PDB: 5515 件ウェブページステータス検索Chemie searchBIRD

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5TXD	Structure of amyloid-beta derived peptide - NKGAIF 分子名称: Amyloid beta A4 protein, PHOSPHATE ION 著者 Sangwan, S, Sawaya, M.R, Eisenberg, D. 登録日 2016-11-16 公開日 2017-11-15 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.452 Å) 主引用文献 Distal amyloid beta-protein fragments template amyloid assembly. Protein Sci., 27, 2018
5TXH	Polymorphic form 2 of amyloid-beta derived peptide - IFAEDV 分子名称: IFAEDV, ISOPROPYL ALCOHOL 著者 Sangwan, S, Sawaya, M.R, Eisenberg, D. 登録日 2016-11-16 公開日 2017-11-15 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Distal amyloid beta-protein fragments template amyloid assembly. Protein Sci., 27, 2018
6C7T	Directed evolutionary changes in Kemp Eliminase KE07 - Crystal 20 round 5 分子名称: Kemp Eliminase KE07 著者 Jackson, C.J, Hong, N.-S, Carr, P.D. 登録日 2018-01-23 公開日 2018-08-01 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.83 Å) 主引用文献 The evolution of multiple active site configurations in a designed enzyme. Nat Commun, 9, 2018
6CAI	Directed evolutionary changes in Kemp Eliminase KE07 - Crystal 24 round 7 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Kemp Eliminase KE07 著者 Jackson, C.J, Hong, N.-S, Carr, P.D. 登録日 2018-01-30 公開日 2018-08-01 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.82 Å) 主引用文献 The evolution of multiple active site configurations in a designed enzyme. Nat Commun, 9, 2018
6C8B	Directed evolutionary changes in Kemp Eliminase KE07 - Crystal 23 round 6 分子名称: Kemp eliminase KE07 著者 Jackson, C.J, Hong, N.-S, Carr, P.D. 登録日 2018-01-24 公開日 2018-08-01 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.61 Å) 主引用文献 The evolution of multiple active site configurations in a designed enzyme. Nat Commun, 9, 2018
6C7H	Directed evolutionary changes in Kemp Eliminase KE07 - Crystal 18 Design Trp50Ala mutant 分子名称: Kemp eliminase KE07 著者 Jackson, C.J, Hong, N.-S, Carr, P.D. 登録日 2018-01-22 公開日 2018-08-01 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.43 Å) 主引用文献 The evolution of multiple active site configurations in a designed enzyme. Nat Commun, 9, 2018
6C7M	Directed evolutionary changes in Kemp Eliminase KE07 - Crystal 19 round 5 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Kemp Eliminase KE07 著者 Jackson, C.J, Hong, N.-S, Carr, P.D. 登録日 2018-01-22 公開日 2018-08-01 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 The evolution of multiple active site configurations in a designed enzyme. Nat Commun, 9, 2018
6C7V	Directed evolutionary changes in Kemp Eliminase KE07 - Crystal 22 round 5 分子名称: Kemp eliminase KE07 著者 Jackson, C.J, Hong, N.-S, Carr, P.D. 登録日 2018-01-23 公開日 2018-08-01 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.64 Å) 主引用文献 The evolution of multiple active site configurations in a designed enzyme. Nat Commun, 9, 2018
5UN6	Frizzled-8 complex with designed surrogate Wnt agonist, A1 dataset 分子名称: Designed Wnt agonist B12, Frizzled-8 著者 Janda, C.Y, Garcia, K.C, Jude, K.M. 登録日 2017-01-30 公開日 2017-05-03 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Surrogate Wnt agonists that phenocopy canonical Wnt and beta-catenin signalling. Nature, 545, 2017
5UN5	Frizzled-8 complex with designed surrogate Wnt agonist, crystal form 1 分子名称: Designed Wnt agonist B12, Frizzled-8 著者 Janda, C.Y, Garcia, K.C. 登録日 2017-01-30 公開日 2017-05-03 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.994 Å) 主引用文献 Surrogate Wnt agonists that phenocopy canonical Wnt and beta-catenin signalling. Nature, 545, 2017
7OMM	Cryo-EM structure of N. gonorhoeae LptDE in complex with ProMacrobodies (MBPs have not been built de novo) 分子名称: LPS-assembly lipoprotein LptE, LPS-assembly protein LptD, ProMacrobody 21,Maltodextrin-binding protein, ... 著者 Botte, M, Ni, D, Schenck, S, Zimmermann, I, Chami, M, Bocquet, N, Egloff, P, Bucher, D, Trabuco, M, Cheng, R.K.Y, Brunner, J.D, Seeger, M.A, Stahlberg, H, Hennig, M. 登録日 2021-05-24 公開日 2022-05-04 最終更新日 2022-05-11 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Cryo-EM structures of a LptDE transporter in complex with Pro-macrobodies offer insight into lipopolysaccharide translocation. Nat Commun, 13, 2022
7P19	Crystal structure of SARS-CoV-2 RBD Q498Y complexed with human ACE2 分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ... 著者 Erausquin, E, Lopez-Sagaseta, J. 登録日 2021-07-01 公開日 2022-07-13 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (3.24 Å) 主引用文献 Structural bases for the higher adherence to ACE2 conferred by the SARS-CoV-2 spike Q498Y substitution. Acta Crystallogr D Struct Biol, 78, 2022
7A4Y	Crystal structure of the P5P6 coiled-coil in complex with nanobody Nb34. 分子名称: 1,2-ETHANEDIOL, Coiled-coil P5 peptide, Coiled-coil P6 peptide, ... 著者 Hadzi, S. 登録日 2020-08-20 公開日 2021-05-05 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.157 Å) 主引用文献 A nanobody toolbox targeting dimeric coiled-coil modules for functionalization of designed protein origami structures. Proc.Natl.Acad.Sci.USA, 118, 2021
7A4T	Crystal structure of the GCN coiled-coil in complex with nanobody Nb39 分子名称: 1,2-ETHANEDIOL, ACETYL GROUP, GCN4 isoform 1, ... 著者 Hadzi, S. 登録日 2020-08-20 公開日 2021-05-05 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.124 Å) 主引用文献 A nanobody toolbox targeting dimeric coiled-coil modules for functionalization of designed protein origami structures. Proc.Natl.Acad.Sci.USA, 118, 2021
7A50	Crystal structure of the APH coiled-coil in complex with nanobody Nb26 分子名称: 1,2-ETHANEDIOL, Coiled-coil APH, Nanobody Nb26 著者 Hadzi, S. 登録日 2020-08-20 公開日 2021-05-05 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.999 Å) 主引用文献 A nanobody toolbox targeting dimeric coiled-coil modules for functionalization of designed protein origami structures. Proc.Natl.Acad.Sci.USA, 118, 2021
7A4D	Crystal structure of the APH coiled-coil in complex with nanobodies Nb28 and Nb30 分子名称: 1,2-ETHANEDIOL, ACETATE ION, APH coiled-coil, ... 著者 Hadzi, S. 登録日 2020-08-19 公開日 2021-05-05 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.694 Å) 主引用文献 A nanobody toolbox targeting dimeric coiled-coil modules for functionalization of designed protein origami structures. Proc.Natl.Acad.Sci.USA, 118, 2021
7A48	Crystal structure of the APH coiled-coil in complex with Nb49 分子名称: APH colied-coil, Nanobody 49 著者 Hadzi, S. 登録日 2020-08-19 公開日 2021-05-05 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.547 Å) 主引用文献 A nanobody toolbox targeting dimeric coiled-coil modules for functionalization of designed protein origami structures. Proc.Natl.Acad.Sci.USA, 118, 2021
7MCC	Crystal structure of an AI-designed TIM-barrel F2C 分子名称: AI-designed TIM-barrel F2C, SULFATE ION 著者 Mathews, I.I, Anand-Achim, N, Perez, C.P, Huang, P.S. 登録日 2021-04-02 公開日 2022-01-19 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.46 Å) 主引用文献 Protein sequence design with a learned potential. Nat Commun, 13, 2022
7MCD	Crystal structure of an AI-designed TIM-barrel F15C 分子名称: AI-designed TIM-barrel F15C 著者 Mathews, I.I, Anand-Achim, N, Perez, C.P, Huang, P. 登録日 2021-04-02 公開日 2022-01-19 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Protein sequence design with a learned potential. Nat Commun, 13, 2022
6V67	Apo Structure of the De Novo PD-1 Binding Miniprotein GR918.2 分子名称: PD-1 Binding Miniprotein GR918.2 著者 Bick, M.J, Bryan, C.M, Baker, D, Dimaio, F, Kang, A. 登録日 2019-12-04 公開日 2020-12-09 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.07 Å) 主引用文献 Computational design of a synthetic PD-1 agonist. Proc.Natl.Acad.Sci.USA, 118, 2021
5NJG	Structure of an ABC transporter: part of the structure that could be built de novo 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 5D3-Fab heavy chain, 5D3-Fab light chain, ... 著者 Taylor, N.M.I, Manolaridis, I, Jackson, S.M, Kowal, J, Stahlberg, H, Locher, K.P. 登録日 2017-03-28 公開日 2017-06-07 最終更新日 2020-07-29 実験手法 ELECTRON MICROSCOPY (3.78 Å) 主引用文献 Structure of the human multidrug transporter ABCG2. Nature, 546, 2017
1CH8	STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE FROM E. COLI COMPLEXED WITH A STRINGENT EFFECTOR, PPG2':3'P 分子名称: GUANOSINE 5'-DIPHOSPHATE 2':3'-CYCLIC MONOPHOSPHATE, HADACIDIN, INOSINIC ACID, ... 著者 Hou, Z, Cashel, M, Fromm, H.J, Honzatko, R.B. 登録日 1999-03-31 公開日 1999-12-29 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Effectors of the stringent response target the active site of Escherichia coli adenylosuccinate synthetase. J.Biol.Chem., 274, 1999
1DJ2	STRUCTURES OF ADENYLOSUCCINATE SYNTHETASE FROM TRITICUM AESTIVUM AND ARABIDOPSIS THALIANA 分子名称: ADENYLOSUCCINATE SYNTHETASE, GUANOSINE-5'-DIPHOSPHATE 著者 Prade, L, Cowan-Jacob, S.W, Chemla, P, Potter, S, Ward, E, Fonne-Pfister, R. 登録日 1999-12-01 公開日 2000-03-24 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structures of adenylosuccinate synthetase from Triticum aestivum and Arabidopsis thaliana. J.Mol.Biol., 296, 2000
1CIB	STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE FROM E. COLI COMPLEXED WITH GDP, IMP, HADACIDIN, AND NO3 分子名称: ADENYLOSUCCINATE SYNTHETASE, GUANOSINE-5'-DIPHOSPHATE, HADACIDIN, ... 著者 Hou, Z, Cashel, M, Fromm, H.J, Honzatko, R.B. 登録日 1999-03-31 公開日 2000-04-05 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Effectors of the stringent response target the active site of Escherichia coli adenylosuccinate synthetase. J.Biol.Chem., 274, 1999
1DY3	Ternary complex of 7,8-dihydro-6-hydroxymethylpterinpyrophosphokinase from Escherichia coli with ATP and a substrate analogue. 分子名称: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, 7,8-DIHYDRO-6-HYDROXYMETHYL-7-METHYL-7-[2-PHENYLETHYL]-PTERIN, ADENOSINE-5'-TRIPHOSPHATE, ... 著者 Stammers, D.K, Achari, A, Somers, D.O, Bryant, P.K, Rosemond, J, Scott, D.L, Champness, J.N. 登録日 2000-01-21 公開日 2000-08-18 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 2.0A X-Ray Structure of the Ternary Complex of 7,8-Dihydro-6-Hydroxymethylpterinpyrophosphokinase from Escherichia Coli with ATP and a Substrate Analogue FEBS Lett., 456, 1999

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