PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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2LSC	Solution structure of 2'F-ANA and ANA self-complementary duplex 分子名称: DNA (5'-D(*(CFL)P*(GFL)P*(CFL)P*(GFL)P*(A5O)P*(A5O)P*(UAR)P*(UAR)P*(CFL)P*(GFL)P*(CFL)P*(GFL))-3') 著者 Martin-Pintado, N, Yahyaee, M, Campos, R, Noronha, A, Wilds, C, Damha, M, Gonzalez, C. 登録日 2012-04-26 公開日 2012-07-18 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 The solution structure of double helical arabino nucleic acids (ANA and 2'F-ANA): effect of arabinoses in duplex-hairpin interconversion. Nucleic Acids Res., 40, 2012
1B5K	3,N4-ETHENO-2'-DEOXYCYTIDINE OPPOSITE THYMIDINE IN AN 11-MER DUPLEX, SOLUTION STRUCTURE FROM NMR AND MOLECULAR DYNAMICS 分子名称: DNA (5'-D(*CP*GP*TP*AP*CP*EDCP*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*TP*GP*TP*AP*CP*G)-3') 著者 Cullinan, D, Korobka, A, Grollman, A.P, Patel, D.J, Eisenberg, M, De Santos, C.L. 登録日 1999-01-07 公開日 1999-01-13 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 NMR solution structure of an oligodeoxynucleotide duplex containing the exocyclic lesion 3,N4-etheno-2'-deoxycytidine opposite thymidine: comparison with the duplex containing deoxyadenosine opposite the adduct. Biochemistry, 35, 1996
5YEG	Crystal structure of CTCF ZFs4-8-Hs5-1a complex 分子名称: DNA (5'-D(*AP*CP*TP*TP*TP*AP*AP*CP*CP*AP*GP*CP*AP*GP*AP*GP*GP*GP*CP*G)-3'), DNA (5'-D(*TP*CP*GP*CP*CP*CP*TP*CP*TP*GP*CP*TP*GP*GP*TP*TP*AP*AP*AP*G)-3'), Transcriptional repressor CTCF, ... 著者 Yin, M, Wang, J, Wang, M, Li, X. 登録日 2017-09-17 公開日 2017-11-29 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Molecular mechanism of directional CTCF recognition of a diverse range of genomic sites Cell Res., 27, 2017
2N9Q	Photoswitchable G-quadruplex 分子名称: DNA (5'-D(*GP*GP*(AZW)P*GP*G)-3'), POTASSIUM ION 著者 Thevarpadam, J, Bessi, I, Binas, O, Goncalves, D.P.N, Slavov, C, Jonker, H.R.A, Richter, C, Wachtveitl, J, Schwalbe, H, Heckel, A. 登録日 2015-12-02 公開日 2016-02-17 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Photoresponsive Formation of an Intermolecular Minimal G-Quadruplex Motif. Angew.Chem.Int.Ed.Engl., 55, 2016
4B3G	crystal structure of Ighmbp2 helicase in complex with RNA 分子名称: DNA-BINDING PROTEIN SMUBP-2, RNA (5'-(AP*AP*AP*AP*AP*AP*AP*AP*AP)-3') 著者 Lim, S.C, Song, H. 登録日 2012-07-24 公開日 2012-09-26 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 The Ighmbp2 Helicase Structure Reveals the Molecular Basis for Disease-Causing Mutations in Dmsa1. Nucleic Acids Res., 40, 2012
7BWD	Structure of Dot1L-H2BK34ub Nucleosome Complex 分子名称: DNA (146-MER), Histone H2A type 1-B/E, Histone H2B type 1-K, ... 著者 Lou, Z.Y, Liu, L, Cao, L, Ai, H.S, Sun, Z.X. 登録日 2020-04-14 公開日 2021-04-14 実験手法 ELECTRON MICROSCOPY (4.32 Å) 主引用文献 Structure of the Dot1L-H2BK34ub Nucleosome Complex Reveals an Unprecedented Crosstalk Activation Mechanism through Nucleosome Shape Distortion To Be Published
4B3F	crystal structure of Ighmbp2 helicase 分子名称: DNA-BINDING PROTEIN SMUBP-2, PHOSPHATE ION 著者 Lim, S.C, Song, H. 登録日 2012-07-24 公開日 2012-09-26 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 The Ighmbp2 Helicase Structure Reveals the Molecular Basis for Disease-Causing Mutations in Dmsa1. Nucleic Acids Res., 40, 2012
1WI3	Solution structure of the homeodomain of KIAA1034 protein 分子名称: DNA-binding protein SATB2 著者 Izumi, K, Yoshida, M, Hayashi, F, Hatta, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2004-05-28 公開日 2004-11-28 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structure of the homeodomain of KIAA1034 protein TO BE PUBLISHED
1NR3	SOLUTION STRUCTURE OF THE PROTEIN MTH0916: THE NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TT212 分子名称: DNA-binding protein tfx 著者 Shen, Y, Liu, G, Bhaskaran, R, Yee, A, Arrowsmith, C, Szyperski, T, Northeast Structural Genomics Consortium (NESG) 登録日 2003-01-23 公開日 2003-06-10 最終更新日 2024-05-08 実験手法 SOLUTION NMR 主引用文献 SOLUTION STRUCTURE OF THE PROTEIN MTH0916: THE NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TT212 To be Published
3PGW	Crystal structure of human U1 snRNP 分子名称: DNA 5'-D(*AP*GP*GP*TP*AP*AP*GP*TP*A)-3', Sm B, Sm G, ... 著者 Weber, G, Trowitzsch, S, Kastner, B, Luehrmann, R, Wahl, M.C. 登録日 2010-11-02 公開日 2010-12-29 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (4.4 Å) 主引用文献 Functional organization of the Sm core in the crystal structure of human U1 snRNP. Embo J., 29, 2010
3TCI	Crystal structure of the decameric sequence d(CGGGCGCCCG) as Z type duplex 分子名称: DNA (5'-D(P*CP*GP*GP*GP*CP*GP*CP*CP*CP*G)-3') 著者 Venkadesh, S, Mandal, P.K, Gautham, N. 登録日 2011-08-09 公開日 2011-10-05 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.421 Å) 主引用文献 Crystal structure of the decameric sequence d(CGGGCGCCCG) as Z type duplex To be Published
3LPX	Crystal structure of GyrA 分子名称: DNA gyrase, A subunit 著者 Jung, H.Y, Heo, Y.S. 登録日 2010-02-07 公開日 2011-02-16 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal structure of GyrA To be Published
3TU4	Crystal structure of the Sir3 BAH domain in complex with a nucleosome core particle. 分子名称: DNA (146-MER), Histone H2A, Histone H2B 1.1, ... 著者 Armache, K.-J, Garlick, J.D, Canzio, D, Narlikar, G.J, Kingston, R.E. 登録日 2011-09-15 公開日 2011-11-23 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural basis of silencing: Sir3 BAH domain in complex with a nucleosome at 3.0 A resolution. Science, 334, 2011
6XLX	Crystal structure of cancer-associated G301D mutant of U2AF65 bound to AdML splice site 分子名称: DNA/RNA (5'-R(P*UP*UP*(UD)P*UP*U)-D(P*(BRU))-R(P*CP*C)-3'), Splicing factor U2AF 65 kDa subunit 著者 Maji, D, Jenkins, J.L, Kielkopf, C.L. 登録日 2020-06-29 公開日 2020-10-07 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Representative cancer-associated U2AF2 mutations alter RNA interactions and splicing. J.Biol.Chem., 295, 2020
5LM5	Structure of C-terminal domain from S. cerevisiae Pat1 decapping activator bound to Dcp2 HLM2 peptide (region 435-451) 分子名称: DNA topoisomerase 2-associated protein PAT1, mRNA decapping protein 2 著者 Charenton, C, Gaudon-Plesse, C, Fourati, Z, Taverniti, V, Back, R, Kolesnikova, O, Seraphin, B, Graille, M. 登録日 2016-07-29 公開日 2017-08-16 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 A unique surface on Pat1 C-terminal domain directly interacts with Dcp2 decapping enzyme and Xrn1 5'-3' mRNA exonuclease in yeast. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6OQM	crystal structure of the MSH6 PWWP domain 分子名称: DNA mismatch repair protein Msh6, MAGNESIUM ION, SULFATE ION, ... 著者 Qin, S, Tempel, W, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium, Structural Genomics Consortium (SGC) 登録日 2019-04-26 公開日 2019-05-29 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 crystal structure of the MSH6 PWWP domain To Be Published
8PSE	(3+1) hybrid G-quadruplex from a G-rich sequence with five G-runs 分子名称: DNA (5'-D(*AP*GP*GP*GP*TP*AP*GP*GP*GP*CP*GP*GP*CP*GP*(BG)P*GP*TP*AP*CP*GP*GP*GP*T)-3') 著者 Jana, J, Vianney, Y.M, Schroder, N, Weisz, K. 登録日 2023-07-13 公開日 2023-09-27 最終更新日 2023-10-18 実験手法 SOLUTION NMR 主引用文献 Showcasing Different G-Quadruplex Folds of a G-Rich Sequence: Between Rule-Based Prediction and Butterfly Effect. J.Am.Chem.Soc., 145, 2023
8Q7D	Neck of phage 812 after tail contraction (C12) 分子名称: DNA forward strand (120-MER), DNA reverse strand (120-MER), Portal protein, ... 著者 Cienikova, Z, Siborova, M, Fuzik, T, Plevka, P. 登録日 2023-08-16 公開日 2024-08-28 実験手法 ELECTRON MICROSCOPY (3.07 Å) 主引用文献 Genome anchoring, retention, and release by neck proteins of Herelleviridae phage 812 To Be Published
6XLV	Crystal structure of leukemia-associated N196K mutant of U2AF65 bound to AdML splice site 分子名称: DNA/RNA (5'-R(P*UP*UP*(UD)P*UP*U)-D(P*(BRU))-R(P*CP*C)-3'), Splicing factor U2AF 65 kDa subunit 著者 Maji, D, Jenkins, J.L, Kielkopf, C.L. 登録日 2020-06-29 公開日 2020-10-07 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Representative cancer-associated U2AF2 mutations alter RNA interactions and splicing. J.Biol.Chem., 295, 2020
2AUJ	Structure of Thermus aquaticus RNA polymerase beta'-subunit insert 分子名称: DNA-directed RNA polymerase beta' chain 著者 Chlenov, M, Masuda, S, Murakami, K.S, Nikiforov, V, Darst, S.A, Mustaev, A. 登録日 2005-08-27 公開日 2005-10-04 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structure and Function of Lineage-specific Sequence Insertions in the Bacterial RNA Polymerase beta' Subunit J.Mol.Biol., 353, 2005
2KOW	Structure of a two-G-tetrad basket-type intramolecular G-quadruplex formed by Giardia telomeric repeat d(TAGGG)4 in K+ solution (with G18-to-INO substitution) 分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*TP*AP*GP*GP*GP*TP*AP*GP*GP*GP*TP*AP*IP*GP*G)-3') 著者 Hu, L, Lim, K.W, Bouaziz, S, Phan, A.T. 登録日 2009-10-02 公開日 2009-11-17 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Giardia Telomeric Sequence d(TAGGG)(4) Forms Two Intramolecular G-Quadruplexes in K(+) Solution: Effect of Loop Length and Sequence on the Folding Topology. J.Am.Chem.Soc., 131, 2009
2AUK	Structure of E. coli RNA polymerase beta' G/G' insert 分子名称: DNA-directed RNA polymerase beta' chain 著者 Chlenov, M, Masuda, S, Murakami, K.S, Nikiforov, V, Darst, S.A, Mustaev, A. 登録日 2005-08-28 公開日 2005-10-04 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure and Function of Lineage-specific Sequence Insertions in the Bacterial RNA Polymerase beta' Subunit J.Mol.Biol., 353, 2005
2DK8	Solution structure of rpc34 subunit in RNA polymerase III from mouse 分子名称: DNA-directed RNA polymerase III 39 kDa polypeptide 著者 He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2006-04-06 公開日 2006-10-06 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structure of rpc34 subunit in RNA polymerase III from mouse To be Published
5UMV	Crystal structure of the BRCT domain of S. cerevisiae Rev1 分子名称: DNA repair protein REV1 著者 Lee, J, Xu, C, Thompson, J.R, Botuyan, M.V, Mer, G. 登録日 2017-01-29 公開日 2018-01-31 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Crystal structure of the BRCT domain of S. cerevisiae Rev1 To Be Published
6RNL	L-[Ru(TAP)2(dppz)]2+ bound to the G-quadruplex forming sequence d(TAGGGTT) 分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*TP*T)-3'), POTASSIUM ION, Ru(tap)2(dppz) complex, ... 著者 McQuaid, K.T, Hall, J.P, Cardin, C.J. 登録日 2019-05-09 公開日 2019-08-28 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (1.88 Å) 主引用文献 Three thymine/adenine binding modes of the ruthenium complex Lambda-[Ru(TAP)2(dppz)]2+to the G-quadruplex forming sequence d(TAGGGTT) shown by X-ray crystallography. Chem.Commun.(Camb.), 55, 2019

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