Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3ISE
DownloadVisualize
BU of 3ise by Molmil
Structure of mineralized Bfrb (double soak) from Pseudomonas aeruginosa to 2.8A Resolution
分子名称: Bacterioferritin, FE (III) ION, POTASSIUM ION, ...
著者Lovell, S, Weeratunga, S.K, Battaile, K.P, Rivera, M.
登録日2009-08-25
公開日2010-02-02
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural Studies of Bacterioferritin B from Pseudomonas aeruginosa Suggest a Gating Mechanism for Iron Uptake via the Ferroxidase Center
Biochemistry, 49, 2010
8HZM
DownloadVisualize
BU of 8hzm by Molmil
A new fluorescent RNA aptamer bound with N, manganese soak
分子名称: (5~{Z})-5-[[4-[2-hydroxyethyl(methyl)amino]phenyl]methylidene]-3-methyl-2-[(~{E})-2-phenylethenyl]imidazol-4-one, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Huang, K.Y, Ren, A.M.
登録日2023-01-09
公開日2024-06-19
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural basis of a small monomeric Clivia fluorogenic RNA with a large Stokes shift.
Nat.Chem.Biol., 2024
8HZE
DownloadVisualize
BU of 8hze by Molmil
A new fluorescent RNA aptamer bound with N
分子名称: (5~{Z})-5-[[4-[2-hydroxyethyl(methyl)amino]phenyl]methylidene]-3-methyl-2-[(~{E})-2-phenylethenyl]imidazol-4-one, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Huang, K.Y, Ren, A.M.
登録日2023-01-09
公開日2024-06-19
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献Structural basis of a small monomeric Clivia fluorogenic RNA with a large Stokes shift.
Nat.Chem.Biol., 2024
2J4F
DownloadVisualize
BU of 2j4f by Molmil
Torpedo acetylcholinesterase - Hg heavy-atom derivative
分子名称: ACETYLCHOLINESTERASE, MERCURY (II) ION
著者Kreimer, D.I, Dolginova, E.A, Raves, M, Sussman, J.L, Silman, I, Weiner, L.
登録日2006-08-30
公開日2006-09-05
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献A Metastable State of Torpedo Californica Acetylcholinesterase Generated by Modification with Organomercurials
Biochemistry, 33, 1994
5L5E
DownloadVisualize
BU of 5l5e by Molmil
Yeast 20S proteasome with human beta5i (1-138) and human beta6 (97-111; 118-133) in complex with carfilzomib
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, MAGNESIUM ION, ...
著者Groll, M, Huber, E.M.
登録日2016-05-28
公開日2016-11-09
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献A humanized yeast proteasome identifies unique binding modes of inhibitors for the immunosubunit beta 5i.
EMBO J., 35, 2016
8HZJ
DownloadVisualize
BU of 8hzj by Molmil
A new fluorescent RNA aptamer bound with N571
分子名称: (5~{Z})-5-[[3,5-bis(fluoranyl)-4-oxidanyl-phenyl]methylidene]-3-methyl-2-[(~{E})-2-phenylethenyl]imidazol-4-one, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Huang, K.Y, Ren, A.M.
登録日2023-01-09
公開日2024-06-19
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural basis of a small monomeric Clivia fluorogenic RNA with a large Stokes shift.
Nat.Chem.Biol., 2024
1BZK
DownloadVisualize
BU of 1bzk by Molmil
STRUCTURAL STUDIES ON THE EFFECTS OF THE DELETION IN THE RED CELL ANION EXCHANGER (BAND3, AE1) ASSOCIATED WITH SOUTH EAST ASIAN OVALOCYTOSIS.
分子名称: PROTEIN (BAND 3 ANION TRANSPORT PROTEIN)
著者Chambers, E.J, Bloomberg, G.B, Ring, S.M, Tanner, M.J.A.
登録日1998-11-01
公開日1999-06-01
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Structural studies on the effects of the deletion in the red cell anion exchanger (band 3, AE1) associated with South East Asian ovalocytosis.
J.Mol.Biol., 285, 1999
6SJY
DownloadVisualize
BU of 6sjy by Molmil
Diaminobutyrate acetyltransferase EctA from Paenibacillus lautus in complex with its product ADABA
分子名称: (2~{S})-4-acetamido-2-azanyl-butanoic acid, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, ...
著者Richter, A.A, Kobus, S, Czech, L, Hoeppner, A, Bremer, E, Smits, S.H.J.
登録日2019-08-14
公開日2020-01-29
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The architecture of the diaminobutyrate acetyltransferase active site provides mechanistic insight into the biosynthesis of the chemical chaperone ectoine.
J.Biol.Chem., 295, 2020
5L5Y
DownloadVisualize
BU of 5l5y by Molmil
Yeast 20S proteasome with human beta5c (1-138) and human beta6 (97-111; 118-133) in complex with carfilzomib
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, MAGNESIUM ION, ...
著者Groll, M, Huber, E.M.
登録日2016-05-28
公開日2016-11-09
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献A humanized yeast proteasome identifies unique binding modes of inhibitors for the immunosubunit beta 5i.
EMBO J., 35, 2016
8HZD
DownloadVisualize
BU of 8hzd by Molmil
A new fluorescent RNA aptamer bound with N618
分子名称: 4-[(~{E})-2-[(4~{Z})-4-[[3,5-bis(fluoranyl)-4-oxidanyl-phenyl]methylidene]-1-methyl-5-oxidanylidene-imidazol-2-yl]ethenyl]benzenecarbonitrile, MAGNESIUM ION, RNA (36-MER)
著者Song, Q.Q, Ren, A.M.
登録日2023-01-09
公開日2024-06-19
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Structural basis of a small monomeric Clivia fluorogenic RNA with a large Stokes shift.
Nat.Chem.Biol., 2024
8HZK
DownloadVisualize
BU of 8hzk by Molmil
A new fluorescent RNA aptamer bound with N, iridium hexammine soak
分子名称: (5~{Z})-5-[[4-[2-hydroxyethyl(methyl)amino]phenyl]methylidene]-3-methyl-2-[(~{E})-2-phenylethenyl]imidazol-4-one, DI(HYDROXYETHYL)ETHER, IRIDIUM HEXAMMINE ION, ...
著者Huang, K.Y, Ren, A.M.
登録日2023-01-09
公開日2024-06-19
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis of a small monomeric Clivia fluorogenic RNA with a large Stokes shift.
Nat.Chem.Biol., 2024
8HZF
DownloadVisualize
BU of 8hzf by Molmil
A new fluorescent RNA aptamer bound with N565
分子名称: (5~{Z})-5-[[3,5-bis(fluoranyl)-4-oxidanyl-phenyl]methylidene]-2-[(~{E})-2-(4-hydroxyphenyl)ethenyl]-3-methyl-imidazol-4-one, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Huang, K.Y, Ren, A.M.
登録日2023-01-09
公開日2024-06-19
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural basis of a small monomeric Clivia fluorogenic RNA with a large Stokes shift.
Nat.Chem.Biol., 2024
4XBM
DownloadVisualize
BU of 4xbm by Molmil
X-ray crystal structure of Notch ligand Delta-like 1
分子名称: Delta-like protein 1, alpha-L-fucopyranose
著者Kershaw, N.J, Burgess, A.W, Church, N.L, Luo, C.S, Adam, T.E.
登録日2014-12-17
公開日2015-03-11
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Notch ligand delta-like1: X-ray crystal structure and binding affinity.
Biochem.J., 468, 2015
3IX1
DownloadVisualize
BU of 3ix1 by Molmil
Periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding protein from Bacillus halodurans
分子名称: N-[(4-amino-2-methylpyrimidin-5-yl)methyl]formamide, N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding protein
著者Bale, S, Rajashankar, K.R, Perry, K, Begley, T.P, Ealick, S.E.
登録日2009-09-03
公開日2010-10-13
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献HMP Binding Protein ThiY and HMP-P Synthase THI5 Are Structural Homologues.
Biochemistry, 49, 2010
2XX8
DownloadVisualize
BU of 2xx8 by Molmil
Crystal structure of N,N-dimethyl-4-(3-(trifluoromethyl)-4,5,6,7- tetrahydro-1H-indazol-1-yl)benzamide in complex with the ligand binding domain of the Rat GluA2 receptor and glutamate at 2.2A resolution.
分子名称: GLUTAMATE RECEPTOR 2, GLUTAMIC ACID, N,N-DIMETHYL-4-[3-(TRIFLUOROMETHYL)-4,5,6,7-TETRAHYDRO-1H-INDAZOL-1-YL]BENZAMIDE, ...
著者Ward, S.E, Harries, M, Aldegheri, L, Austin, N.E, Ballantine, S, Ballini, E, Bradley, D.M, Bax, B.D, Clarke, B.P, Harris, A.J, Harrison, S.A, Melarange, R.A, Mookherjee, C, Mosley, J, DalNegro, G, Oliosi, B, Smith, K.J, Thewlis, K.M, Woollard, P.M, Yusaf, S.P.
登録日2010-11-09
公開日2011-04-27
最終更新日2011-09-28
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Integration of Lead Optimization with Crystallography for a Membrane-Bound Ion Channel Target: Discovery of a New Class of Ampa Receptor Positive Allosteric Modulators.
J.Med.Chem., 54, 2011
8HZL
DownloadVisualize
BU of 8hzl by Molmil
A new fluorescent RNA aptamer_III bound with N
分子名称: (5~{Z})-5-[[4-[2-hydroxyethyl(methyl)amino]phenyl]methylidene]-3-methyl-2-[(~{E})-2-phenylethenyl]imidazol-4-one, MAGNESIUM ION, RNA (84-MER)
著者Huang, K.Y, Ren, A.M.
登録日2023-01-09
公開日2024-06-19
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural basis of a small monomeric Clivia fluorogenic RNA with a large Stokes shift.
Nat.Chem.Biol., 2024
8TWU
DownloadVisualize
BU of 8twu by Molmil
Crystal structure of Cytochrome P450 AspB bound to N1-methylated cyclo-L-Trp-L-Pro
分子名称: (3S,5S,8aS)-3-[(1-methyl-1H-indol-3-yl)methyl]hexahydropyrrolo[1,2-a]pyrazine-1,4-dione, Cytochrome P450 AspB, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Gering, H.E, Li, X, Tang, H, Swartz, P.D, Chang, W.-C, Makris, T.M.
登録日2023-08-21
公開日2023-09-20
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献A Ferric-Superoxide Intermediate Initiates P450-Catalyzed Cyclic Dipeptide Dimerization.
J.Am.Chem.Soc., 145, 2023
5OGX
DownloadVisualize
BU of 5ogx by Molmil
Crystal structure of Amycolatopsis cytochrome P450 reductase GcoB.
分子名称: BROMIDE ION, Cytochrome P450 reductase, FE2/S2 (INORGANIC) CLUSTER, ...
著者Mallinson, S.J.B, Johnson, C.W, Neidle, E.L, Beckham, G.T, McGeehan, J.E.
登録日2017-07-13
公開日2018-07-04
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献A promiscuous cytochrome P450 aromatic O-demethylase for lignin bioconversion.
Nat Commun, 9, 2018
8TID
DownloadVisualize
BU of 8tid by Molmil
Combined linker domain of N-DRC and associated proteins Tetrahymena
分子名称: AAA family ATPase CDC48 subfamily protein, CFAP20, Calmodulin 7-2, ...
著者Ghanaeian, A.G, Majhi, S.M, McCaffrey, C.M, Nami, B.N, Black, C.B, Yang, S.K, Legal, T.L, Papoulas, O.P, Janowska, M.J, Valente-Paterno, M.V, Marcotte, E.M, Wloga, D.W, Bui, K.H.
登録日2023-07-19
公開日2023-09-27
最終更新日2024-04-03
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Integrated modeling of the Nexin-dynein regulatory complex reveals its regulatory mechanism.
Nat Commun, 14, 2023
9C6N
DownloadVisualize
BU of 9c6n by Molmil
ARP module of the human TIP60 complex
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Actin, cytoplasmic 1, ...
著者Yang, Z, Mameri, A, Florez Ariza, A.J, Cote, J, Nogales, E.
登録日2024-06-07
公開日2024-08-21
実験手法ELECTRON MICROSCOPY (3.29 Å)
主引用文献Structural insights into the human NuA4/TIP60 acetyltransferase and chromatin remodeling complex.
Science, 2024
6SU2
DownloadVisualize
BU of 6su2 by Molmil
Trypanosoma congolense pyruvate kinase in complex with citrate and glycerol
分子名称: 1,6-di-O-phosphono-beta-D-fructofuranose, MAGNESIUM ION, Pyruvate kinase
著者Sterckx, Y.G.-J, Pinto Torres, J.E.
登録日2019-09-12
公開日2020-03-04
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural and kinetic characterization of Trypanosoma congolense pyruvate kinase.
Mol.Biochem.Parasitol., 236, 2020
6SPC
DownloadVisualize
BU of 6spc by Molmil
Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate
分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
著者Halfon, Y, Jimenez-Fernande, A, La Ros, R, Espinos, R, Krogh Johansen, H, Matzov, D, Eyal, Z, Bashan, A, Zimmerman, E, Belousoff, M, Molin, S, Yonath, A.
登録日2019-09-01
公開日2019-10-16
最終更新日2019-11-06
実験手法ELECTRON MICROSCOPY (2.95 Å)
主引用文献Structure ofPseudomonas aeruginosaribosomes from an aminoglycoside-resistant clinical isolate.
Proc.Natl.Acad.Sci.USA, 116, 2019
8TAH
DownloadVisualize
BU of 8tah by Molmil
Cryo-EM structure of Cortactin-bound to Arp2/3 complex
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Actin-related protein 2, Actin-related protein 2/3 complex subunit 1A, ...
著者Fregoso, F.E, van Eeuwen, T, Dominguez, R.
登録日2023-06-27
公開日2023-09-27
最終更新日2024-01-31
実験手法ELECTRON MICROSCOPY (2.89 Å)
主引用文献Mechanism of synergistic activation of Arp2/3 complex by cortactin and WASP-family proteins.
Nat Commun, 14, 2023
7KEY
DownloadVisualize
BU of 7key by Molmil
Protein Tyrosine Phosphatase 1B, Apo
分子名称: ACETATE ION, MAGNESIUM ION, Tyrosine-protein phosphatase non-receptor type 1
著者Battaile, K.P, Chirgadze, Y, Ruzanov, M, Romanov, V, Lam, K, Gordon, R, Lin, A, Lam, R, Pai, E, Chirgadze, N.
登録日2020-10-13
公開日2022-01-19
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.771 Å)
主引用文献Signal transfer in human protein tyrosine phosphatase PTP1B from allosteric inhibitor P00058.
J.Biomol.Struct.Dyn., 2021
8TQE
DownloadVisualize
BU of 8tqe by Molmil
XptA2 wild type
分子名称: XptA2
著者Martin, C.L, Binshtein, E.M, Aller, S.G.
登録日2023-08-07
公開日2023-09-27
最終更新日2023-10-11
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structures of the Insecticidal Toxin Complex Subunit XptA2 Highlight Roles for Flexible Domains.
Int J Mol Sci, 24, 2023

224004

件を2024-08-21に公開中

PDB statisticsPDBj update infoContact PDBjnumon