PDB: 13252 件ウェブページステータス検索Chemie searchBIRD

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2UUW	2.75 angstrom structure of the D347G D348G mutant structure of Sapporo Virus RdRp Polymerase 分子名称: RNA-DIRECTED RNA POLYMERASE 著者 Fullerton, S, Robel, I, Schuldt, L, Gebhardt, J, Tucker, P, Rohayem, J. 登録日 2007-03-07 公開日 2007-05-01 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.76 Å) 主引用文献 The 2.76 Angstrom Resolution Structure of the D347G D348G Mutant Structure of Sapporo Virus Rdrp Polymerase To be Published
1I6U	RNA-PROTEIN INTERACTIONS: THE CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN S8/RRNA COMPLEX FROM METHANOCOCCUS JANNASCHII 分子名称: 16S RRNA FRAGMENT, 30S RIBOSOMAL PROTEIN S8P, SULFATE ION 著者 Tishchenko, S, Nikulin, A, Fomenkova, N, Nevskaya, N, Nikonov, O, Dumas, P, Moine, H, Ehresmann, B, Ehresmann, C, Piendl, W, Lamzin, V, Garber, M, Nikonov, S. 登録日 2001-03-05 公開日 2001-08-03 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Detailed analysis of RNA-protein interactions within the ribosomal protein S8-rRNA complex from the archaeon Methanococcus jannaschii. J.Mol.Biol., 311, 2001
7QDY	RNA-bound human SKI complex 分子名称: Helicase SKI2W, RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3'), Tetratricopeptide repeat protein 37, ... 著者 Koegel, A, Keidel, A, Bonneau, F, Schaefer, I.B, Conti, E. 登録日 2021-12-01 公開日 2022-02-09 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 The human SKI complex regulates channeling of ribosome-bound RNA to the exosome via an intrinsic gatekeeping mechanism. Mol.Cell, 82, 2022
8R6W	Structure of the SFTSV L protein in a transcription-priming state with bound capped RNA [TRANSCRIPTION-PRIMING] 分子名称: RNA (5'-R(*(M7G)*AP*AP*A)-3'), RNA (5'-R(*AP*CP*AP*C)-3'), RNA (5'-R(*AP*CP*AP*CP*AP*GP*AP*GP*AP*CP*GP*CP*CP*CP*AP*G)-3'), ... 著者 Williams, H.M, Thorkelsson, S.R, Vogel, D, Busch, C, Milewski, M, Cusack, S, Grunewald, K, Quemin, E.R.J, Rosenthal, M. 登録日 2023-11-23 公開日 2024-04-24 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.35 Å) 主引用文献 Structural snapshots of phenuivirus cap-snatching and transcription. Nucleic Acids Res., 52, 2024
4L87	Crystal structure of the human seryl-tRNA synthetase in complex with Ser-SA at 2.9 Angstrom resolution 分子名称: 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE, MAGNESIUM ION, PHOSPHATE ION, ... 著者 Xu, X, Yang, X.-L. 登録日 2013-06-16 公開日 2013-10-02 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.897 Å) 主引用文献 Crystal Structure of Human Seryl-tRNA Synthetase and Ser-SA Complex Reveals a Molecular Lever Specific to Higher Eukaryotes. Structure, 21, 2013
5OMQ	Ternary complex of 9N DNA polymerase in the replicative state with three metal ions in the active site 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA Primer, DNA Template, ... 著者 Betz, K, Marx, A, Diederichs, K. 登録日 2017-08-01 公開日 2017-12-20 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.199 Å) 主引用文献 Crystal structures of ternary complexes of archaeal B-family DNA polymerases. PLoS ONE, 12, 2017
5OMV	Ternary complex of 9N DNA polymerase in the replicative state with two metal ions in the active site 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA polymerase, DNA primer, ... 著者 Betz, K, Marx, A, Diederichs, K. 登録日 2017-08-01 公開日 2017-12-20 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.003 Å) 主引用文献 Crystal structures of ternary complexes of archaeal B-family DNA polymerases. PLoS ONE, 12, 2017
1N53	SOLUTION STRUCTURE OF B. SUBTILIS T BOX ANTITERMINATOR RNA 分子名称: RNA (5'-R(*GP*AP*GP*GP*GP*UP*GP*GP*AP*AP*CP*CP*GP*CP*GP*C)-3'), RNA (5'-R(*GP*CP*GP*UP*CP*CP*CP*UP*C)-3') 著者 Gerdeman, M.S, Henkin, T.M, Hines, J.V. 登録日 2002-11-04 公開日 2003-04-29 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution Structure of the Bacillus subtilis T-box Antiterminator RNA: Seven Nucleotide Bulge Characterized by Stacking and Flexibility J.Mol.Biol., 326, 2003
3ADC	Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 2) 分子名称: L-seryl-tRNA(Sec) kinase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... 著者 Itoh, Y, Chiba, S, Sekine, S, Yokoyama, S. 登録日 2010-01-18 公開日 2010-07-28 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structural Basis for the Major Role of O-Phosphoseryl-tRNA Kinase in the UGA-Specific Encoding of Selenocysteine Mol.Cell, 39, 2010
4OI4	Protein complex of Clp1 bound to ATP and Mg2+ with Pcf11deltaN454deltaC563 of S. cerevisiae 分子名称: ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ... 著者 Dikfidan, A, Loll, B, Zeymer, C, Clausen, T, Meinhart, A. 登録日 2014-01-18 公開日 2014-05-14 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 RNA specificity and regulation of catalysis in the eukaryotic polynucleotide kinase clp1. Mol.Cell, 54, 2014
3ADD	Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 3) 分子名称: L-seryl-tRNA(Sec) kinase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... 著者 Itoh, Y, Chiba, S, Sekine, S, Yokoyama, S. 登録日 2010-01-18 公開日 2010-07-28 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural Basis for the Major Role of O-Phosphoseryl-tRNA Kinase in the UGA-Specific Encoding of Selenocysteine Mol.Cell, 39, 2010
3ADB	Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 1) 分子名称: L-seryl-tRNA(Sec) kinase, MAGNESIUM ION, PHOSPHATE ION, ... 著者 Itoh, Y, Chiba, S, Sekine, S, Yokoyama, S. 登録日 2010-01-18 公開日 2010-07-28 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural Basis for the Major Role of O-Phosphoseryl-tRNA Kinase in the UGA-Specific Encoding of Selenocysteine Mol.Cell, 39, 2010
8PJB	Cryo-EM structure of MLE in complex with UUC RNA and ADP 分子名称: ADENOSINE-5'-DIPHOSPHATE, Dosage compensation regulator, MAGNESIUM ION, ... 著者 Jagtap, P.K.A, Hennig, J. 登録日 2023-06-23 公開日 2023-11-01 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.62 Å) 主引用文献 Structural basis of RNA-induced autoregulation of the DExH-type RNA helicase maleless. Mol.Cell, 83, 2023
8PJJ	Cryo-EM structure of MLE in complex with SL7UUC RNA and ADP 分子名称: ADENOSINE-5'-DIPHOSPHATE, Dosage compensation regulator, SL7UUC RNA 著者 Jagtap, P.K.A, Hennig, J. 登録日 2023-06-23 公開日 2023-11-22 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (4.24 Å) 主引用文献 Structural basis of RNA-induced autoregulation of the DExH-type RNA helicase maleless. Mol.Cell, 83, 2023
1U2A	STEM LOOP IIA FROM U2SNRNA OF SACCHAROMYCES CEREVISIAE, NMR, MINIMIZED AVERAGE STRUCTURE 分子名称: RNA (5'-R(P*GP*GP*UP*CP*AP*GP*UP*GP*UP*AP*AP*CP*AP*AP*CP*UP*GP*AP*CP*C)-3') 著者 Stallings, S.C, Moore, P.B. 登録日 1997-08-19 公開日 1998-03-04 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The structure of an essential splicing element: stem loop IIa from yeast U2 snRNA. Structure, 5, 1997
2GMO	NMR-structure of an independently folded C-terminal domain of influenza polymerase subunit PB2 分子名称: Polymerase basic protein 2 著者 Boudet, J, Tarendeau, F, Guilligay, D, Mas, P, Bougault, C.M, Cusack, S, Simorre, J.-P, Hart, D.J. 登録日 2006-04-07 公開日 2007-02-27 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Structure and nuclear import function of the C-terminal domain of influenza virus polymerase PB2 subunit. Nat.Struct.Mol.Biol., 14, 2007
2JXV	Solution structure of a let-7 miRNA:lin-41 mRNA complex from C. elegans 分子名称: RNA (33-MER) 著者 Cevec, M, Thibaudeau, C, Plavec, J. 登録日 2007-11-30 公開日 2008-04-29 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structure of a let-7 miRNA:lin-41 mRNA complex from C. elegans. Nucleic Acids Res., 36, 2008
2KPV	NMR model of the first let-7 miRNA complementary site (LCS1) in 3'-UTR of lin-41 mRNA from C. elegans 分子名称: RNA (34-MER) 著者 Cevec, M, Thibaudeau, C, Plavec, J. 登録日 2009-10-20 公開日 2010-08-04 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 NMR structure of the let-7 miRNA interacting with the site LCS1 of lin-41 mRNA from Caenorhabditis elegans. Nucleic Acids Res., 38, 2010
2LDT	The 912-888 alternate conformation for helix 27 of E.coli 16S rRNA 分子名称: RNA (31-MER) 著者 Spano, M.N, Walter, N.G. 登録日 2011-06-02 公開日 2011-09-07 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution structure of an alternate conformation of helix27 from Escherichia coli16S rRNA. Biopolymers, 95, 2011
2ZZN	The complex structure of aTrm5 and tRNACys 分子名称: MAGNESIUM ION, RNA (71-MER), S-ADENOSYLMETHIONINE, ... 著者 Goto-Ito, S, Ito, T, Yokoyama, S. 登録日 2009-02-19 公開日 2009-09-15 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Tertiary structure checkpoint at anticodon loop modification in tRNA functional maturation. Nat.Struct.Mol.Biol., 16, 2009
8B9I	Cryo-EM structure of MLE in complex with ADP:AlF4 and UUC RNA 分子名称: ADENOSINE-5'-DIPHOSPHATE, Dosage compensation regulator, MAGNESIUM ION, ... 著者 Jagtap, P.K.A, Hennig, J. 登録日 2022-10-06 公開日 2023-10-18 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (2.95 Å) 主引用文献 Structural basis of RNA-induced autoregulation of the DExH-type RNA helicase maleless. Mol.Cell, 83, 2023
8B9G	Cryo-EM structure of MLE in complex with ADP:AlF4 and U10 RNA 分子名称: ADENOSINE-5'-DIPHOSPHATE, Dosage compensation regulator, RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'), ... 著者 Jagtap, P.K.A, Hennig, J. 登録日 2022-10-06 公開日 2023-10-18 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (2.86 Å) 主引用文献 Structural basis of RNA-induced autoregulation of the DExH-type RNA helicase maleless. Mol.Cell, 83, 2023
6L1W	Zinc-finger Antiviral Protein (ZAP) bound to RNA 分子名称: RNA (5'-R(*CP*GP*UP*CP*GP*U)-3'), ZINC ION, Zinc finger CCCH-type antiviral protein 1 著者 Luo, X, Wang, X, Gao, Y, Zhu, J, Liu, S, Gao, G, Gao, P. 登録日 2019-09-30 公開日 2020-01-01 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.194 Å) 主引用文献 Molecular Mechanism of RNA Recognition by Zinc-Finger Antiviral Protein. Cell Rep, 30, 2020
1XSG	Solution structure of E.coli RNase P RNA P4 stem oligoribonucleotide, U69A mutation 分子名称: RNase P RNA P4 stem 著者 Schmitz, M. 登録日 2004-10-19 公開日 2004-12-28 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Change of RNase P RNA function by single base mutation correlates with perturbation of metal ion binding in P4 as determined by NMR spectroscopy Nucleic Acids Res., 32, 2004
1XSH	Solution structure of E.coli RNase P RNA P4 stem oligoribonucleotide, U69C/C70U mutation 分子名称: RNase P RNA P4 stem 著者 Schmitz, M. 登録日 2004-10-19 公開日 2004-12-28 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Change of RNase P RNA function by single base mutation correlates with perturbation of metal ion binding in P4 as determined by NMR spectroscopy Nucleic Acids Res., 32, 2004

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