PDB: 8880 件ウェブページステータス検索Chemie searchBIRD

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6DU3	Structure of Scp1 D96N bound to REST-pS861/4 peptide 分子名称: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, MAGNESIUM ION, REST-pS861 著者 Burkholder, N.T, Mayfield, J.E, Yu, X, Irani, S, Arce, D.K, Jiang, F, Matthews, W, Xue, Y, Zhang, Y.J. 登録日 2018-06-19 公開日 2018-09-26 最終更新日 2020-01-01 実験手法 X-RAY DIFFRACTION (2.58 Å) 主引用文献 Phosphatase activity of small C-terminal domain phosphatase 1 (SCP1) controls the stability of the key neuronal regulator RE1-silencing transcription factor (REST). J. Biol. Chem., 293, 2018
6DU2	Structure of Scp1 D96N bound to REST-pS861/4 peptide 分子名称: MAGNESIUM ION, REST-pS861/4, carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 著者 Burkholder, N.T, Mayfield, J.E, Yu, X, Irani, S, Arce, D.K, Jiang, F, Matthews, W, Xue, Y, Zhang, Y.J. 登録日 2018-06-19 公開日 2018-09-26 最終更新日 2020-01-01 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Phosphatase activity of small C-terminal domain phosphatase 1 (SCP1) controls the stability of the key neuronal regulator RE1-silencing transcription factor (REST). J. Biol. Chem., 293, 2018
6MTC	Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state) 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... 著者 Brown, A, Baird, M.R, Yip, M.C.J, Murray, J, Shao, S. 登録日 2018-10-19 公開日 2018-11-21 最終更新日 2019-05-15 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structures of translationally inactive mammalian ribosomes. Elife, 7, 2018
8J8Q	Structure of the four-component Paf1 complex from Saccharomyces eubayanus 分子名称: CDC73-like protein, CTR9-like protein, PAF1-like protein, ... 著者 Wang, Z, Qin, Y, Zhou, Y, Cao, Y. 登録日 2023-05-02 公開日 2023-05-24 最終更新日 2023-06-14 実験手法 X-RAY DIFFRACTION (3.11 Å) 主引用文献 Structural Basis of the Transcriptional Elongation Factor Paf1 Core Complex from Saccharomyces eubayanus . Int J Mol Sci, 24, 2023
8J8P	Structure of the four-component Paf1 complex from Saccharomyces eubayanus 分子名称: CDC73-like protein, CTR9-like protein, PAF1-like protein, ... 著者 Wang, Z, Qin, Y, Zhou, Y, Cao, Y. 登録日 2023-05-02 公開日 2023-05-24 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural Basis of the Transcriptional Elongation Factor Paf1 Core Complex from Saccharomyces eubayanus . Int J Mol Sci, 24, 2023
6WMU	E. coli RNAPs70-SspA-gadA DNA complex 分子名称: DNA NT-strand, DNA NT-strand downstream, DNA T-strand, ... 著者 Travis, B.A, Brennan, R.G, Schumacher, M.A. 登録日 2020-04-21 公開日 2020-11-11 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.18 Å) 主引用文献 Structural Basis for Virulence Activation of Francisella tularensis. Mol.Cell, 81, 2021
5EFQ	Crystal structure of human Cdk13/Cyclin K in complex with ADP-aluminum fluoride 分子名称: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, Cyclin-K, ... 著者 Hoenig, D, Greifenberg, A.K, Anand, K, Geyer, M. 登録日 2015-10-24 公開日 2015-12-30 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural and Functional Analysis of the Cdk13/Cyclin K Complex. Cell Rep, 14, 2016
6H25	Human nuclear RNA exosome EXO-10-MPP6 complex 分子名称: Exosome complex component CSL4, Exosome complex component MTR3, Exosome complex component RRP4, ... 著者 Gerlach, P, Schuller, J.M, Falk, S, Basquin, J, Conti, E. 登録日 2018-07-13 公開日 2018-08-15 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Distinct and evolutionary conserved structural features of the human nuclear exosome complex. Elife, 7, 2018
5BUD	Crystal structure of Candida albicans Rai1 in complex with pU5-Mn2+ 分子名称: Decapping nuclease RAI1, MANGANESE (II) ION, RNA (5'-R(P*UP*UP*UP*U)-3') 著者 Wang, V.Y, Tong, L. 登録日 2015-06-03 公開日 2015-07-08 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.99 Å) 主引用文献 Structural and biochemical studies of the distinct activity profiles of Rai1 enzymes. Nucleic Acids Res., 43, 2015
7ABZ	Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Guyomar, C, D'Urso, G, Chat, S, Giudice, E, Gillet, R. 登録日 2020-09-09 公開日 2021-08-18 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.21 Å) 主引用文献 Structures of tmRNA and SmpB as they transit through the ribosome. Nat Commun, 12, 2021
6TBM	Structure of SAGA bound to TBP, including Spt8 and DUB 分子名称: Polyubiquitin-B, SAGA-associated factor 11, Spt20, ... 著者 Papai, G, Frechard, A, Kolesnikova, O, Crucifix, C, Schultz, P, Ben-Shem, A. 登録日 2019-11-01 公開日 2020-02-12 最終更新日 2024-09-25 実験手法 ELECTRON MICROSCOPY (20 Å) 主引用文献 Structure of SAGA and mechanism of TBP deposition on gene promoters. Nature, 577, 2020
4X6Q	An Isoform-specific Myristylation Switch Targets RIIb PKA Holoenzymes to Membranes 分子名称: cAMP-dependent protein kinase catalytic subunit alpha, cAMP-dependent protein kinase type II-beta regulatory subunit 著者 Zhang, P, Ye, F, Bastidas, A.C, Kornev, A.P, Ginsberg, M.H, Taylor, S.S. 登録日 2014-12-08 公開日 2015-07-22 最終更新日 2019-12-25 実験手法 X-RAY DIFFRACTION (2.52 Å) 主引用文献 An Isoform-Specific Myristylation Switch Targets Type II PKA Holoenzymes to Membranes. Structure, 23, 2015
6HCJ	Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ... 著者 Juszkiewicz, S, Chandrasekaran, V, Lin, Z, Kraatz, S, Ramakrishnan, V, Hegde, R.S. 登録日 2018-08-15 公開日 2018-10-17 最終更新日 2024-10-09 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 ZNF598 Is a Quality Control Sensor of Collided Ribosomes. Mol. Cell, 72, 2018
6IP5	Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii) 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... 著者 Yokoyama, T, Shigematsu, H, Shirouzu, M, Imataka, H, Ito, T. 登録日 2018-11-02 公開日 2019-05-29 最終更新日 2019-11-06 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 HCV IRES Captures an Actively Translating 80S Ribosome. Mol.Cell, 74, 2019
6ZUO	Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage) 分子名称: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, ... 著者 Plassart, L, Shayan, R, Plisson-Chastang, C. 登録日 2020-07-23 公開日 2021-05-12 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 The final step of 40S ribosomal subunit maturation is controlled by a dual key lock. Elife, 10, 2021
6HCF	Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ... 著者 Juszkiewicz, S, Chandrasekaran, V, Lin, Z, Kraatz, S, Ramakrishnan, V, Hegde, R.S. 登録日 2018-08-14 公開日 2018-10-17 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 ZNF598 Is a Quality Control Sensor of Collided Ribosomes. Mol. Cell, 72, 2018
6ZV6	Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage) 分子名称: 18S ribosomal RNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ... 著者 Plassart, L, Shayan, R, Plisson-Chastang, C. 登録日 2020-07-24 公開日 2021-05-12 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 The final step of 40S ribosomal subunit maturation is controlled by a dual key lock. Elife, 10, 2021
8K82	Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA 分子名称: 18S rRNA, 23S rRNA, 40S ribosomal protein S1-A, ... 著者 Buschauer, R, Beckmann, R, Cheng, J. 登録日 2023-07-28 公開日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural basis for differential inhibition of eukaryotic ribosomes by tigecycline. Nat Commun, 15, 2024
8HU1	E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Akiyama, N, Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T. 登録日 2022-12-22 公開日 2024-04-03 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (2.69 Å) 主引用文献 Structural insights into the decoding capability of isoleucine tRNAs with lysidine and agmatidine. Nat.Struct.Mol.Biol., 31, 2024
8HTZ	E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Akiyama, N, Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T. 登録日 2022-12-22 公開日 2024-04-03 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (2.4 Å) 主引用文献 Structural insights into the decoding capability of isoleucine tRNAs with lysidine and agmatidine. Nat.Struct.Mol.Biol., 31, 2024
8HSP	E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Akiyama, N, Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T. 登録日 2022-12-20 公開日 2024-04-03 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (2.32 Å) 主引用文献 Structural insights into the decoding capability of isoleucine tRNAs with lysidine and agmatidine. Nat.Struct.Mol.Biol., 31, 2024
6ONJ	Crystal structure of PPARgamma ligand binding domain in complex with TRAP220 peptide and agonist rosiglitazone 分子名称: 2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL), Mediator of RNA polymerase II transcription subunit 1, ... 著者 Shang, J, Kojetin, D.J. 登録日 2019-04-22 公開日 2020-03-04 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 A molecular switch regulating transcriptional repression and activation of PPAR gamma. Nat Commun, 11, 2020
7YPA	Cryo-EM structure of Escherichia coli hairpin-nucleation complex of transcription termination (TTC-hairpin) 分子名称: DNA (31-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 You, L.L, Zhang, Y. 登録日 2022-08-03 公開日 2022-11-16 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (3.05 Å) 主引用文献 Structural basis for intrinsic transcription termination. Nature, 613, 2023
5E17	T. thermophilus transcription initiation complex having a RRR discriminator sequence and a nontemplate-strand length corresponding to TSS selection at position 7 (RPo-GGG-7) 分子名称: DNA (27-MER), DNA (5'-D(*CP*CP*T*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*GP*G)-3'), DNA-directed RNA polymerase subunit alpha, ... 著者 Zhang, Y, Ebright, R.H. 登録日 2015-09-29 公開日 2016-03-09 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Multiplexed protein-DNA cross-linking: Scrunching in transcription start site selection. Science, 351, 2016
6RXX	Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state C, Poly-Ala 分子名称: 35S ribosomal RNA, 40S ribosomal protein S1, 40S ribosomal protein S11-like protein, ... 著者 Cheng, J, Kellner, N, Griesel, S, Berninghausen, O, Beckmann, R, Hurt, E. 登録日 2019-06-10 公開日 2019-08-14 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (7.1 Å) 主引用文献 Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration. Mol.Cell, 75, 2019

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