PDB: 46200 件ウェブページステータス検索Chemie searchBIRD

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4D6O	THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 1H INCUBATION IN 5MM MG (STATE 2) 分子名称: 25MER, ACETATE ION, HOMING ENDONUCLEASE I-DMOI, ... 著者 Molina, R, Stella, S, Redondo, P, Gomez, H, Marcaida, M.J, Orozco, M, Prieto, J, Montoya, G. 登録日 2014-11-13 公開日 2014-12-17 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease. Nat.Struct.Mol.Biol., 22, 2015
5AY8	Crystal structure of human nucleosome containing H3.Y 分子名称: CHLORIDE ION, DNA (146-MER), H3.Y, ... 著者 Kujirai, T, Horikoshi, N, Sato, K, Maehara, K, Machida, S, Osakabe, A, Kimura, H, Ohkawa, Y, Kurumizaka, H. 登録日 2015-08-10 公開日 2016-04-06 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structure and function of human histone H3.Y nucleosome Nucleic Acids Res., 44, 2016
4D6N	THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 10 DAYS INCUBATION IN 5MM MG (STATE 7) 分子名称: 5'-D(*DCP*CP*GP*GP*CP*AP*AP*GP*GP*CP)-3', 5'-D(*DCP*GP*CP*GP*CP*CP*GP*GP*AP*AP*CP*TP*TP*DAP*C)-3', 5'-D(*DGP*CP*CP*TP*TP*GP*CP*CP*GP*GP*GP*TP*AP*DAP)-3', ... 著者 Molina, R, Stella, S, Redondo, P, Gomez, H, Marcaida, M.J, Orozco, M, Prieto, J, Montoya, G. 登録日 2014-11-13 公開日 2014-12-17 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease. Nat.Struct.Mol.Biol., 22, 2015
6HZ8	Structure of McrBC without DNA binding domains (Class 4) 分子名称: 5-methylcytosine-specific restriction enzyme B, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... 著者 Itoh, Y, Nirwan, N, Saikrishnan, K, Amunts, A. 登録日 2018-10-22 公開日 2019-07-24 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 Structure-based mechanism for activation of the AAA+ GTPase McrB by the endonuclease McrC. Nat Commun, 10, 2019
4C64	ULTRA HIGH RESOLUTION DICKERSON-DREW DODECAMER B-DNA 分子名称: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*GP)-3', MAGNESIUM ION 著者 Mcdonough, M, El-Sagheer, A.H, Brown, T, Schofield, C.J. 登録日 2013-09-17 公開日 2013-10-02 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.32 Å) 主引用文献 Structural insights into how 5-hydroxymethylation influences transcription factor binding. Chem. Commun. (Camb.), 50, 2014
455D	A6/A18 INTER-STRAND DITHIOBIS(PROPANE)-CROSSLINKED DODECAMER (CGCGAATTCGCG)2 分子名称: DITHIOBIS-(PROPANE), DNA (5'-D(*CP*GP*CP*GP*AP*(SSP)AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION 著者 Chiu, T.K, Kaczor-Grzeskowiak, M, Dickerson, R.E. 登録日 1999-03-04 公開日 1999-10-08 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.43 Å) 主引用文献 Absence of minor groove monovalent cations in the crosslinked dodecamer C-G-C-G-A-A-T-T-C-G-C-G. J.Mol.Biol., 292, 1999
2KQ5	Solution NMR structure of a section of the repeat domain of the type III effector protein PthA 分子名称: Avirulence protein 著者 Neves, J.L, Sforca, M.L, Murakami, M.T, Benedetti, C.E, Zeri, A.C. 登録日 2009-10-28 公開日 2010-09-01 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 An NMR-based structural model of the PthA repeat region reveals a TPR fold that would account for protein-protein and protein-DNA interactions To be Published
1IN4	THERMOTOGA MARITIMA RUVB HOLLIDAY JUNCTION BRANCH MIGRATION MOTOR 分子名称: ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, COBALT (II) ION, ... 著者 Putnam, C.D, Tainer, J.A. 登録日 2001-05-12 公開日 2001-08-08 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structure and mechanism of the RuvB Holliday junction branch migration motor. J.Mol.Biol., 311, 2001
1IN8	THERMOTOGA MARITIMA RUVB T158V 分子名称: ADENOSINE-5'-DIPHOSPHATE, HOLLIDAY JUNCTION DNA HELICASE RUVB 著者 Putnam, C.D, Clancy, S.B, Tsuruta, H, Wetmur, J.G, Tainer, J.A. 登録日 2001-05-12 公開日 2001-08-08 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structure and mechanism of the RuvB Holliday junction branch migration motor. J.Mol.Biol., 311, 2001
3Q23	X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with GMPCPP and Manganese: sustrate complex II 分子名称: DIHYDROGENPHOSPHATE ION, DNA (5'-D(*TP*GP*CP*CP*TP*CP*CP*CP*AP*GP*GP*CP*AP*TP*CP*CP*AP*AP*AP*AP*GP*AP*AP*GP*CP*GP*GP*AP*GP*CP*TP*TP*CP*TP*TP*C)-3'), MANGANESE (II) ION, ... 著者 Gleghorn, M.L, Murakami, K.S. 登録日 2010-12-19 公開日 2011-02-16 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 X-ray crystal structures elucidate the nucleotidyl transfer reaction of transcript initiation using two nucleotides. Proc.Natl.Acad.Sci.USA, 108, 2011
1IN6	THERMOTOGA MARITIMA RUVB K64R MUTANT 分子名称: ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, COBALT (II) ION, ... 著者 Putnam, C.D, Clancy, S.B, Tsuruta, H, Wetmur, J.G, Tainer, J.A. 登録日 2001-05-12 公開日 2001-08-08 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structure and mechanism of the RuvB Holliday junction branch migration motor. J.Mol.Biol., 311, 2001
7EL1	Structure of a protein from bacteria 分子名称: 100AA, CRISPR-associated endonuclease Cas9, DNA (28-MER), ... 著者 Liu, H, Zhu, Y, Huang, Z. 登録日 2021-04-07 公開日 2021-07-28 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.22 Å) 主引用文献 Structural basis of Staphylococcus aureus Cas9 inhibition by AcrIIA14. Nucleic Acids Res., 49, 2021
3Q24	X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with pppGpG and pyrophosphate: product complex 分子名称: DIHYDROGENPHOSPHATE ION, DNA (5'-D(*TP*GP*CP*CP*TP*CP*CP*CP*AP*GP*GP*CP*AP*TP*CP*CP*AP*AP*AP*AP*GP*AP*AP*GP*CP*GP*GP*AP*GP*CP*TP*TP*CP*TP*TP*C)-3'), GUANOSINE-5'-MONOPHOSPHATE, ... 著者 Gleghorn, M.L, Murakami, K.S. 登録日 2010-12-19 公開日 2011-02-16 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.81 Å) 主引用文献 X-ray crystal structures elucidate the nucleotidyl transfer reaction of transcript initiation using two nucleotides. Proc.Natl.Acad.Sci.USA, 108, 2011
1IN7	THERMOTOGA MARITIMA RUVB R170A 分子名称: ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, HOLLIDAY JUNCTION DNA HELICASE RUVB 著者 Putnam, C.D, Clancy, S.B, Tsuruta, H, Wetmur, J.G, Tainer, J.A. 登録日 2001-05-12 公開日 2001-08-08 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structure and mechanism of the RuvB Holliday junction branch migration motor. J.Mol.Biol., 311, 2001
1IN5	THERMOGOTA MARITIMA RUVB A156S MUTANT 分子名称: ADENOSINE-5'-DIPHOSPHATE, HOLLIDAY JUNCTION DNA HELICASE RUVB 著者 Putnam, C.D, Clancy, S.B, Tsuruta, H, Gonzalez, S, Wetmur, J.G, Tainer, J.A. 登録日 2001-05-12 公開日 2001-08-08 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure and mechanism of the RuvB Holliday junction branch migration motor. J.Mol.Biol., 311, 2001
3VA1	Crystal structure of the mammalian MDC1 FHA domain 分子名称: Mediator of DNA damage checkpoint protein 1, SULFATE ION 著者 Wu, H.H, Wu, P.Y, Huang, K.F, Kao, Y.Y, Tsai, M.D. 登録日 2011-12-28 公開日 2012-02-01 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.74 Å) 主引用文献 Structural Delineation of MDC1-FHA Domain Binding with CHK2-pThr68. Biochemistry, 2012
8KFW	Crystal structure of ZmMOC1 K229A in complex with a nicked Holliday junction soaked in Mn2+ for 600 seconds 分子名称: 1,2-ETHANEDIOL, DNA (26-MER), DNA (33-MER), ... 著者 Zhang, D, Luo, Z, Lin, Z. 登録日 2023-08-16 公開日 2024-06-26 最終更新日 2024-07-03 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 MOC1 cleaves Holliday junctions through a cooperative nick and counter-nick mechanism mediated by metal ions. Nat Commun, 15, 2024
3Q22	X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with GTP and Magnesium: substrate complex I 分子名称: DIHYDROGENPHOSPHATE ION, DNA (5'-D(*TP*GP*CP*CP*TP*CP*CP*CP*AP*GP*GP*CP*AP*TP*CP*CP*AP*AP*AP*AP*GP*AP*AP*GP*CP*GP*GP*AP*GP*CP*TP*TP*CP*TP*TP*C)-3'), GUANOSINE-5'-TRIPHOSPHATE, ... 著者 Gleghorn, M.L, Murakami, K.S. 登録日 2010-12-19 公開日 2011-02-16 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.11 Å) 主引用文献 X-ray crystal structures elucidate the nucleotidyl transfer reaction of transcript initiation using two nucleotides. Proc.Natl.Acad.Sci.USA, 108, 2011
5DCF	C-terminal domain of XerD recombinase in complex with gamma domain of FtsK 分子名称: Tyrosine recombinase XerD,DNA translocase FtsK 著者 Keller, A.N, Xin, Y, Lowe, J, Grainge, I. 登録日 2015-08-24 公開日 2016-09-07 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Activation of Xer-recombination at dif: structural basis of the FtsK gamma-XerD interaction. Sci Rep, 6, 2016
8PC5	H3K36me3 nucleosome-LEDGF/p75 PWWP domain complex 分子名称: Histone H2A, Histone H2B 1.1, Histone H3, ... 著者 Koutna, E, Kouba, T, Veverka, V. 登録日 2023-06-09 公開日 2023-08-16 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (3.02 Å) 主引用文献 Multivalency of nucleosome recognition by LEDGF. Nucleic Acids Res., 51, 2023
8PC6	H3K36me3 nucleosome-LEDGF/p75 PWWP domain complex - pose 2 分子名称: Histone H2A, Histone H2B 1.1, Histone H3, ... 著者 Koutna, E, Kouba, T, Veverka, V. 登録日 2023-06-09 公開日 2023-08-16 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (3.04 Å) 主引用文献 Multivalency of nucleosome recognition by LEDGF. Nucleic Acids Res., 51, 2023
1NZG	Crystal structure of A-DNA decamer GCGTA(3ME)ACGC, with a modified 5-methyluridine 分子名称: 5'-D(*GP*CP*GP*TP*AP*(3ME)P*AP*CP*GP*C)-3' 著者 Prhavc, M, Prakash, T.P, Minasov, G, Egli, M, Manoharan, M. 登録日 2003-02-17 公開日 2003-08-26 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 2'-O-[2-[2-(N,N-dimethylamino)ethoxy]ethyl] modified oligonucleotides: symbiosis of charge interaction factors and stereoelectronic effects Org.Lett., 5, 2003
5B42	Crystal structure of the C-terminal endonuclease domain of Aquifex aeolicus MutL. 分子名称: CADMIUM ION, DI(HYDROXYETHYL)ETHER, DNA mismatch repair protein MutL 著者 Fukui, K, Baba, S, Kumasaka, T, Yano, T. 登録日 2016-03-30 公開日 2016-07-13 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 Structural Features and Functional Dependency on beta-Clamp Define Distinct Subfamilies of Bacterial Mismatch Repair Endonuclease MutL J.Biol.Chem., 291, 2016
3VA4	Crystal structure of the mammalian MDC1 FHA domain complexed with CHK2 pThr68 peptide 分子名称: Mediator of DNA damage checkpoint protein 1, Serine/threonine-protein kinase Chk2 著者 Wu, H.H, Wu, P.Y, Huang, K.F, Kao, Y.Y, Tsai, M.D. 登録日 2011-12-28 公開日 2012-02-01 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (1.54 Å) 主引用文献 Structural Delineation of MDC1-FHA Domain Binding with CHK2-pThr68. Biochemistry, 2012
1L1H	Crystal Structure of the Quadruplex DNA-Drug Complex 分子名称: 3-PYRROLIDIN-1-YL-N-[6-(3-PYRROLIDIN-1-YL-PROPIONYLAMINO)-ACRIDIN-3-YL]-PROPIONAMIDE, 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3', POTASSIUM ION 著者 Haider, S.M, Parkinson, G.N, Neidle, S. 登録日 2002-02-16 公開日 2003-02-11 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Structure of a G-quadruplex-Ligand Complex J.Mol.Biol., 326, 2003

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