PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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8G1S	Cryo-EM structure of 3DVA component 1 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase minus preQ1 ligand 分子名称: DNA (31-MER), DNA (39-MER), DNA-directed RNA polymerase subunit alpha, ... 著者 Porta, J.C, Chauvier, A, Deb, I, Ellinger, E, Frank, A.T, Meze, K, Ohi, M.D, Walter, N.G. 登録日 2023-02-02 公開日 2023-06-21 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structural basis for control of bacterial RNA polymerase pausing by a riboswitch and its ligand. Nat.Struct.Mol.Biol., 30, 2023
4MEX	Crystal structure of Escherichia coli RNA polymerase in complex with salinamide A 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Feng, Y, Zhang, Y, Arnold, E, Ebright, R.H. 登録日 2013-08-27 公開日 2014-05-21 最終更新日 2014-06-25 実験手法 X-RAY DIFFRACTION (3.902 Å) 主引用文献 Transcription inhibition by the depsipeptide antibiotic salinamide A. Elife, 3, 2014
8YJM	Structure of human SPT16 MD-CTD and MCM2 HBD chaperoning a histone H3-H4 tetramer and a single chain H2B-H2A chimera 分子名称: DNA replication licensing factor MCM2, FACT complex subunit SPT16, Histone H2B 1/2/3/4/6,Histone H2A type 1-D, ... 著者 Gan, S.L, Yang, W.S, Xu, R.M. 登録日 2024-03-02 公開日 2024-03-20 最終更新日 2024-06-19 実験手法 X-RAY DIFFRACTION (4.15 Å) 主引用文献 Structure of a histone hexamer bound by the chaperone domains of SPT16 and MCM2. Sci China Life Sci, 67, 2024
9BAP	CryoEM structure of Apo-DIM2 分子名称: DNA (cytosine-5-)-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION 著者 Song, J, Shao, Z. 登録日 2024-04-04 公開日 2024-07-24 実験手法 ELECTRON MICROSCOPY (2.88 Å) 主引用文献 CryoEM structure of Apo-DIM2 To Be Published
6P19	Q21 transcription antitermination complex: loaded complex 分子名称: DNA (123-MER) fragment carrying phage-21 pR' promoter, pause element, and transcribed region, ... 著者 Yin, Z, Ebright, R.H. 登録日 2019-05-19 公開日 2019-06-26 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structural basis of Q-dependent antitermination. Proc.Natl.Acad.Sci.USA, 116, 2019
6FBV	Single particle cryo em structure of Mycobacterium tuberculosis RNA polymerase in complex with Fidaxomicin 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Das, K, Lin, W, Ebright, E. 登録日 2017-12-19 公開日 2018-02-28 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.52 Å) 主引用文献 Structural Basis of Transcription Inhibition by Fidaxomicin (Lipiarmycin A3). Mol. Cell, 70, 2018
4MEY	Crystal structure of Escherichia coli RNA polymerase holoenzyme 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Feng, Y, Zhang, Y, Arnold, E, Ebright, R.H. 登録日 2013-08-27 公開日 2014-05-21 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.948 Å) 主引用文献 Transcription inhibition by the depsipeptide antibiotic salinamide A. Elife, 3, 2014
8W8E	human co-transcriptional RNA capping enzyme RNGTT 分子名称: DNA (36-MER), DNA (45-MER), DNA-directed RNA polymerase II subunit E, ... 著者 Li, Y, Wang, Q, Xu, Y, Li, Z. 登録日 2023-09-02 公開日 2024-04-10 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structures of co-transcriptional RNA capping enzymes on paused transcription complex. Nat Commun, 15, 2024
8B3F	Pol II-CSB-CSA-DDB1-ELOF1 分子名称: DNA damage-binding protein 1, DNA excision repair protein ERCC-6, DNA excision repair protein ERCC-8, ... 著者 Kokic, G, Cramer, P. 登録日 2022-09-16 公開日 2023-09-27 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Pol II-CSB-CSA-DDB1-ELOF1 structure. To Be Published
8F3C	Cryo-EM consensus structure of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase minus preQ1 ligand 分子名称: DNA (38-MER), DNA (39-MER), DNA-directed RNA polymerase subunit alpha, ... 著者 Porta, J.C, Chauvier, A, Deb, I, Ellinger, E, Frank, A.T, Meze, K, Ohi, M.D, Walter, N.G. 登録日 2022-11-09 公開日 2023-06-21 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structural basis for control of bacterial RNA polymerase pausing by a riboswitch and its ligand. Nat.Struct.Mol.Biol., 30, 2023
8FIX	Cryo-EM structure of E. coli RNA polymerase backtracked elongation complex harboring a terminal mismatch 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Florez Ariza, A, Wee, L, Tong, A, Canari, C, Grob, P, Nogales, E, Bustamante, C. 登録日 2022-12-17 公開日 2023-03-29 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 A trailing ribosome speeds up RNA polymerase at the expense of transcript fidelity via force and allostery. Cell, 186, 2023
8G2W	Cryo-EM structure of 3DVA component 2 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase minus preQ1 ligand 分子名称: DNA (31-MER), DNA (39-MER), DNA-directed RNA polymerase subunit alpha, ... 著者 Porta, J.C, Chauvier, A, Deb, I, Ellinger, E, Frank, A.T, Meze, K, Ohi, M.D, Walter, N.G. 登録日 2023-02-06 公開日 2023-06-21 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structural basis for control of bacterial RNA polymerase pausing by a riboswitch and its ligand. Nat.Struct.Mol.Biol., 30, 2023
8G00	Cryo-EM structure of 3DVA component 0 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase minus preQ1 ligand 分子名称: DNA (31-MER), DNA (39-mer), DNA-directed RNA polymerase subunit alpha, ... 著者 Porta, J.C, Chauvier, A, Deb, I, Ellinger, E, Frank, A.T, Meze, K, Ohi, M.D, Walter, N.G. 登録日 2023-01-31 公開日 2023-06-21 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structural basis for control of bacterial RNA polymerase pausing by a riboswitch and its ligand. Nat.Struct.Mol.Biol., 30, 2023
6DG0	MEC-8 C-terminal RRM domain bound to AGCACA 分子名称: DNA (5'-D(*AP*GP*CP*AP*CP*A)-3'), Mec-8 protein 著者 Mackereth, C.D, Soufari, H. 登録日 2018-05-16 公開日 2019-08-21 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.457 Å) 主引用文献 Structure of MEC-8 RRM2 in complex with AGCACA To Be Published
8CEO	Yeast RNA polymerase II transcription pre-initiation complex with core Mediator and the +1 nucleosome 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Wang, H, Cramer, P. 登録日 2023-02-02 公開日 2023-03-08 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Yeast PIC-Mediator structure with RNA polymerase II C-terminal domain. Proc.Natl.Acad.Sci.USA, 120, 2023
6HLR	Yeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPP (core focused) 分子名称: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ... 著者 Tafur, L, Sadian, Y, Weis, F, Muller, C.W. 登録日 2018-09-11 公開日 2019-04-03 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.18 Å) 主引用文献 The cryo-EM structure of a 12-subunit variant of RNA polymerase I reveals dissociation of the A49-A34.5 heterodimer and rearrangement of subunit A12.2. Elife, 8, 2019
6HLS	Yeast apo RNA polymerase I* 分子名称: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ... 著者 Tafur, L, Sadian, Y, Weis, F, Muller, C.W. 登録日 2018-09-11 公開日 2019-04-03 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.21 Å) 主引用文献 The cryo-EM structure of a 12-subunit variant of RNA polymerase I reveals dissociation of the A49-A34.5 heterodimer and rearrangement of subunit A12.2. Elife, 8, 2019
6HLQ	Yeast RNA polymerase I* elongation complex bound to nucleotide analog GMPCPP 分子名称: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ... 著者 Tafur, L, Sadian, Y, Weis, F, Muller, C.W. 登録日 2018-09-11 公開日 2019-04-03 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.18 Å) 主引用文献 The cryo-EM structure of a 12-subunit variant of RNA polymerase I reveals dissociation of the A49-A34.5 heterodimer and rearrangement of subunit A12.2. Elife, 8, 2019
6JCX	Mycobacterium tuberculosis transcription initiation complex with ECF sigma factor sigma H and 6nt RNA 分子名称: DNA (5'-D(*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*GP*GP*T)-3'), DNA (5'-D(*TP*TP*GP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*A)-3'), DNA-directed RNA polymerase subunit alpha, ... 著者 Li, L, Zhang, Y. 登録日 2019-01-30 公開日 2019-05-29 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.903 Å) 主引用文献 Structures and mechanism of transcription initiation by bacterial ECF factors. Nucleic Acids Res., 47, 2019
4JKR	Crystal Structure of E. coli RNA Polymerase in complex with ppGpp 分子名称: DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA', DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Zuo, Y, Wang, Y, Steitz, T.A. 登録日 2013-03-11 公開日 2013-05-15 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (4.2 Å) 主引用文献 The mechanism of E. coli RNA polymerase regulation by ppGpp is suggested by the structure of their complex. Mol.Cell, 50, 2013
9C4D	The structure of 4 MntR homodimers bound to the promoter sequence of mnep 分子名称: DNA (77-MER), HTH-type transcriptional regulator MntR, MANGANESE (II) ION 著者 Shi, H, Fu, Y, Glasfeld, A, Ahuja, S. 登録日 2024-06-04 公開日 2024-08-14 実験手法 ELECTRON MICROSCOPY (4.17 Å) 主引用文献 The structure of 4 MntR homodimers bound to the promoter sequence of mnep. To Be Published
9FH9	Structure of CyclinB1 N-terminus bound to the NCP 分子名称: DNA (145-MER), G2/mitotic-specific cyclin-B1, Histone H2A type 3, ... 著者 Young, R.V.C, Muhammad, R, Alfieri, C. 登録日 2024-05-27 公開日 2024-07-24 最終更新日 2024-08-28 実験手法 ELECTRON MICROSCOPY (2.5 Å) 主引用文献 Spatial control of the APC/C ensures the rapid degradation of cyclin B1. Embo J., 2024
5U5Q	12 Subunit RNA Polymerase II at Room Temperature collected using SFX 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Bushnell, D.A, Oberthur, D, Mariani, V, Yefanov, O, Tolstikova, A, Barty, A. 登録日 2016-12-07 公開日 2017-03-29 最終更新日 2019-11-27 実験手法 X-RAY DIFFRACTION (3.8 Å) 主引用文献 Double-flow focused liquid injector for efficient serial femtosecond crystallography. Sci Rep, 7, 2017
8P4B	Structural insights into human co-transcriptional capping - structure 2 分子名称: DNA (35-MER), DNA (5'-D(P*AP*GP*CP*GP*GP*CP*GP*GP*AP*GP*CP*CP*AP*GP*CP*AP*GP*GP*GP*AP*GP*CP*TP*G)-3'), DNA-directed RNA polymerase II subunit E, ... 著者 Garg, G, Dienemann, C, Farnung, L, Schwarz, J, Linden, A, Urlaub, H, Cramer, P. 登録日 2023-05-20 公開日 2023-08-16 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural insights into human co-transcriptional capping. Mol.Cell, 83, 2023
8P4A	Structural insights into human co-transcriptional capping - structure 1 分子名称: DNA (29-MER), DNA (38-MER), DNA-directed RNA polymerase II subunit E, ... 著者 Garg, G, Dienemann, C, Farnung, L, Schwarz, J, Linden, A, Urlaub, H, Cramer, P. 登録日 2023-05-20 公開日 2023-08-16 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structural insights into human co-transcriptional capping. Mol.Cell, 83, 2023

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