PDB: 2705 件ウェブページステータス検索Chemie searchBIRD

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8ETI	Fkbp39 associated 60S nascent ribosome State 1 分子名称: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... 著者 Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. 登録日 2022-10-17 公開日 2022-11-30 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8ESR	Ytm1 associated nascent 60S ribosome (-fkbp39) State 2 分子名称: 25S rRNA (cytosine-C(5))-methyltransferase nop2, 60S ribosomal protein L13, 60S ribosomal protein L14, ... 著者 Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. 登録日 2022-10-14 公開日 2022-11-30 最終更新日 2022-12-14 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8ETG	Fkbp39 associated 60S nascent ribosome State 3 分子名称: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... 著者 Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. 登録日 2022-10-17 公開日 2022-11-30 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8EUP	Ytm1 associated 60S nascent ribosome State 1A 分子名称: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... 著者 Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. 登録日 2022-10-19 公開日 2022-11-30 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8EV3	Ytm1 associated 60S nascent ribosome (-Fkbp39) State 1B 分子名称: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... 著者 Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. 登録日 2022-10-19 公開日 2022-11-30 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8EKC	Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Rybak, M.Y, Gagnon, M.G. 登録日 2022-09-20 公開日 2022-12-07 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Insights into the molecular mechanism of translation inhibition by the ribosome-targeting antibiotic thermorubin. Nucleic Acids Res., 51, 2023
8EKB	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Paranjpe, M.N, Polikanov, Y.S. 登録日 2022-09-20 公開日 2022-12-21 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Insights into the molecular mechanism of translation inhibition by the ribosome-targeting antibiotic thermorubin. Nucleic Acids Res., 51, 2023
6ELZ	State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes 分子名称: 25S rRNA (cytosine(2870)-C(5))-methyltransferase, 25S ribosomal RNA, 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase, ... 著者 Kater, L, Cheng, J, Barrio-Garcia, C, Hurt, E, Beckmann, R. 登録日 2017-09-30 公開日 2017-12-27 最終更新日 2023-02-15 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Visualizing the Assembly Pathway of Nucleolar Pre-60S Ribosomes. Cell, 171, 2017
1K73	Co-crystal Structure of Anisomycin Bound to the 50S Ribosomal Subunit 分子名称: 23S RRNA, 5S RRNA, ANISOMYCIN, ... 著者 Hansen, J, Ban, N, Nissen, P, Moore, P.B, Steitz, T.A. 登録日 2001-10-18 公開日 2003-07-22 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (3.01 Å) 主引用文献 Structures of Five Antibiotics Bound at the Peptidyl Transferase Center of the Large Ribosomal Subunit J.Mol.Biol., 330, 2003
1JJ2	Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution 分子名称: 23S RRNA, 5S RRNA, CADMIUM ION, ... 著者 Klein, D.J, Schmeing, T.M, Moore, P.B, Steitz, T.A. 登録日 2001-07-03 公開日 2001-08-01 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 The kink-turn: a new RNA secondary structure motif. EMBO J., 20, 2001
6EM1	State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes 分子名称: 25S ribosomal RNA, 5.8S ribosomal RNA, 60S ribosomal protein L13-A, ... 著者 Kater, L, Cheng, J, Barrio-Garcia, C, Hurt, E, Beckmann, R. 登録日 2017-10-01 公開日 2017-12-27 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Visualizing the Assembly Pathway of Nucleolar Pre-60S Ribosomes. Cell, 171, 2017
6ERI	Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10 alpha, ... 著者 Perez Borema, A, Aibara, S, Paul, B, Tobiasson, V, Kimanius, D, Forsberg, B.O, Wallden, K, Lindahl, E, Amunts, A. 登録日 2017-10-18 公開日 2018-04-18 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor. Nat Plants, 4, 2018
6ENF	Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Huter, P, Arenz, S, Wilson, D.N. 登録日 2017-10-04 公開日 2017-11-22 最終更新日 2018-01-31 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural Basis for Polyproline-Mediated Ribosome Stalling and Rescue by the Translation Elongation Factor EF-P. Mol. Cell, 68, 2017
6EM5	State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes 分子名称: 25S rRNA (cytosine(2870)-C(5))-methyltransferase, 25S ribosomal RNA, 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase, ... 著者 Kater, L, Cheng, J, Barrio-Garcia, C, Hurt, E, Beckmann, R. 登録日 2017-10-01 公開日 2017-12-27 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 Visualizing the Assembly Pathway of Nucleolar Pre-60S Ribosomes. Cell, 171, 2017
1KQS	The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis 分子名称: 23S RRNA, 5S RRNA, 6-AMINOHEXANOIC ACID, ... 著者 Schmeing, T.M, Seila, A.C, Hansen, J.L, Freeborn, B, Soukup, J.K, Scaringe, S.A, Strobel, S.A, Moore, P.B, Steitz, T.A. 登録日 2002-01-07 公開日 2002-02-22 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 A pre-translocational intermediate in protein synthesis observed in crystals of enzymatically active 50S subunits. Nat.Struct.Biol., 9, 2002
6D9J	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1. 分子名称: 18S rRNA, 28S rRNA, 5.8S rRNA, ... 著者 Pisareva, V.P, Pisarev, A.V, Fernandez, I.S. 登録日 2018-04-30 公開日 2018-06-06 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Dual tRNA mimicry in the Cricket Paralysis Virus IRES uncovers an unexpected similarity with the Hepatitis C Virus IRES. Elife, 7, 2018
1K9M	Co-crystal structure of tylosin bound to the 50S ribosomal subunit of Haloarcula marismortui 分子名称: 23S RRNA, 5S RRNA, CADMIUM ION, ... 著者 Hansen, J.L, Ippolito, J.A, Ban, N, Nissen, P, Moore, P.B, Steitz, T.A. 登録日 2001-10-29 公開日 2002-07-19 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 The structures of four macrolide antibiotics bound to the large ribosomal subunit. Mol.Cell, 10, 2002
1K8A	Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui 分子名称: 23S RRNA, 5S RRNA, CADMIUM ION, ... 著者 Hansen, J.L, Ippolito, J.A, Ban, N, Nissen, P, Moore, P.B, Steitz, T. 登録日 2001-10-23 公開日 2002-07-19 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 The structures of four macrolide antibiotics bound to the large ribosomal subunit. Mol.Cell, 10, 2002
1KC8	Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit 分子名称: 23S RRNA, 5S RRNA, BLASTICIDIN S, ... 著者 Hansen, J.L, Ban, N, Nissen, P, Moore, P.B, Steitz, T.A. 登録日 2001-11-07 公開日 2003-07-22 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (3.01 Å) 主引用文献 Structures of Five Antibiotics Bound at the Peptidyl Transferase Center of the Large Ribosomal Subunit J.Mol.Biol., 330, 2003
1KD1	Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui 分子名称: 23S RRNA, 5S RRNA, CADMIUM ION, ... 著者 Hansen, J.L, Ippolito, J.A, Ban, N, Nissen, P, Moore, P.B, Steitz, T.A. 登録日 2001-11-12 公開日 2002-07-19 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 The structures of four macrolide antibiotics bound to the large ribosomal subunit. Mol.Cell, 10, 2002
4V4Q	Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Schuwirth, B.S, Borovinskaya, M.A, Hau, C.W, Zhang, W, Vila-Sanjurjo, A, Holton, J.M, Cate, J.H.D. 登録日 2005-08-30 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.46 Å) 主引用文献 Structures of the bacterial ribosome at 3.5 A resolution. Science, 310, 2005
4V5E	Insights into translational termination from the structure of RF2 bound to the ribosome 分子名称: 16S ribosomal RNA, 23S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, ... 著者 Weixlbaumer, A, Jin, H, Neubauer, C, Voorhees, R.M, Petry, S, Kelley, A.C, Ramakrishnan, V. 登録日 2009-04-30 公開日 2014-07-09 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.45 Å) 主引用文献 Insights Into Translational Termination from the Structure of Rf2 Bound to the Ribosome. Science, 322, 2008
4V42	Crystal structure of the ribosome at 5.5 A resolution. 分子名称: 30S 16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Yusupov, M.M, Yusupova, G.Z, Baucom, A, Lieberman, K, Earnest, T.N, Cate, J.H.D, Noller, H.F. 登録日 2001-03-30 公開日 2014-07-09 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (5.5 Å) 主引用文献 Crystal structure of the ribosome at 5.5 A resolution Science, 292, 2001
4V6N	Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Agirrezabala, X, Liao, H, Schreiner, E, Fu, J, Ortiz-Meoz, R.F, Schulten, K, Green, R, Frank, J. 登録日 2011-12-07 公開日 2014-07-09 最終更新日 2024-02-28 実験手法 ELECTRON MICROSCOPY (12.1 Å) 主引用文献 Structural characterization of mRNA-tRNA translocation intermediates. Proc.Natl.Acad.Sci.USA, 109, 2012
4V72	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Blau, C, Bock, L.V, Schroder, G.F, Davydov, I, Fischer, N, Stark, H, Rodnina, M.V, Vaiana, A.C, Grubmuller, H. 登録日 2013-10-14 公開日 2014-07-09 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (13 Å) 主引用文献 Energy barriers and driving forces in tRNA translocation through the ribosome. Nat.Struct.Mol.Biol., 20, 2013

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