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2KRE
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BU of 2kre by Molmil
Solution structure of E4B/UFD2A U-Box domain
分子名称: Ubiquitin conjugation factor E4 B
著者Nomine, Y, Wasielewski, E, Botuyan, M, Mer, G.
登録日2009-12-16
公開日2009-12-29
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Molecular Basis for the Association of Human E4B U Box Ubiquitin Ligase with E2-Conjugating Enzymes UbcH5c and Ubc4.
Structure, 18, 2010
6F0L
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BU of 6f0l by Molmil
S. cerevisiae MCM double hexamer bound to duplex DNA
分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (62-MER), DNA replication licensing factor MCM2, ...
著者Abid Ali, F, Pye, V.E, Douglas, M.E, Locke, J, Nans, A, Diffley, J.F.X, Costa, A.
登録日2017-11-20
公開日2017-12-06
最終更新日2019-12-11
実験手法ELECTRON MICROSCOPY (4.77 Å)
主引用文献Cryo-EM structure of a licensed DNA replication origin.
Nat Commun, 8, 2017
6UTZ
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BU of 6utz by Molmil
E. coli sigma-S transcription initiation complex with a 6-nt RNA ("Fresh" crystal soaked with CTP and UTP for 30 minutes)
分子名称: DIPHOSPHATE, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
著者Zuo, Y, De, S, Steitz, T.A.
登録日2019-10-30
公開日2020-08-26
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.803 Å)
主引用文献Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation.
Iscience, 23, 2020
2KSZ
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BU of 2ksz by Molmil
The solution structure of the Magnesium bound soybean calmodulin isoform 4 N-domain
分子名称: MAGNESIUM ION, Putative uncharacterized protein
著者Huang, H, Ishida, H, Vogel, H.J.
登録日2010-01-14
公開日2010-03-09
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献The solution structure of the Mg2+ form of soybean calmodulin isoform 4 reveals unique features of plant calmodulins in resting cells.
Protein Sci., 19, 2010
8K4W
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BU of 8k4w by Molmil
Structure of a triple-helix region of human collagen type I from Trautec
分子名称: CHLORIDE ION, triple-helix region of human collagen type I
著者Chu, Y, Zhai, Y, Fan, X, Li, J, Wang, L, Fu, S, Feng, P, Qian, S.
登録日2023-07-20
公開日2023-08-02
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structure of a triple-helix region of human collagen type I from Trautec.
To Be Published
7LAD
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BU of 7lad by Molmil
Clobetasol propionate bound to CYP3A5
分子名称: Clobetasol propionate, Cytochrome P450 3A5, PROTOPORPHYRIN IX CONTAINING FE
著者Buchman, C.D, Miller, D, Wang, J, Jayaraman, S, Chen, T.
登録日2021-01-06
公開日2021-10-27
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Unraveling the Structural Basis of Selective Inhibition of Human Cytochrome P450 3A5.
J.Am.Chem.Soc., 143, 2021
2KXM
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BU of 2kxm by Molmil
Solution NMR Structure of the 27 nucleotide engineered neomycin sensing riboswitch RNA-ribostmycin complex
分子名称: RIBOSTAMYCIN, RNA (27-MER)
著者Duchardt-Ferner, E, Weigand, J.E, Ohlenschlager, O, Schmidtke, S.R, Suess, B, Wohnert, J.
登録日2010-05-10
公開日2011-04-20
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Highly modular structure and ligand binding by conformational capture in a minimalistic riboswitch.
Angew.Chem.Int.Ed.Engl., 49, 2010
2KMJ
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BU of 2kmj by Molmil
High resolution NMR solution structure of a complex of HIV-2 TAR RNA and a synthetic tripeptide in a 1:2 stoichiometry
分子名称: Pyrimidinylpeptide, RNA (28-MER)
著者Ferner, J, Suhartono, M, Breitung, S, Jonker, H.R.A, Hennig, M, Woehnert, J, Goebel, M, Schwalbe, H.
登録日2009-07-30
公開日2009-08-18
最終更新日2023-11-15
実験手法SOLUTION NMR
主引用文献Structures of HIV TAR RNA-ligand complexes reveal higher binding stoichiometries.
Chembiochem, 10, 2009
8DYV
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BU of 8dyv by Molmil
Structure of human cytoplasmic dynein-1 bound to one Lis1
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cytoplasmic dynein 1 heavy chain 1, ...
著者Reimer, J.M, DeSantis, M, Reck-Peterson, S.L, Leschziner, A.E.
登録日2022-08-05
公開日2023-02-01
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.97 Å)
主引用文献Structures of human dynein in complex with the lissencephaly 1 protein, LIS1.
Elife, 12, 2023
7CYC
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BU of 7cyc by Molmil
Cryo-EM structures of Alphacoronavirus spike glycoprotein
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
著者Song, X, Shi, Y, Ding, W, Liu, Z.J, Peng, G.
登録日2020-09-03
公開日2020-12-23
最終更新日2021-06-02
実験手法ELECTRON MICROSCOPY (3.21 Å)
主引用文献Cryo-EM analysis of the HCoV-229E spike glycoprotein reveals dynamic prefusion conformational changes.
Nat Commun, 12, 2021
6VEN
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BU of 6ven by Molmil
Yeast COMPASS in complex with a ubiquitinated nucleosome
分子名称: 601 DNA (146-MER), COMPASS component BRE2, COMPASS component SDC1, ...
著者Worden, E.J, Wolberger, C.
登録日2020-01-02
公開日2020-01-15
最終更新日2020-01-22
実験手法ELECTRON MICROSCOPY (3.37 Å)
主引用文献Structural basis for COMPASS recognition of an H2B-ubiquitinated nucleosome.
Elife, 9, 2020
7D4A
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BU of 7d4a by Molmil
The Crystal Structure of human JMJD2A Tudor domain from Biortus
分子名称: Lysine-specific demethylase 4A, SULFATE ION
著者Wang, F, Lv, Z, Cheng, W, Lin, D, Ju, C, Bao, X, Zhu, B.
登録日2020-09-23
公開日2020-10-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.201 Å)
主引用文献The Crystal Structure of human JMJD2A from Biortus.
To Be Published
8DYU
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BU of 8dyu by Molmil
Structure of human cytoplasmic dynein-1 bound to two Lis1 proteins
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cytoplasmic dynein 1 heavy chain 1, ...
著者Reimer, J.M, DeSantis, M, Reck-Peterson, S.L, Leschziner, A.E.
登録日2022-08-05
公開日2023-02-01
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structures of human dynein in complex with the lissencephaly 1 protein, LIS1.
Elife, 12, 2023
7MBN
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BU of 7mbn by Molmil
Cryo-EM structure of MLL1-NCP (H3K4M) complex, mode02
分子名称: DNA (146-MER), Histone H2A, Histone H2B 1.1, ...
著者Park, S.H, Ayoub, A, Lee, Y.T, Dou, Y, Cho, U.
登録日2021-04-01
公開日2021-12-29
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY
主引用文献Regulation of MLL1 Methyltransferase Activity in Two Distinct Nucleosome Binding Modes.
Biochemistry, 61, 2022
7MBM
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BU of 7mbm by Molmil
Cryo-EM structure of MLL1-NCP (H3K4M) complex, mode01
分子名称: DNA (145-MER), Histone H2A, Histone H2B 1.1, ...
著者Park, S.H, Ayoub, A, Lee, Y.T, Dou, Y, Cho, U.
登録日2021-04-01
公開日2021-12-29
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY
主引用文献Regulation of MLL1 Methyltransferase Activity in Two Distinct Nucleosome Binding Modes.
Biochemistry, 61, 2022
8KC7
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BU of 8kc7 by Molmil
Rpd3S histone deacetylase complex
分子名称: Chromatin modification-related protein EAF3, Histone deacetylase RPD3, Transcriptional regulatory protein RCO1, ...
著者Dong, S, Li, H, Wang, M, Rasheed, N, Zou, B, Gao, X, Guan, J, Li, W, Zhang, J, Wang, C, Zhou, N, Shi, X, Li, M, Zhou, M, Huang, J, Li, H, Zhang, Y, Wong, K.H, Zhang, X, Chao, W.C.H, He, J.
登録日2023-08-06
公開日2023-09-13
最終更新日2023-10-18
実験手法ELECTRON MICROSCOPY (3.46 Å)
主引用文献Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex.
Cell Res., 33, 2023
7M4N
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BU of 7m4n by Molmil
Crystal structure of RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin
分子名称: E3 ubiquitin-protein ligase RNF216, GLYCEROL, SULFATE ION, ...
著者Cotton, T.R, Lechtenberg, B.C.
登録日2021-03-21
公開日2022-01-05
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.52 Å)
主引用文献Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216.
Mol.Cell, 82, 2022
6UU9
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BU of 6uu9 by Molmil
E. coli mutant sigma-S transcription initiation complex with an 8-nt RNA ("Fresh" mutant crystal soaked with GTP, UTP, CTP, and ddATP for 30 minutes)
分子名称: 2',3'-DIDEOXYADENOSINE-5'-MONOPHOSPHATE, DIPHOSPHATE, DNA-directed RNA polymerase subunit alpha, ...
著者Zuo, Y, De, S, Steitz, T.A.
登録日2019-10-30
公開日2020-08-26
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (5.4 Å)
主引用文献Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation.
Iscience, 23, 2020
7MK0
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BU of 7mk0 by Molmil
Trypanosoma cruzi Nucleoside Diphosphate Kinase 1 form a quinary multihexameric structure
分子名称: Nucleoside diphosphate kinase
著者Gomez, J.A, Aguilar, C.F.
登録日2021-04-21
公開日2022-01-12
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献X-ray diffraction and in vivo studies reveal the quinary structure of Trypanosoma cruzi nucleoside diphosphate kinase 1: a novel helical oligomer structure.
Acta Crystallogr D Struct Biol, 78, 2022
6F6Z
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BU of 6f6z by Molmil
Mouse Thymidylate Synthase Cocrystallized with N(4)OHdCMP and Soaked in Methylenetetrahydrofolate
分子名称: (2~{S})-2-[[4-[[(6~{R})-2-azanyl-4-oxidanylidene-5,6,7,8-tetrahydro-1~{H}-pteridin-6-yl]methyl-methyl-amino]phenyl]carbonylamino]pentanedioic acid, 2'-deoxy-N-hydroxycytidine 5'-(dihydrogen phosphate), Thymidylate synthase
著者Wilk, P, Jarmula, A, Maj, P, Rode, W.
登録日2017-12-06
公開日2019-01-30
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.127 Å)
主引用文献Molecular Mechanism of Thymidylate Synthase Inhibition by N4-Hydroxy-dCMP in View of Spectrophotometric and Crystallographic Studies
Int J Mol Sci, 22, 2021
2KXS
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BU of 2kxs by Molmil
ZO1 ZU5 domain in complex with GRINL1A peptide
分子名称: Tight junction protein ZO-1,Myocardial zonula adherens protein
著者Wen, W, Zhang, M.
登録日2010-05-12
公開日2011-03-30
最終更新日2024-04-10
実験手法SOLUTION NMR
主引用文献Cdc42-dependent formation of the ZO-1/MRCKb complex at the leading edge controls cell migration
Embo J., 30, 2011
2KY9
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BU of 2ky9 by Molmil
Solution NMR Structure of ydhK C-terminal Domain from B.subtilis, Northeast Structural Genomics Consortium Target Target SR518
分子名称: Uncharacterized protein ydhK
著者Eletsky, A, Sukumaran, D.K, Lee, H, Lee, D, Ciccosanti, C, Janjua, H, Liu, J, Rost, B, Acton, T.B, Xiao, R, Everett, J.K, Prestegard, J.H, Montelione, G.T, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
登録日2010-05-21
公開日2010-07-21
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献The copBL operon protects Staphylococcus aureus from copper toxicity: CopL is an extracellular membrane-associated copper-binding protein.
J.Biol.Chem., 294, 2019
2KWO
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BU of 2kwo by Molmil
Solution structure of the double PHD (plant homeodomain) fingers of human transcriptional protein DPF3b bound to a histone H4 peptide containing N-terminal acetylation at Serine 1
分子名称: Histone peptide, ZINC ION, Zinc finger protein DPF3
著者Zeng, L, Zhang, Q, Li, S, Plotnikov, A.N, Walsh, M.J, Zhou, M.
登録日2010-04-14
公開日2010-07-14
最終更新日2013-06-19
実験手法SOLUTION NMR
主引用文献Mechanism and regulation of acetylated histone binding by the tandem PHD finger of DPF3b.
Nature, 466, 2010
6UU4
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BU of 6uu4 by Molmil
E. coli sigma-S transcription initiation complex with a 3-nt RNA ("old" crystal soaked with GTP and dinucleotide GpA for 30 minutes)
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Zuo, Y, De, S, Steitz, T.A.
登録日2019-10-30
公開日2020-08-26
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (4.305 Å)
主引用文献Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation.
Iscience, 23, 2020
7MGM
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BU of 7mgm by Molmil
Structure of yeast cytoplasmic dynein with AAA3 Walker B mutation bound to Lis1
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Lahiri, I, Reimer, J.M, Leschziner, A.E.
登録日2021-04-12
公開日2022-01-19
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural basis for cytoplasmic dynein-1 regulation by Lis1.
Elife, 11, 2022

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