PDB: 8861 件ウェブページステータス検索Chemie searchBIRD

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5OF4	The cryo-EM structure of human TFIIH 分子名称: General transcription factor IIH subunit 2, General transcription factor IIH subunit 3, General transcription factor IIH subunit 4,p52,General transcription factor IIH subunit 4, ... 著者 Greber, B.J, Nguyen, T.H.D, Fang, J, Afonine, P.V, Adams, P.D, Nogales, E. 登録日 2017-07-10 公開日 2017-09-13 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 The cryo-electron microscopy structure of human transcription factor IIH. Nature, 549, 2017
5XM8	Crystal structure of AsfvPolX in complex with DNA enzyme and Pb. 分子名称: DNA (23-mer), DNA (36-MER), LEAD (II) ION, ... 著者 Liu, H.H, Gan, J.H. 登録日 2017-05-13 公開日 2018-01-24 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Crystal structure of an RNA-cleaving DNAzyme. Nat Commun, 8, 2017
7K9Y	GsI-IIC RT Template-Switching Complex (twinned) 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(*CP*TP*CP*CP*AP*GP*GP*CP*AP*AP*C)-3'), MAGNESIUM ION, ... 著者 Stamos, J.L, Lentzsch, A.M. 登録日 2020-09-29 公開日 2021-08-18 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structural basis for template switching by a group II intron-encoded non-LTR-retroelement reverse transcriptase. J.Biol.Chem., 297, 2021
8KD7	Rpd3S in complex with nucleosome with H3K36MLA modification and 167bp DNA 分子名称: 167bp DNA, Chromatin modification-related protein EAF3, Histone H2A, ... 著者 Dong, S, Li, H, Wang, M, Rasheed, N, Zou, B, Gao, X, Guan, J, Li, W, Zhang, J, Wang, C, Zhou, N, Shi, X, Li, M, Zhou, M, Huang, J, Li, H, Zhang, Y, Wong, K.H, Chang, X, Chao, W.C.H, He, J. 登録日 2023-08-09 公開日 2023-09-13 最終更新日 2023-10-11 実験手法 ELECTRON MICROSCOPY (3.09 Å) 主引用文献 Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex. Cell Res., 33, 2023
5IVW	Human core TFIIH bound to DNA within the PIC 分子名称: General transcription factor IIH subunit 2, General transcription factor IIH subunit 3, General transcription factor IIH subunit 4, ... 著者 He, Y, Yan, C, Fang, J, Inouye, C, Tjian, R, Ivanov, I, Nogales, E. 登録日 2016-03-21 公開日 2016-05-18 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (10 Å) 主引用文献 Near-atomic resolution visualization of human transcription promoter opening. Nature, 533, 2016
8TIE	Double nuclear outer ring of Nup84-complexes from the yeast NPC 分子名称: NUP133 isoform 1, NUP145 isoform 1, Nucleoporin NUP120, ... 著者 Akey, C.W, Echeverria, I, Ouch, C, Fernandez-Martinez, J, Rout, M.P. 登録日 2023-07-19 公開日 2023-10-11 実験手法 ELECTRON MICROSCOPY (8.1 Å) 主引用文献 Implications of a multiscale structure of the yeast nuclear pore complex. Mol.Cell, 83, 2023
5M4S	Transcription factor TFIIA as a single chain protein 分子名称: Transcription initiation factor IIA subunit 2,Transcription initiation factor IIA subunit 1,Transcription initiation factor IIA subunit 1 著者 Kandiah, E, Gupta, K. 登録日 2016-10-19 公開日 2017-11-29 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.38 Å) 主引用文献 Architecture of TAF11/TAF13/TBP complex suggests novel regulation properties of general transcription factor TFIID. Elife, 6, 2017
8KD5	Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class2 分子名称: 187bp DNA, Chromatin modification-related protein EAF3, Histone H2A, ... 著者 Dong, S, Li, H, Wang, M, Rasheed, N, Zou, B, Gao, X, Guan, J, Li, W, Zhang, J, Wang, C, Zhou, N, Shi, X, Li, M, Zhou, M, Huang, J, Li, H, Zhang, Y, Wong, K.H, Chang, X, Chao, W.C.H, He, J. 登録日 2023-08-09 公開日 2023-09-13 最終更新日 2023-10-11 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex. Cell Res., 33, 2023
8KD6	Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class3 分子名称: 187bp DNA, Chromatin modification-related protein EAF3, Histone H2A, ... 著者 Dong, S, Li, H, Wang, M, Rasheed, N, Zou, B, Gao, X, Guan, J, Li, W, Zhang, J, Wang, C, Zhou, N, Shi, X, Li, M, Zhou, M, Huang, J, Li, H, Zhang, Y, Wong, K.H, Zhang, X, Chao, W.C.H, He, J. 登録日 2023-08-09 公開日 2023-09-13 最終更新日 2023-10-11 実験手法 ELECTRON MICROSCOPY (3.07 Å) 主引用文献 Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex. Cell Res., 33, 2023
8KD3	Rpd3S in complex with nucleosome with H3K36MLA modification, H3K9Q mutation and 187bp DNA 分子名称: 187bp DNA, Chromatin modification-related protein EAF3, Histone H2A, ... 著者 Dong, S, Li, H, Wang, M, Rasheed, N, Zou, B, Gao, X, Guan, J, Li, W, Zhang, J, Wang, C, Zhou, N, Shi, X, Li, M, Zhou, M, Huang, J, Li, H, Zhang, Y, Wong, K.H, Zhang, X, Chao, W.C.H, He, J. 登録日 2023-08-09 公開日 2023-09-13 最終更新日 2023-10-11 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex. Cell Res., 33, 2023
8KD4	Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class1 分子名称: 187bp DNA, Chromatin modification-related protein EAF3, Histone H2A, ... 著者 Dong, S, Li, H, Wang, M, Rasheed, N, Zou, B, Gao, X, Guan, J, Li, W, Zhang, J, Wang, C, Zhou, N, Shi, X, Li, M, Zhou, M, Huang, J, Li, H, Zhang, Y, Wong, K.H, Zhang, X, Chao, W.C.H, He, J. 登録日 2023-08-09 公開日 2023-09-13 最終更新日 2023-10-11 実験手法 ELECTRON MICROSCOPY (2.93 Å) 主引用文献 Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex. Cell Res., 33, 2023
8KD2	Rpd3S in complex with 187bp nucleosome 分子名称: 187bp DNA, Chromatin modification-related protein EAF3, Histone H2A, ... 著者 Dong, S, Li, H, Wang, M, Rasheed, N, Zou, B, Gao, X, Guan, J, Li, W, Zhang, J, Wang, C, Zhou, N, Shi, X, Li, M, Zhou, M, Huang, J, Li, H, Zhang, Y, Wong, K.H, Zhang, X, Chao, W.C.H, He, J. 登録日 2023-08-09 公開日 2023-09-13 最終更新日 2023-10-11 実験手法 ELECTRON MICROSCOPY (3.02 Å) 主引用文献 Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex. Cell Res., 33, 2023
3IYD	Three-dimensional EM structure of an intact activator-dependent transcription initiation complex 分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Catabolite gene activator, DNA (98-MER), ... 著者 Hudson, B.P, Quispe, J, Lara, S, Kim, Y, Berman, H, Arnold, E, Ebright, R.H, Lawson, C.L. 登録日 2009-08-01 公開日 2009-11-10 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (19.799999 Å) 主引用文献 Three-dimensional EM structure of an intact activator-dependent transcription initiation complex Proc.Natl.Acad.Sci.USA, 106, 2009
4USG	Crystal structure of PC4 W89Y mutant complex with DNA 分子名称: 5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP *TP*TP*TP*TP*TP*G)-3', ACTIVATED RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR P15 著者 Zhao, Y, Liu, J. 登録日 2014-07-08 公開日 2015-03-18 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.973 Å) 主引用文献 Substitution of Tryptophan 89 with Tyrosine Switches the DNA Binding Mode of Pc4. Sci.Rep., 5, 2015
7N84	Double nuclear outer ring from the isolated yeast NPC 分子名称: Nucleoporin 145c, Nucleoporin NUP120, Nucleoporin NUP133, ... 著者 Akey, C.W, Rout, M.P, Ouch, C, Echevarria, I, Fernandez-Martinez, J, Nudelman, I. 登録日 2021-06-13 公開日 2022-01-26 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (11.6 Å) 主引用文献 Comprehensive structure and functional adaptations of the yeast nuclear pore complex. Cell, 185, 2022
8U3B	Cryo-EM structure of E. coli NarL-transcription activation complex at 3.2A 分子名称: DNA (69-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Liu, B, Kompaniiets, D, Wang, D. 登録日 2023-09-07 公開日 2024-01-17 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.23 Å) 主引用文献 Structural basis for transcription activation by the nitrate-responsive regulator NarL. Nucleic Acids Res., 52, 2024
5FUR	Structure of human TFIID-IIA bound to core promoter DNA 分子名称: SUPER CORE PROMOTER, TATA-BOX-BINDING PROTEIN, TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1, ... 著者 Louder, R.K, He, Y, Lopez-Blanco, J.R, Fang, J, Chacon, P, Nogales, E. 登録日 2016-01-29 公開日 2016-04-06 最終更新日 2017-08-02 実験手法 ELECTRON MICROSCOPY (8.5 Å) 主引用文献 Structure of Promoter-Bound TFIID and Model of Human Pre-Initiation Complex Assembly. Nature, 531, 2016
1HVU	HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 REVERSE TRANSCRIPTASE COMPLEXED WITH A 33-BASE NUCLEOTIDE RNA PSEUDOKNOT 分子名称: PROTEIN (HIV-1 REVERSE TRANSCRIPTASE), RNA (33 NUCLEOTIDE RNA PSEUDOKNOT) 著者 Jaeger, J, Restle, T, Steitz, T.A. 登録日 1998-06-30 公開日 1999-01-13 最終更新日 2023-08-02 実験手法 X-RAY DIFFRACTION (4.75 Å) 主引用文献 The structure of HIV-1 reverse transcriptase complexed with an RNA pseudoknot inhibitor. EMBO J., 17, 1998
6ERQ	Structure of the human mitochondrial transcription initiation complex at the HSP promoter 分子名称: DNA-directed RNA polymerase, mitochondrial, Dimethyladenosine transferase 2, ... 著者 Hillen, H.S, Morozov, Y.I, Sarfallah, A, Temiakov, D, Cramer, P. 登録日 2017-10-18 公開日 2017-11-15 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (4.5 Å) 主引用文献 Structural Basis of Mitochondrial Transcription Initiation. Cell, 171, 2017
6ERP	Structure of the human mitochondrial transcription initiation complex at the LSP promoter 分子名称: DNA-directed RNA polymerase, mitochondrial, Dimethyladenosine transferase 2, ... 著者 Hillen, H.S, Morozov, Y.I, Sarfallah, A, Temiakov, D, Cramer, P. 登録日 2017-10-18 公開日 2017-11-15 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (4.502 Å) 主引用文献 Structural Basis of Mitochondrial Transcription Initiation. Cell, 171, 2017
8KB5	Cryo-EM structure of the human nucleosome containing H3.8 分子名称: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Hirai, H, Kujirai, T, Takizawa, Y, Kurumizaka, H. 登録日 2023-08-03 公開日 2023-10-18 最終更新日 2023-12-27 実験手法 ELECTRON MICROSCOPY (2.26133 Å) 主引用文献 Cryo-EM and biochemical analyses of the nucleosome containing the human histone H3 variant H3.8. J.Biochem., 174, 2023
8PYR	Crystal structure of the dual T-loop phosphorylated Cdk7/CycH/Mat1 complex 分子名称: 1,2-ETHANEDIOL, CDK-activating kinase assembly factor MAT1, Cyclin-H, ... 著者 Anand, K, Duster, R, Geyer, M. 登録日 2023-07-26 公開日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structural basis of Cdk7 activation by dual T-loop phosphorylation. Biorxiv, 2024
6T9K	SAGA Core module 分子名称: Protein SPT3, SAGA-associated factor 73, Transcription factor SPT20, ... 著者 Wang, H, Cheung, A, Cramer, P. 登録日 2019-10-28 公開日 2020-01-29 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Structure of the transcription coactivator SAGA. Nature, 577, 2020
5ZYA	SF3b spliceosomal complex bound to E7107 分子名称: PHD finger-like domain-containing protein 5A, POTASSIUM ION, Splicing factor 3B subunit 1, ... 著者 Finci, L.I, Larsen, N.A. 登録日 2018-05-23 公開日 2018-06-20 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.95 Å) 主引用文献 The cryo-EM structure of the SF3b spliceosome complex bound to a splicing modulator reveals a pre-mRNA substrate competitive mechanism of action Genes Dev., 32, 2018
5OQL	Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum 分子名称: 35S rRNA, 40S ribosomal protein S1, 40S ribosomal protein S11-like protein, ... 著者 Cheng, J, Kellner, N, Berninghausen, O, Hurt, E, Beckmann, R. 登録日 2017-08-12 公開日 2017-10-11 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 3.2- angstrom -resolution structure of the 90S preribosome before A1 pre-rRNA cleavage. Nat. Struct. Mol. Biol., 24, 2017

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