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6U6X
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Human SAMHD1 bound to deoxyribo(C*G*C*C*T)-oligonucleotide
分子名称: DNA SC-GS-SC-SC-DT, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, ZINC ION
著者Taylor, A.B, Bhattacharya, A, Wang, Z, Ivanov, D.N.
登録日2019-08-30
公開日2020-09-02
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.58 Å)
主引用文献Nucleic acid binding by SAMHD1 contributes to the antiretroviral activity and is enhanced by the GpsN modification.
Nat Commun, 12, 2021
5FXI
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GluN1b-GluN2B NMDA receptor structure in non-active-2 conformation
分子名称: N-METHYL-D-ASPARTATE RECEPTOR GLUN1, N-METHYL-D-ASPARTATE RECEPTOR GLUN2B
著者Tajima, N, Karakas, E, Grant, T, Simorowski, N, Diaz-Avalos, R, Grigorieff, N, Furukawa, H.
登録日2016-03-02
公開日2016-05-11
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (6.4 Å)
主引用文献Activation of Nmda Receptors and the Mechanism of Inhibition by Ifenprodil.
Nature, 534, 2016
4TQI
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Human transthyretin (TTR) complexed with 3-(9H-fluoren-9-ylideneaminooxy)propanoic acid in a dual binding mode
分子名称: (2S)-3-[(9H-fluoren-9-ylideneamino)oxy]-2-methylpropanoic acid, GLYCEROL, Transthyretin
著者Stura, E.A, Ciccone, L, Nencetti, S, Rossello, A, Orlandini, E.
登録日2014-06-11
公開日2015-06-24
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献X-ray crystal structure and activity of fluorenyl-based compounds as transthyretin fibrillogenesis inhibitors.
J Enzyme Inhib Med Chem, 2015
2PEL
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BU of 2pel by Molmil
PEANUT LECTIN
分子名称: CALCIUM ION, MANGANESE (II) ION, PEANUT LECTIN, ...
著者Banerjee, R, Das, K, Ravishankar, R, Suguna, K, Surolia, A, Vijayan, M.
登録日1995-08-23
公開日1996-12-07
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Conformation, protein-carbohydrate interactions and a novel subunit association in the refined structure of peanut lectin-lactose complex.
J.Mol.Biol., 259, 1996
6KDV
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BU of 6kdv by Molmil
Crystal structure of TtCas1-DNA complex
分子名称: CRISPR-associated endonuclease Cas1 2, DNA (5'-D(*GP*AP*GP*TP*CP*GP*AP*TP*GP*CP*TP*GP*GP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*CP*CP*AP*GP*CP*AP*TP*CP*GP*AP*CP*TP*C)-3')
著者Wang, Y.L, Li, J.Z, Yang, J, Wang, J.Y.
登録日2019-07-02
公開日2019-12-18
最終更新日2020-05-06
実験手法X-RAY DIFFRACTION (3.11 Å)
主引用文献Crystal structure of Cas1 in complex with branched DNA.
Sci China Life Sci, 63, 2020
5G11
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Pseudomonas aeruginosa HDAH bound to PFSAHA.
分子名称: 2,2,3,3,4,4,5,5,6,6,7,7-dodecakis(fluoranyl)-~{N}-oxidanyl-~{N}'-phenyl-octanediamide, HDAH, POTASSIUM ION, ...
著者Kraemer, A, Meyer-Almes, F.J, Yildiz, O.
登録日2016-03-23
公開日2016-11-30
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.48 Å)
主引用文献Crystal Structure of a Histone Deacetylase Homologue from Pseudomonas aeruginosa.
Biochemistry, 55, 2016
5FJE
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CU(I)-CSP1 (COPPER STORAGE PROTEIN 1) FROM METHYLOSINUS TRICHOSPORIUM OB3B
分子名称: COPPER (I) ION, COPPER STORAGE PROTEIN 1, SODIUM ION
著者Vita, N, Platsaki, S, Basle, A, Allen, S.J, Paterson, N.G, Crombie, A.T, Murrell, J.C, Waldron, K.J, Dennison, C.
登録日2015-10-07
公開日2015-11-18
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A Four-Helix Bundle Stores Copper for Methane Oxidation.
Nature, 525, 2015
6UC1
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Crystal structure of D678A GoxA soaked in glycine at pH 7.5
分子名称: GLYCINE, MAGNESIUM ION, SULFATE ION, ...
著者Yukl, E.T.
登録日2019-09-13
公開日2019-10-23
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.19 Å)
主引用文献Kinetic and structural evidence that Asp-678 plays multiple roles in catalysis by the quinoprotein glycine oxidase.
J.Biol.Chem., 294, 2019
7BZ4
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BU of 7bz4 by Molmil
The mutant variant of PNGM-1. H279 was substituted for alanine to study metal coordination.
分子名称: Metallo-beta-lactamase PNGM-1, ZINC ION
著者Park, Y.S, Kang, L.W, Lee, J.H.
登録日2020-04-26
公開日2021-04-28
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.16 Å)
主引用文献Structural Study of Metal Binding and Coordination in Ancient Metallo-beta-Lactamase PNGM-1 Variants.
Int J Mol Sci, 21, 2020
7BYQ
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BU of 7byq by Molmil
The mutant variant of PNGM-1. H279A was substituted for alanine to study metal coordination.
分子名称: Metallo-beta-lactamase PNGM-1, ZINC ION
著者Park, Y.S, Kang, L.W, Lee, J.H.
登録日2020-04-24
公開日2021-04-28
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Structural Study of Metal Binding and Coordination in Ancient Metallo-beta-Lactamase PNGM-1 Variants.
Int J Mol Sci, 21, 2020
7BZ1
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The mutant variant of PNGM-1. H96 was substituted for alanine to study metal coordination.
分子名称: Metallo-beta-lactamase PNGM-1, ZINC ION
著者Park, Y.S, Kang, L.W, Lee, J.H.
登録日2020-04-26
公開日2021-04-28
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Structural Study of Metal Binding and Coordination in Ancient Metallo-beta-Lactamase PNGM-1 Variants.
Int J Mol Sci, 21, 2020
4U1R
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BU of 4u1r by Molmil
ATP-bound structure of human platelet phosphofructokinase in an R-state, crystal form II
分子名称: ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent 6-phosphofructokinase, platelet type, ...
著者Kloos, M, Straeter, N.
登録日2014-07-16
公開日2015-06-03
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of human platelet phosphofructokinase-1 locked in an activated conformation.
Biochem.J., 469, 2015
7BZI
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BU of 7bzi by Molmil
The mutant variant of PNGM-1. H91 was substituted for alanine to study metal coordination.
分子名称: Metallo-beta-lactamase PNGM-1, ZINC ION
著者Park, Y.S, Kang, L.W, Lee, J.H.
登録日2020-04-28
公開日2021-04-28
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Structural Study of Metal Binding and Coordination in Ancient Metallo-beta-Lactamase PNGM-1 Variants.
Int J Mol Sci, 21, 2020
7BZ3
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BU of 7bz3 by Molmil
The mutant variant of PNGM-1. H257 was substituted for alanine to study substrate binding.
分子名称: Metallo-beta-lactamase PNGM-1, ZINC ION
著者Park, Y.S, Kang, L.W, Lee, J.H.
登録日2020-04-26
公開日2021-04-28
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural Study of Metal Binding and Coordination in Ancient Metallo-beta-Lactamase PNGM-1 Variants.
Int J Mol Sci, 21, 2020
6U6Y
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BU of 6u6y by Molmil
Human SAMHD1 bound to ribo(CGCCU)-oligonucleotide
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, RNA CGCCU, ...
著者Taylor, A.B, Bhattacharya, A, Wang, Z, Ivanov, D.N.
登録日2019-08-30
公開日2020-09-02
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.47 Å)
主引用文献Nucleic acid binding by SAMHD1 contributes to the antiretroviral activity and is enhanced by the GpsN modification.
Nat Commun, 12, 2021
6UIA
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BU of 6uia by Molmil
Structure of ATP citrate lyase with CoA in a partially open conformation
分子名称: ATP-citrate synthase, COENZYME A
著者Wei, X, Marmorstein, R.
登録日2019-09-30
公開日2019-12-25
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献Molecular basis for acetyl-CoA production by ATP-citrate lyase.
Nat.Struct.Mol.Biol., 27, 2020
6UI9
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BU of 6ui9 by Molmil
Structure of human ATP citrate lyase in complex with acetyl-CoA and oxaloacetate
分子名称: ACETYL COENZYME *A, ACLY, OXALOACETATE ION
著者Wei, X, Marmorstein, R.
登録日2019-09-30
公開日2019-12-25
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Molecular basis for acetyl-CoA production by ATP-citrate lyase
Nat.Struct.Mol.Biol., 27, 2020
2EZ1
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BU of 2ez1 by Molmil
Holo tyrosine phenol-lyase from Citrobacter freundii at pH 8.0
分子名称: POTASSIUM ION, Tyrosine phenol-lyase
著者Milic, D, Matkovic-Calogovic, D, Demidkina, T.V, Antson, A.A.
登録日2005-11-10
公開日2006-07-25
最終更新日2017-10-18
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structures of apo- and holo-tyrosine phenol-lyase reveal a catalytically critical closed conformation and suggest a mechanism for activation by K+ ions
Biochemistry, 45, 2006
5FXJ
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BU of 5fxj by Molmil
GluN1b-GluN2B NMDA receptor structure-Class X
分子名称: GLUTAMATE RECEPTOR IONOTROPIC, NMDA 1, NMDA 2B
著者Tajima, N, Karakas, E, Grant, T, Simorowski, N, Diaz-Avalos, R, Grigorieff, N, Furukawa H, H.
登録日2016-03-02
公開日2016-05-25
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (6.25 Å)
主引用文献Activation of Nmda Receptors and the Mechanism of Inhibition by Ifenprodil.
Nature, 534, 2016
5G12
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BU of 5g12 by Molmil
Pseudomonas aeruginosa HDAH (Y313F) unliganded.
分子名称: HDAH, POTASSIUM ION, ZINC ION
著者Kraemer, A, Meyer-Almes, F.J, Yildiz, O.
登録日2016-03-23
公開日2016-12-07
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Crystal Structure of a Histone Deacetylase Homologue from Pseudomonas aeruginosa.
Biochemistry, 55, 2016
1TTA
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BU of 1tta by Molmil
THE X-RAY CRYSTAL STRUCTURE REFINEMENTS OF NORMAL HUMAN TRANSTHYRETIN AND THE AMYLOIDOGENIC VAL30MET VARIANT TO 1.7 ANGSTROMS RESOLUTION
分子名称: TRANSTHYRETIN
著者Hamilton, J.A, Steinrauf, L.K, Braden, B.C.
登録日1992-11-02
公開日1993-10-31
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The x-ray crystal structure refinements of normal human transthyretin and the amyloidogenic Val-30-->Met variant to 1.7-A resolution.
J.Biol.Chem., 268, 1993
5HPZ
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BU of 5hpz by Molmil
type II water soluble Chl binding proteins
分子名称: 13'2-hydroxyl-Chlorophyll a, Water-soluble chlorophyll protein
著者Bednarczyk, D, Dym, O, Prabahard, V, Noy, D.
登録日2016-01-21
公開日2016-05-04
最終更新日2019-05-29
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Fine Tuning of Chlorophyll Spectra by Protein-Induced Ring Deformation.
Angew.Chem.Int.Ed.Engl., 55, 2016
2D1Y
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BU of 2d1y by Molmil
Crystal structure of TT0321 from Thermus thermophilus HB8
分子名称: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, hypothetical protein TT0321
著者Asada, Y, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-09-02
公開日2006-03-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Biochemical and structural characterization of a short-chain dehydrogenase/reductase of Thermus thermophilus HB8: a hyperthermostable aldose-1-dehydrogenase with broad substrate specificity.
Chem.Biol.Interact., 178, 2009
6IXJ
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BU of 6ixj by Molmil
The crystal structure of sulfoacetaldehyde reductase from Klebsiella oxytoca
分子名称: 2-hydroxyethylsulfonic acid, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Sulfoacetaldehyde reductase
著者Zhou, Y, Xu, T, Lin, L, Zhang, Y, Yuchi, Z.
登録日2018-12-10
公開日2019-02-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Biochemical and structural investigation of sulfoacetaldehyde reductase fromKlebsiella oxytoca.
Biochem. J., 476, 2019
6KXZ
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HUMAN PARALLEL STRANDED 7-MER G-QUADRUPLEX COMPLEXED WITH 2 EPIRUBICIN (EPI) MOLECULES
分子名称: 4'-EPIDOXORUBICIN, [TTAGGGT]4-EPI-Complex
著者Barthwal, R, Raje, S, Pandav, K.
登録日2019-09-15
公開日2020-09-16
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural basis for stabilization of human telomeric G-quadruplex [d-(TTAGGGT)] 4 by anticancer drug epirubicin.
Bioorg.Med.Chem., 28, 2020

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