Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8W7O
DownloadVisualize
BU of 8w7o by Molmil
Fe-O nanocluster of form-V in the 4-fold channel of Ureaplasma diversum ferritin
分子名称: FE (III) ION, Ferritin, MAGNESIUM ION
著者Wang, W.M, Xi, H.F, Gong, W.J, Ma, D.Y, Wang, H.F.
登録日2023-08-31
公開日2024-06-12
実験手法X-RAY DIFFRACTION (2.399 Å)
主引用文献Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
8W7N
DownloadVisualize
BU of 8w7n by Molmil
Crystal structure of the in-cell Cry1Aa purified from Bacillus thuringiensis
分子名称: Pesticidal crystal protein Cry1Aa, UNKNOWN ATOM OR ION
著者Tanaka, J, Abe, S, Hayakawa, T, Kojima, M, Yamashita, K, Hirata, K, Ueno, T.
登録日2023-08-31
公開日2024-03-06
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Crystal structure of the in-cell Cry1Aa purified from Bacillus thuringiensis.
Biochem.Biophys.Res.Commun., 685, 2023
8W7M
DownloadVisualize
BU of 8w7m by Molmil
Yeast replisome in state V
分子名称: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 45, DNA (71-mer), ...
著者Dang, S, Zhai, Y, Feng, J, Yu, D, Xu, Z.
登録日2023-08-30
公開日2023-12-06
実験手法ELECTRON MICROSCOPY (4.12 Å)
主引用文献Synergism between CMG helicase and leading strand DNA polymerase at replication fork.
Nat Commun, 14, 2023
8W7H
DownloadVisualize
BU of 8w7h by Molmil
Purine Nucleoside Phosphorylase in complex with MMV000848
分子名称: (2R)-1-(9H-carbazol-9-yl)-3-(cyclopentylamino)propan-2-ol, 1,2-ETHANEDIOL, PHOSPHATE ION, ...
著者Chung, Z, Lin, J.Q, Lescar, J.
登録日2023-08-30
公開日2024-01-17
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Identification and structural validation of purine nucleoside phosphorylase from Plasmodium falciparum as a target of MMV000848.
J.Biol.Chem., 300, 2023
8W7F
DownloadVisualize
BU of 8w7f by Molmil
Structure of Drosophila melanogaster L-2-hydroxyglutarate dehydrogenase bound with FAD and a sulfate ion
分子名称: DODECYL-BETA-D-MALTOSIDE, FI05204p, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Yang, J, Chen, X, Jin, S, Ding, J.
登録日2023-08-30
公開日2023-11-29
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.299 Å)
主引用文献Structure and biochemical characterization of l-2-hydroxyglutarate dehydrogenase and its role in the pathogenesis of l-2-hydroxyglutaric aciduria.
J.Biol.Chem., 300, 2023
8W7D
DownloadVisualize
BU of 8w7d by Molmil
Crystal structure of EcPPAT-FR901483 complex
分子名称: Amidophosphoribosyltransferase, [(1S,3S,6S,7S,8R,9S)-6-[(4-methoxyphenyl)methyl]-3-(methylamino)-7-oxidanyl-5-azatricyclo[6.3.1.0^1,5]dodecan-9-yl] dihydrogen phosphate
著者Hara, K, Hashimoto, H, Nakahara, M, Sato, M, Watanabe, K.
登録日2023-08-30
公開日2023-12-13
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.81 Å)
主引用文献Uncommon Arrangement of Self-resistance Allows Biosynthesis of de novo Purine Biosynthesis Inhibitor that Acts as an Immunosuppressor.
J.Am.Chem.Soc., 145, 2023
8W7B
DownloadVisualize
BU of 8w7b by Molmil
Fe-O nanocluster of form-IV in the 4-fold channel of Ureaplasma diversum ferritin
分子名称: FE (III) ION, Ferritin
著者Wang, W.M, Xi, H.F, Gong, W.J, Ma, D.Y, Wang, H.F.
登録日2023-08-30
公開日2024-06-12
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
8W79
DownloadVisualize
BU of 8w79 by Molmil
Fe-O nanocluster of form-III in the 4-fold channel of Ureaplasma diversum ferritin
分子名称: FE (III) ION, Ferritin
著者Wang, W.M, Xi, H.F, Gong, W.J, Ma, D.Y, Wang, H.F.
登録日2023-08-30
公開日2024-06-12
実験手法X-RAY DIFFRACTION (2.697 Å)
主引用文献Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
8W78
DownloadVisualize
BU of 8w78 by Molmil
Structure of Drosophila melanogaster L-2-hydroxyglutarate dehydrogenase in complex with FAD and 2-oxoglutarate
分子名称: 2-OXOGLUTARIC ACID, DODECYL-BETA-D-MALTOSIDE, FI05204p, ...
著者Yang, J, Chen, X, Jin, S, Ding, J.
登録日2023-08-30
公開日2023-11-29
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.81 Å)
主引用文献Structure and biochemical characterization of l-2-hydroxyglutarate dehydrogenase and its role in the pathogenesis of l-2-hydroxyglutaric aciduria.
J.Biol.Chem., 300, 2023
8W77
DownloadVisualize
BU of 8w77 by Molmil
Human Consensus Olfactory Receptor OR52c in apo state, OR52c only
分子名称: Human Consensus Olfactory Receptor OR52c in apo state, receptor only,Soluble cytochrome b562
著者Choi, C.W, Bae, J, Choi, H.-J, Kim, J.
登録日2023-08-30
公開日2023-12-20
実験手法ELECTRON MICROSCOPY (3.61 Å)
主引用文献Understanding the molecular mechanisms of odorant binding and activation of the human OR52 family.
Nat Commun, 14, 2023
8W75
DownloadVisualize
BU of 8w75 by Molmil
Structure of Drosophila melanogaster L-2-hydroxyglutarate dehydrogenase
分子名称: DODECYL-BETA-D-MALTOSIDE, FI05204p, FLAVIN-ADENINE DINUCLEOTIDE
著者Yang, J, Chen, X, Jin, S, Ding, J.
登録日2023-08-30
公開日2023-11-29
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Structure and biochemical characterization of l-2-hydroxyglutarate dehydrogenase and its role in the pathogenesis of l-2-hydroxyglutaric aciduria.
J.Biol.Chem., 300, 2023
8W74
DownloadVisualize
BU of 8w74 by Molmil
Fe-O nanocluster of form-II in the 4-fold channel of Ureaplasma diversum ferritin
分子名称: FE (III) ION, Ferritin
著者Wang, W.M, Xi, H.F, Gong, W.J, Ma, D.Y, Wang, H.F.
登録日2023-08-30
公開日2024-06-12
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
8W73
DownloadVisualize
BU of 8w73 by Molmil
Fe-O nanocluster of form-I in the 4-fold channel of Ureaplasma diversum ferritin
分子名称: CHLORIDE ION, FE (III) ION, Ferritin, ...
著者Wang, W.M, Xi, H.F, Gong, W.J, Ma, D.Y, Wang, H.F.
登録日2023-08-30
公開日2024-06-12
実験手法X-RAY DIFFRACTION (2.601 Å)
主引用文献Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
8W72
DownloadVisualize
BU of 8w72 by Molmil
Crystal structure of a P450 enzyme DmlH that catalyze intramolecular phenol coupling in the biosynthesis of cihanmycins
分子名称: Cytochrome P450, PROTOPORPHYRIN IX CONTAINING FE
著者Fang, C, Zhang, L, Zhu, Y, Zhang, C.
登録日2023-08-30
公開日2024-06-12
実験手法X-RAY DIFFRACTION (3.25 Å)
主引用文献Crystal structure of a P450 enzyme DmlH that catalyze intramolecular phenol coupling in the biosynthesis of cihanmycins
To Be Published
8W71
DownloadVisualize
BU of 8w71 by Molmil
Structural basis of chorismate isomerization by Arabidopsis isochorismate synthase ICS1
分子名称: (3R,4R)-3-[(1-carboxyethenyl)oxy]-4-hydroxycyclohexa-1,5-diene-1-carboxylic acid, FORMIC ACID, Isochorismate synthase 1, ...
著者Su, Z.H, Ming, Z.H.
登録日2023-08-30
公開日2024-05-22
実験手法X-RAY DIFFRACTION (2.121 Å)
主引用文献Structural basis of chorismate isomerization by Arabidopsis ISOCHORISMATE SYNTHASE1.
Plant Physiol., 2024
8W6Z
DownloadVisualize
BU of 8w6z by Molmil
Substrate-bound crystal structure of a P450 enzyme DmlH that catalyze intramolecular phenol coupling in the biosynthesis of cihanmycins
分子名称: (E)-3-[2-[(2R,3S)-3-[(1R)-1-aminocarbonyloxypropyl]oxiran-2-yl]phenyl]prop-2-enoic acid, Cytochrome P450, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Fang, C, Zhang, L, Zhu, Y, Zhang, C.
登録日2023-08-30
公開日2024-06-12
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Substrate-bound crystal structure of a P450 enzyme DmlH that catalyze intramolecular phenol coupling in the biosynthesis of cihanmycins
To Be Published
8W6Y
DownloadVisualize
BU of 8w6y by Molmil
Ferritin from Ureaplasma diversum soaking in Fe2+ solution for 10 min
分子名称: FE (III) ION, Ferritin
著者Wang, W.M, Xi, H.F, Gong, W.J, Ma, D.Y, Wang, H.F.
登録日2023-08-30
公開日2024-06-12
実験手法X-RAY DIFFRACTION (2.502 Å)
主引用文献Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
8W6X
DownloadVisualize
BU of 8w6x by Molmil
Neutron structure of [NiFe]-hydrogenase from D. vulgaris Miyazaki F in its oxidized state
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, FE3-S4 CLUSTER, ...
著者Hiromoto, T, Tamada, T.
登録日2023-08-30
公開日2023-09-13
最終更新日2023-11-15
実験手法NEUTRON DIFFRACTION (1.04 Å), X-RAY DIFFRACTION
主引用文献New insights into the oxidation process from neutron and X-ray crystal structures of an O 2 -sensitive [NiFe]-hydrogenase.
Chem Sci, 14, 2023
8W6V
DownloadVisualize
BU of 8w6v by Molmil
Structural basis of chorismate isomerization by Arabidopsis isochorismate synthase ICS1
分子名称: ACETATE ION, FORMIC ACID, Isochorismate synthase 1, ...
著者Su, Z.H, Ming, Z.H.
登録日2023-08-29
公開日2024-05-22
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis of chorismate isomerization by Arabidopsis ISOCHORISMATE SYNTHASE1.
Plant Physiol., 2024
8W6U
DownloadVisualize
BU of 8w6u by Molmil
Ferritin from Ureaplasma diversum soaking in Fe2+ solution for 5 min
分子名称: CHLORIDE ION, FE (III) ION, Ferritin, ...
著者Wang, W.M, Xi, H.F, Gong, W.J, Ma, D.Y, Wang, H.F.
登録日2023-08-29
公開日2024-06-12
実験手法X-RAY DIFFRACTION (2.099 Å)
主引用文献Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
8W6T
DownloadVisualize
BU of 8w6t by Molmil
NaS1 in IN/OUT state
分子名称: Solute carrier family 13 member 1
著者Chi, X, Chen, Y, Li, Y, Zhang, Y, Shen, Y, Chen, Y, Wang, Z, Yan, R.
登録日2023-08-29
公開日2024-04-17
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Cryo-EM structures of the human NaS1 and NaDC1 transporters revealed the elevator transport and allosteric regulation mechanism.
Sci Adv, 10, 2024
8W6S
DownloadVisualize
BU of 8w6s by Molmil
Ferritin from Ureaplasma diversum soaking in Fe2+ solution for 2 min
分子名称: CHLORIDE ION, FE (III) ION, Ferritin, ...
著者Wang, W.M, Xi, H.F, Gong, W.J, Ma, D.Y, Wang, H.F.
登録日2023-08-29
公開日2024-06-12
実験手法X-RAY DIFFRACTION (2.099 Å)
主引用文献Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
8W6R
DownloadVisualize
BU of 8w6r by Molmil
murine SMPDL3A bound to sulfate
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Acid sphingomyelinase-like phosphodiesterase 3a, ...
著者Zhang, C, Liu, P, Fan, S.
登録日2023-08-29
公開日2023-12-20
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献SMPDL3A is a cGAMP-degrading enzyme induced by LXR-mediated lipid metabolism to restrict cGAS-STING DNA sensing.
Immunity, 56, 2023
8W6Q
DownloadVisualize
BU of 8w6q by Molmil
ferritin from Ureaplasma diversum soaking in Fe2+ solution for 0 min
分子名称: CHLORIDE ION, FE (III) ION, Ferritin, ...
著者Wang, W.M, Xi, H.F, Gong, W.J, Ma, D.Y, Wang, H.F.
登録日2023-08-29
公開日2024-06-12
実験手法X-RAY DIFFRACTION (2.101 Å)
主引用文献Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
8W6P
DownloadVisualize
BU of 8w6p by Molmil
Crystal structure of dimeric murine SMPDL3A
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Acid sphingomyelinase-like phosphodiesterase 3a, ...
著者Zhang, C, Liu, P, Fan, S, Hou, Y.
登録日2023-08-29
公開日2023-12-20
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献SMPDL3A is a cGAMP-degrading enzyme induced by LXR-mediated lipid metabolism to restrict cGAS-STING DNA sensing.
Immunity, 56, 2023

222624

件を2024-07-17に公開中

PDB statisticsPDBj update infoContact PDBjnumon