PDB: 5653 件ウェブページステータス検索Chemie searchBIRD

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1JY6	B4DIMERA: A DE NOVO DESIGNED FOUR-STRANDED BETA-SHEET ASSEMBLED USING A DISULFIDE BOND 分子名称: B4DIMER 著者 Venkatraman, J, Nagana Gowda, G.A, Balaram, P. 登録日 2001-09-11 公開日 2002-06-12 最終更新日 2022-02-23 実験手法 SOLUTION NMR 主引用文献 Design and construction of an open multistranded beta-sheet polypeptide stabilized by a disulfide bridge. J.Am.Chem.Soc., 124, 2002
3JCI	2.9 Angstrom Resolution Cryo-EM 3-D Reconstruction of Close-packed PCV2 Virus-like Particles 分子名称: Capsid protein 著者 Liu, Z, Guo, F, Wang, F, Li, T.C, Jiang, W. 登録日 2015-12-13 公開日 2016-02-03 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 2.9 angstrom Resolution Cryo-EM 3D Reconstruction of Close-Packed Virus Particles. Structure, 24, 2016
8ATV	Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with 5-mer RNA, pppGpGpApApA (IC5) 分子名称: DNA (36-MER), DNA-directed RNA polymerase, mitochondrial, ... 著者 Goovaerts, Q, Shen, J, Patel, S.S, Das, K. 登録日 2022-08-24 公開日 2023-08-30 最終更新日 2023-11-01 実験手法 ELECTRON MICROSCOPY (3.39 Å) 主引用文献 Structures illustrate step-by-step mitochondrial transcription initiation. Nature, 622, 2023
8ATW	Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with 6-mer RNA, pppGpGpApApApU (IC6) 分子名称: DNA-directed RNA polymerase, mitochondrial, GUANOSINE-5'-TRIPHOSPHATE, ... 著者 Goovaerts, Q, Shen, J, Patel, S.S, Das, K. 登録日 2022-08-24 公開日 2023-08-30 最終更新日 2023-11-01 実験手法 ELECTRON MICROSCOPY (3.62 Å) 主引用文献 Structures illustrate step-by-step mitochondrial transcription initiation. Nature, 622, 2023
8ATT	Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with 4-mer RNA, pppGpGpUpA (IC4) 分子名称: DNA-directed RNA polymerase, mitochondrial, GUANOSINE-5'-TRIPHOSPHATE, ... 著者 Goovaerts, Q, Shen, J, Patel, S.S, Das, K. 登録日 2022-08-24 公開日 2023-08-30 最終更新日 2023-11-01 実験手法 ELECTRON MICROSCOPY (3.44 Å) 主引用文献 Structures illustrate step-by-step mitochondrial transcription initiation. Nature, 622, 2023
6NLB	Crystal structure of de novo designed metal-controlled dimer of mutant B1 immunoglobulin-binding domain of Streptococcal Protein G (L12H, E15V, T16L, T18I, V29H, Y33H, N37L)-apo 分子名称: Immunoglobulin G-binding protein G, MAGNESIUM ION 著者 Maniaci, B, Stec, B, Huxford, T. 登録日 2019-01-08 公開日 2019-01-23 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Design of High-Affinity Metal-Controlled Protein Dimers. Biochemistry, 58, 2019
6NL8	Crystal structure of de novo designed metal-controlled dimer of mutant B1 immunoglobulin-binding domain of Streptococcal Protein G (L12H, T16L, V29H, Y33H, N37L)-zinc 分子名称: CHLORIDE ION, Immunoglobulin G-binding protein G, ZINC ION 著者 Maniaci, B, Stec, B, Huxford, T. 登録日 2019-01-08 公開日 2019-01-23 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Design of High-Affinity Metal-Controlled Protein Dimers. Biochemistry, 58, 2019
6NZU	Structure of the human frataxin-bound iron-sulfur cluster assembly complex 分子名称: Acyl carrier protein, Cysteine desulfurase, mitochondrial, ... 著者 Fox, N.G, Yu, X, Xidong, F, Alain, M, Joseph, N, Claire, S.D, Christine, B, Han, S, Yue, W.W. 登録日 2019-02-14 公開日 2019-05-22 最終更新日 2019-07-10 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structure of the human frataxin-bound iron-sulfur cluster assembly complex provides insight into its activation mechanism. Nat Commun, 10, 2019
5WLW	Crystal Structure of the Human Mitochondrial Cysteine Desulfurase with active Cysteine Loop within ISCU1 active site, coordinating Zn ion. Complexed with human ISD11 and E. coli ACP1 at 3.3A. 分子名称: Acyl carrier protein, Cysteine desulfurase, mitochondrial, ... 著者 Boniecki, M.T, Cygler, M. 登録日 2017-07-27 公開日 2017-11-15 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.317 Å) 主引用文献 Structure and functional dynamics of the mitochondrial Fe/S cluster synthesis complex. Nat Commun, 8, 2017
4OIO	Crystal structure of Thermus thermophilus pre-insertion substrate complex for de novo transcription initiation 分子名称: 5'-D(*CP*CP*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*GP*G)-3', 5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*AP*GP*G)-3', 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, ... 著者 Zhang, Y, Ebright, R.H, Arnold, E. 登録日 2014-01-20 公開日 2014-05-07 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 GE23077 binds to the RNA polymerase 'i' and 'i+1' sites and prevents the binding of initiating nucleotides. Elife, 3, 2014
1JY4	B4DIMER: A DE NOVO DESIGNED EIGHT-STRANDED BETA-SHEET ASSEMBLED USING A DISULFIDE BOND 分子名称: B4DIMER 著者 Venkatraman, J, Nagana Gowda, G.A, Balaram, P. 登録日 2001-09-11 公開日 2002-06-12 最終更新日 2022-02-23 実験手法 SOLUTION NMR 主引用文献 Design and construction of an open multistranded beta-sheet polypeptide stabilized by a disulfide bridge. J.Am.Chem.Soc., 124, 2002
4NDL	Computational design and experimental verification of a symmetric homodimer 分子名称: ENH-c2b, computational designed homodimer 著者 Mou, Y, Huang, P.S, Hsu, F.C, Huang, S.J, Mayo, S.L. 登録日 2013-10-26 公開日 2014-11-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Computational design and experimental verification of a symmetric protein homodimer. Proc.Natl.Acad.Sci.USA, 112, 2015
1QCZ	CRYSTAL STRUCTURE OF E. COLI PURE, AN UNUSUAL MUTASE THAT CATALYZES THE CONVERSION OF N5-CARBOXYAMINOIMIDAZOLE RIBONUCLEOTIDE (N5-CAIR) TO 4-CARBOXYAMINOIMIDAZOLE RIBONUCLEOTIDE (CAIR) IN THE PURINE BIOSYNTHETIC PATHWAY 分子名称: N5-CARBOXYAMINOIMIDAZOLE RIBONUCLEOTIDE MUTASE 著者 Ealick, S.E, Mathews, I.I. 登録日 1999-05-10 公開日 1999-11-10 最終更新日 2018-01-31 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Crystal structure of Escherichia coli PurE, an unusual mutase in the purine biosynthetic pathway. Structure Fold.Des., 7, 1999
1C3T	ROTAMER STRAIN AS A DETERMINANT OF PROTEIN STRUCTURAL SPECIFICITY 分子名称: PROTEIN (1D8 UBIQUITIN) 著者 Lazar, G.A, Johnson, E.C, Desjarlais, J.R, Handel, T.M. 登録日 1999-07-28 公開日 1999-08-20 最終更新日 2024-04-10 実験手法 SOLUTION NMR 主引用文献 Rotamer strain as a determinant of protein structural specificity. Protein Sci., 8, 1999
7OMM	Cryo-EM structure of N. gonorhoeae LptDE in complex with ProMacrobodies (MBPs have not been built de novo) 分子名称: LPS-assembly lipoprotein LptE, LPS-assembly protein LptD, ProMacrobody 21,Maltodextrin-binding protein, ... 著者 Botte, M, Ni, D, Schenck, S, Zimmermann, I, Chami, M, Bocquet, N, Egloff, P, Bucher, D, Trabuco, M, Cheng, R.K.Y, Brunner, J.D, Seeger, M.A, Stahlberg, H, Hennig, M. 登録日 2021-05-24 公開日 2022-05-04 最終更新日 2022-05-11 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Cryo-EM structures of a LptDE transporter in complex with Pro-macrobodies offer insight into lipopolysaccharide translocation. Nat Commun, 13, 2022
7P19	Crystal structure of SARS-CoV-2 RBD Q498Y complexed with human ACE2 分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ... 著者 Erausquin, E, Lopez-Sagaseta, J. 登録日 2021-07-01 公開日 2022-07-13 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (3.24 Å) 主引用文献 Structural bases for the higher adherence to ACE2 conferred by the SARS-CoV-2 spike Q498Y substitution. Acta Crystallogr D Struct Biol, 78, 2022
1D3G	HUMAN DIHYDROOROTATE DEHYDROGENASE COMPLEXED WITH BREQUINAR ANALOG 分子名称: 2-BIPHENYL-4-YL-6-FLUORO-3-METHYL-QUINOLINE-4-CARBOXYLIC ACID, ACETATE ION, DECYLAMINE-N,N-DIMETHYL-N-OXIDE, ... 著者 Liu, S, Neidhardt, E.A, Grossman, T.H, Ocain, T, Clardy, J. 登録日 1999-09-29 公開日 2000-09-13 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structures of human dihydroorotate dehydrogenase in complex with antiproliferative agents. Structure Fold.Des., 8, 2000
1D3H	HUMAN DIHYDROOROTATE DEHYDROGENASE COMPLEXED WITH ANTIPROLIFERATIVE AGENT A771726 分子名称: (2Z)-2-cyano-3-hydroxy-N-[4-(trifluoromethyl)phenyl]but-2-enamide, ACETATE ION, DIHYDROOROTATE DEHYDROGENASE, ... 著者 Liu, S, Neidhardt, E.A, Grossman, T.H, Ocain, T, Clardy, J. 登録日 1999-09-29 公開日 2000-08-13 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structures of human dihydroorotate dehydrogenase in complex with antiproliferative agents. Structure Fold.Des., 8, 2000
1F1O	STRUCTURAL STUDIES OF ADENYLOSUCCINATE LYASES 分子名称: ADENYLOSUCCINATE LYASE 著者 Toth, E.A, Yeates, T. 登録日 2000-05-19 公開日 2001-01-10 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (3.25 Å) 主引用文献 The crystal structure of adenylosuccinate lyase from Pyrobaculum aerophilum reveals an intracellular protein with three disulfide bonds. J.Mol.Biol., 301, 2000
1GSO	GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE (GAR-SYN) FROM E. COLI. 分子名称: PROTEIN (GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE) 著者 Wang, W, Kappock, T.J, Stubbe, J, Ealick, S.E. 登録日 1998-09-08 公開日 1998-12-09 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 X-ray crystal structure of glycinamide ribonucleotide synthetase from Escherichia coli. Biochemistry, 37, 1998
3LTB	X-ray structure of a non-biological ATP binding protein determined in the presence of 10 mM ATP at 2.6 A after 3 weeks of incubation 分子名称: ADENOSINE-5'-DIPHOSPHATE, ATP BINDING PROTEIN-DX, CHLORIDE ION, ... 著者 Simmons, C.R, Magee, C.L, Allen, J.P, Chaput, J.C. 登録日 2010-02-15 公開日 2010-09-22 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Three-dimensional structures reveal multiple ADP/ATP binding modes for a synthetic class of artificial proteins. Biochemistry, 49, 2010
5BYO	Computationally designed left-handed alpha/alpha toroid with 12 repeats 分子名称: dTor_12x31L 著者 Doyle, L, Stoddard, B.L, Bradley, P. 登録日 2015-06-10 公開日 2015-12-16 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.503 Å) 主引用文献 Rational design of alpha-helical tandem repeat proteins with closed architectures. Nature, 528, 2015
2N6B	NMR structure of the de-novo toxin Hui1 分子名称: Hui1 著者 Mendelman, N, Zhao, R, Goldstein, S.A.N, Chill, J.H. 登録日 2015-08-17 公開日 2015-12-16 最終更新日 2015-12-30 実験手法 SOLUTION NMR 主引用文献 Designer and natural peptide toxin blockers of the KcsA potassium channel identified by phage display. Proc.Natl.Acad.Sci.USA, 112, 2015
5DI5	beta1 t801 loop variant in P3221 分子名称: beta1 t801 loop variant 著者 MacDonald, J.T, Kabasakal, B.V, Murray, J.W. 登録日 2015-08-31 公開日 2016-08-31 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.28 Å) 主引用文献 Synthetic beta-solenoid proteins with the fragment-free computational design of a beta-hairpin extension. Proc.Natl.Acad.Sci.USA, 113, 2016
5KUX	Designed influenza hemagglutinin binding protein HSB.2 分子名称: Designed influenza inhibitor protein HSB.2 著者 Lee, P.S, Bernard, S.M, Wilson, I.A. 登録日 2016-07-13 公開日 2017-06-14 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Computational design of trimeric influenza-neutralizing proteins targeting the hemagglutinin receptor binding site. Nat. Biotechnol., 35, 2017

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