGP*DAP*DCP*DGP*DGP*DGP*DCP*DAP*DAP*DCP*DC)-3', ... 著者 Davies, D.R, Evans, R.J, Bullard, J.M, Christensen, J, Green, L.S, Guiles, J.W, Ribble, W.K, Janjic, N, Jarvis, T.C. 登録日 2008-10-29 公開日 2009-01-20 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure of PolC reveals unique DNA binding and fidelity determinants. Proc.Natl.Acad.Sci.USA, 105, 2008
3F2D	DNA Polymerase PolC from Geobacillus kaustophilus complex with DNA, dGTP, Mn and Zn 分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*DAP*DTP*DAP*DAP*DCP*DGP*DGP*DTP*DTP*DGP*DCP*DCP*DCP*DGP*DTP*DCP*DTP*DCP*DAP*DCP*DTP*DG)-3', 5'-D(*DCP*DAP*DGP*DTP*DGP*DAP*DGP*DAP*DCP*DGP*DGP*DGP*DCP*DAP*DAP*DCP*DC)-3', ... 著者 Davies, D.R, Evans, R.J, Bullard, J.M, Christensen, J, Green, L.S, Guiles, J.W, Ribble, W.K, Janjic, N, Jarvis, T.C. 登録日 2008-10-29 公開日 2009-01-20 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.51 Å) 主引用文献 Structure of PolC reveals unique DNA binding and fidelity determinants. Proc.Natl.Acad.Sci.USA, 105, 2008
3EPZ	Structure of the replication foci-targeting sequence of human DNA cytosine methyltransferase DNMT1 分子名称: DNA (cytosine-5)-methyltransferase 1, GLYCEROL, SODIUM ION, ... 著者 Walker, J.R, Avvakumov, G.V, Xue, S, Li, Y, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC) 登録日 2008-09-30 公開日 2008-11-25 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (2.31 Å) 主引用文献 The replication focus targeting sequence (RFTS) domain is a DNA-competitive inhibitor of Dnmt1. J.Biol.Chem., 286, 2011
4FZY	Exonuclease X in complex with 12bp blunt-ended dsDNA 分子名称: DNA (5'-D(*TP*GP*TP*AP*GP*AP*TP*TP*CP*GP*AP*G)-3'), DNA (5'-D(P*CP*TP*CP*GP*AP*AP*TP*CP*TP*AP*CP*A)-3'), Exodeoxyribonuclease 10, ... 著者 Wang, T, Sun, H, Cheng, F, Bi, L, Jiang, T. 登録日 2012-07-08 公開日 2013-07-03 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Recognition and processing of double-stranded DNA by ExoX, a distributive 3'-5' exonuclease Nucleic Acids Res., 41, 2013
7L4F	Crystal structure of the DRM2-CAT DNA complex 分子名称: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, DNA (5'-D(*AP*TP*TP*CP*CP*TP*CP*CP*TP*(C49)P*AP*TP*CP*CP*TP*TP*TP*A)-3'), DNA (5'-D(*TP*AP*AP*AP*GP*GP*AP*TP*GP*AP*GP*GP*AP*GP*GP*AP*AP*T)-3'), ... 著者 Fang, J, Song, J. 登録日 2020-12-19 公開日 2021-08-04 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Substrate deformation regulates DRM2-mediated DNA methylation in plants. Sci Adv, 7, 2021
3ORC	CRYSTAL STRUCTURE OF AN ENGINEERED CRO MONOMER BOUND NONSPECIFICALLY TO DNA 分子名称: DNA (5'-D(*TP*AP*TP*CP*GP*AP*TP*A)-3'), PROTEIN (CRO REPRESSOR) 著者 Albright, R.A, Mossing, M.C, Matthews, B.W. 登録日 1998-04-23 公開日 1998-12-02 最終更新日 2023-08-02 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Crystal structure of an engineered Cro monomer bound nonspecifically to DNA: possible implications for nonspecific binding by the wild-type protein. Protein Sci., 7, 1998
4FZZ	Exonuclease X in complex with 5' overhanging duplex DNA 分子名称: DNA (5'-D(*GP*TP*CP*AP*TP*TP*GP*TP*GP*GP*AP*TP*CP*CP*GP*AP*G)-3'), Exodeoxyribonuclease 10, SODIUM ION 著者 Wang, T, Sun, H, Cheng, F, Bi, L, Jiang, T. 登録日 2012-07-08 公開日 2013-07-03 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Recognition and processing of double-stranded DNA by ExoX, a distributive 3'-5' exonuclease Nucleic Acids Res., 41, 2013
2BCU	DNA polymerase lambda in complex with a DNA duplex containing an unpaired Damp and a T:T mismatch 分子名称: 5'-D(*CP*AP*GP*TP*TP*CP*G)-3', 5'-D(*CP*GP*GP*CP*CP*GP*AP*TP*AP*CP*TP*G)-3', 5'-D(P*GP*CP*CP*G)-3', ... 著者 Garcia-Diaz, M, Bebenek, K, Krahn, J.M, Pedersen, L.C, Kunkel, T.A. 登録日 2005-10-19 公開日 2006-03-07 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural analysis of strand misalignment during DNA synthesis by a human DNA polymerase Cell(Cambridge,Mass.), 124, 2006
2BCV	DNA polymerase lambda in complex with Dttp and a DNA duplex containing an unpaired Dtmp 分子名称: 5'-D(*CP*AP*GP*TP*AP*(O2C))-3', 5'-D(*CP*GP*GP*CP*AP*GP*TP*TP*AP*CP*TP*G)-3', 5'-D(P*GP*CP*CP*G)-3', ... 著者 Garcia-Diaz, M, Bebenek, K, Krahn, J.M, Pedersen, L.C, Kunkel, T.A. 登録日 2005-10-19 公開日 2006-03-07 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural analysis of strand misalignment during DNA synthesis by a human DNA polymerase Cell(Cambridge,Mass.), 124, 2006

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