PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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3LJ5	Full Length Bacteriophage P22 Portal Protein 分子名称: Portal protein 著者 Olia, A.S, Cingolani, G. 登録日 2010-01-25 公開日 2011-04-20 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (7.497 Å) 主引用文献 Three-dimensional structure of a viral genome-delivery portal vertex. Nat.Struct.Mol.Biol., 18, 2011
7BFS	deoxyxylose nucleic acid hairpin 分子名称: DNA (5'-D(*AP*GP*CP*AP*AP*TP*CP*CP*(XC)P*(XC)P*(XC)P*(XC)P*GP*GP*AP*TP*TP*GP*CP*T)-3') 著者 Mattelaer, C.-A, Mohitosh, M, Smets, L, Maiti, M, Schepers, G, Mattelaer, H.-P, Rosemeyer, H, Herdewijn, P, Lescrinier, E. 登録日 2021-01-04 公開日 2021-01-27 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Stable Hairpin Structures Formed by Xylose-Based Nucleic Acids. Chembiochem, 22, 2021
6TC8	2'-F-arabinoguanosine and 2'-F-riboguanosine modified hybrid type G-quadruplex with V-loop 分子名称: DNA (5'-D(*GP*GP*GP*AP*TP*GP*GP*GP*AP*CP*AP*CP*AP*(GFL)P*(GF2)P*GP*GP*AP*CP*GP*GP*G)-3') 著者 Haase, L, Weisz, K. 登録日 2019-11-05 公開日 2020-03-25 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Switching the type of V-loop in sugar-modified G-quadruplexes through altered fluorine interactions. Chem.Commun.(Camb.), 56, 2020
6TCG	2'-F-riboguanosine and 2'-F-arabinoguanosine modified G-quadruplex with V-loop and all-syn G-tract 分子名称: DNA (5'-D(*GP*GP*GP*AP*TP*GP*GP*GP*AP*CP*AP*CP*AP*(GF2)P*(GFL)P*GP*GP*AP*CP*GP*GP*G)-3') 著者 Haase, L, Weisz, K. 登録日 2019-11-06 公開日 2020-03-25 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Switching the type of V-loop in sugar-modified G-quadruplexes through altered fluorine interactions. Chem.Commun.(Camb.), 56, 2020
6ZTE	Structure of a parallel c-myc modified with 5' duplex stem-loop and 3' diagonal snap-back loop 分子名称: DNA (36-MER) 著者 Vianney, Y.M, Weisz, K. 登録日 2020-07-20 公開日 2020-10-07 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Quadruplex-Duplex Junction: A High-Affinity Binding Site for Indoloquinoline Ligands. Chemistry, 26, 2020
3PD7	Crystal Structure of the Sixth BRCT Domain of Human TopBP1 分子名称: DNA topoisomerase 2-binding protein 1 著者 Lee, J, Xu, C, Cui, G, Thompson, J.R, Mer, G. 登録日 2010-10-22 公開日 2010-12-08 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.26 Å) 主引用文献 Crystal Structure of the Sixth BRCT Domain of Human TopBP1 To be Published
2M4P	Solution structure of an intramolecular propeller-type G-quadruplex containing a single bulge 分子名称: DNA (5'-D(*TP*TP*GP*TP*GP*GP*TP*GP*GP*GP*TP*GP*GP*GP*TP*GP*GP*GP*T)-3') 著者 Mukundan, V.T, Phan, A.T. 登録日 2013-02-08 公開日 2013-06-19 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Bulges in G-Quadruplexes: Broadening the Definition of G-Quadruplex-Forming Sequences. J.Am.Chem.Soc., 135, 2013
8RZX	Solution structure of a parallel stranded G-quadruplex formed in ORAI1 promoter 分子名称: DNA (5'-D(*TP*GP*GP*GP*CP*GP*GP*GP*GP*CP*AP*CP*AP*GP*GP*TP*GP*GP*GP*CP*GP*GP*GP*G)-3') 著者 Jana, J, Weisz, K. 登録日 2024-02-13 公開日 2024-08-21 実験手法 SOLUTION NMR 主引用文献 Remodeling Ca2+ dynamics by targeting a promising E-box containing G-quadruplex at ORAI1 promoter in triple-negative breast cancer Cell Calcium, 2024
7TXJ	Cryo-EM of AFV6 分子名称: DNA (5'-D(*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*TP*A)-3'), MCP1, MCP2 著者 Wang, F, Cvirkaite-Krupovic, V, Krupovic, M, Egelman, E.H. 登録日 2022-02-09 公開日 2022-06-01 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Cryo-EM of AFV6 To Be Published
6EBB	Crystal Structure of YycF homologue, crystals grown in Tris buffer 分子名称: DNA-binding response regulator 著者 Riboldi-Tunnicliffe, A, Panjikar, S, Williamson, R.M, Gabrielsen, M. 登録日 2018-08-06 公開日 2019-08-14 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.022 Å) 主引用文献 Crystal Structure of YycF homologue, crystals grown in Tris buffer To Be Published
4HQH	Decamer Fluoro Carbocyclic LNA (R-F-cLNA) crystal structure 分子名称: DNA (5'-D(*GP*CP*GP*TP*AP*(ULF)P*AP*CP*GP*C)-3') 著者 Seth, P.P, Pallan, P.S, Swayze, E.E, Egli, M. 登録日 2012-10-25 公開日 2013-11-20 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Properties of a Fluorinated Carbocyclic LNA Analog To be Published
2LBY	G-quadruplex structure formed at the 5'-end of NHEIII_1 element in human c-MYC promoter 分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*AP*GP*GP*GP*TP*AP*GP*GP*GP*AP*GP*GP*GP*T)-3') 著者 Mathad, R, Hatzakis, E, Yang, D. 登録日 2011-04-07 公開日 2012-02-22 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 c-MYC promoter G-quadruplex formed at the 5'-end of NHE III1 element: insights into biological relevance and parallel-stranded G-quadruplex stability. Nucleic Acids Res., 39, 2011
2LPW	human CEB25 minisatellite G-quadruplex 分子名称: DNA (26-MER) 著者 Amrane, S, Adrian, M, Heddi, B, Serero, A, Nicolas, A, Mergny, J.L, Phan, A.T. 登録日 2012-02-20 公開日 2012-03-07 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Formation of Pearl-Necklace Monomorphic G-Quadruplexes in the Human CEB25 Minisatellite. J.Am.Chem.Soc., 134, 2012
1WRJ	Crystal structure of O6-methylguanine methyltransferase from Sulfolobus tokodaii 分子名称: Methylated-DNA--protein-cysteine methyltransferase 著者 Kuroda, M, Tsunoda, M, Nakamura, K.T. 登録日 2004-10-18 公開日 2005-12-06 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of O6-methylguanine methyltransferase from Sulfolobus tokodaii To be Published
5EV3	Structure III of Intact U2AF65 Recognizing the 3' Splice Site Signal 分子名称: DNA/RNA (5'-R(P*UP*U)-D(P*U)-R(P*UP*U)-D(P*(BRU)P*UP*U)-3'), Splicing factor U2AF 65 kDa subunit 著者 Agrawal, A.A, Jenkins, J.L, Kielkopf, C.L. 登録日 2015-11-19 公開日 2016-02-24 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 An extended U2AF(65)-RNA-binding domain recognizes the 3' splice site signal. Nat Commun, 7, 2016
5EV4	Structure IV of Intact U2AF65 Recognizing the 3' Splice Site Signal 分子名称: DNA/RNA (5'-R(P*UP*UP*UP*(UD)P*UP*U)-D(P*(BRU)P*(UD))-R(P*C)-3'), GLYCEROL, Splicing factor U2AF 65 kDa subunit 著者 Agrawal, A.A, Jenkins, J.L, Kielkopf, C.L. 登録日 2015-11-19 公開日 2016-02-24 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.57 Å) 主引用文献 An extended U2AF(65)-RNA-binding domain recognizes the 3' splice site signal. Nat Commun, 7, 2016
6GH0	Two-quartet kit* G-quadruplex is formed via double-stranded pre-folded structure 分子名称: DNA (5'-D(*GP*GP*CP*GP*AP*GP*GP*AP*GP*GP*GP*GP*CP*GP*TP*GP*GP*CP*CP*GP*GP*C)-3') 著者 Kotar, A, Rigo, R, Sissi, C, Plavec, J. 登録日 2018-05-04 公開日 2019-01-09 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Two-quartet kit* G-quadruplex is formed via double-stranded pre-folded structure. Nucleic Acids Res., 47, 2019
4Z97	Crystal structure of USP7 in complex with DNMT1(K1115Q) 分子名称: DNA (cytosine-5)-methyltransferase 1, GLYCEROL, Ubiquitin carboxyl-terminal hydrolase 7 著者 Zhang, Z.M, Song, J. 登録日 2015-04-09 公開日 2016-10-12 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.998 Å) 主引用文献 Crystal structure of USP7 in complex with DNMT1(K1115Q) To Be Published
4Z96	Crystal structure of DNMT1 in complex with USP7 分子名称: DNA (cytosine-5)-methyltransferase 1, Ubiquitin carboxyl-terminal hydrolase 7 著者 Zhang, Z.M, Song, J. 登録日 2015-04-09 公開日 2016-10-12 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 Crystal structure of DNMT1 in complex with USP7 To Be Published
5WLZ	Crystal Structure of Amino Acids 1677-1758 of Human Beta Cardiac Myosin Fused to Xrcc4 分子名称: DNA repair protein XRCC4,Myosin-7 著者 Andreas, M.P, Ajay, G, Gellings, J, Rayment, I. 登録日 2017-07-28 公開日 2017-08-23 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Design considerations in coiled-coil fusion constructs for the structural determination of a problematic region of the human cardiac myosin rod. J. Struct. Biol., 200, 2017
246D	STRUCTURE OF THE PURINE-PYRIMIDINE ALTERNATING RNA DOUBLE HELIX, R(GUAUAUA)D(C) , WITH A 3'-TERMINAL DEOXY RESIDUE 分子名称: DNA/RNA (5'-R(*GP*UP*AP*UP*AP*UP*AP*)-D(*C)-3'), SODIUM ION 著者 Wahl, M.C, Ban, C, Sekharudu, C, Ramakrishnan, B, Sundaralingam, M. 登録日 1996-01-25 公開日 1996-08-26 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structure of the purine-pyrimidine alternating RNA double helix, r(GUAUAUA)d(C), with a 3'-terminal deoxy residue. Acta Crystallogr.,Sect.D, 52, 1996
247D	CRYSTAL STRUCTURES OF AN A-FORM DUPLEX WITH SINGLE-ADENOSINE BULGES AND A CONFORMATIONAL BASIS FOR SITE SPECIFIC RNA SELF-CLEAVAGE 分子名称: DNA/RNA (5'-R(*GP*CP*GP*)-D(*AP*TP*AP*TP*AP*)-R(*CP*GP*C)-3') 著者 Portmann, S, Grimm, S, Workman, C, Usman, N, Egli, M. 登録日 1996-02-02 公開日 1996-03-08 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal structures of an A-form duplex with single-adenosine bulges and a conformational basis for site-specific RNA self-cleavage. Chem.Biol., 3, 1996
248D	CRYSTAL STRUCTURES OF AN A-FORM DUPLEX WITH SINGLE-ADENOSINE BULGES AND A CONFORMATIONAL BASIS FOR SITE SPECIFIC RNA SELF-CLEAVAGE 分子名称: DNA/RNA (5'-R(*GP*CP*GP*)-D(*AP*TP*AP*TP*AP*)-R(*CP*GP*C)-3'), ORTHORHOMBIC, SPERMINE 著者 Portmann, S, Grimm, S, Workman, C, Usman, N, Egli, M. 登録日 1996-02-02 公開日 1996-03-08 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.83 Å) 主引用文献 Crystal structures of an A-form duplex with single-adenosine bulges and a conformational basis for site-specific RNA self-cleavage. Chem.Biol., 3, 1996
143D	SOLUTION STRUCTURE OF THE HUMAN TELOMERIC REPEAT D(AG3[T2AG3]3) OF THE G-QUADRUPLEX 分子名称: DNA (5'-D(*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3') 著者 Wang, Y, Patel, D.J. 登録日 1993-10-08 公開日 1994-04-30 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex. Structure, 1, 1993
3NKB	A 1.9A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage 分子名称: DNA/RNA (5'-D(*(DUR))-D(*GP*G)-R(P*CP*UP*UP*GP*CP*A)-3'), MAGNESIUM ION, The hepatitis delta virus ribozyme 著者 Chen, J.-H, Yajima, R, Chadalavada, D.M, Chase, E, Bevilacqua, P.C, Golden, B.L. 登録日 2010-06-18 公開日 2010-09-01 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.916 Å) 主引用文献 A 1.9 A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage. Biochemistry, 49, 2010

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