PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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7XN7	RNA polymerase II elongation complex containing Spt4/5, Elf1, Spt6, Spn1 and Paf1C 分子名称: Chromatin elongation factor SPT5, Component of the Paf1p complex, Constituent of Paf1 complex with RNA polymerase II, ... 著者 Ehara, H, Kujirai, T, Shirouzu, M, Kurumizaka, H, Sekine, S. 登録日 2022-04-28 公開日 2022-09-07 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural basis of nucleosome disassembly and reassembly by RNAPII elongation complex with FACT. Science, 377, 2022
3D70	Crystal structure of E253A mutant of BMRR bound to 22-bp oligonucleotide 分子名称: BMR promoter DNA, GLYCEROL, IMIDAZOLE, ... 著者 Newberry, K.J, Brennan, R.G. 登録日 2008-05-20 公開日 2008-08-26 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structures of BmrR-Drug Complexes Reveal a Rigid Multidrug Binding Pocket and Transcription Activation through Tyrosine Expulsion J.Biol.Chem., 283, 2008
4RAY	Crystal structure of Magnetospirillum gryphiswaldense MSR-1 Apo-Fur 分子名称: CITRATE ANION, DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport(Fur family), SULFATE ION 著者 Deng, Z, Liu, Z, Chen, Z. 登録日 2014-09-12 公開日 2015-07-15 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Mechanistic insights into metal ion activation and operator recognition by the ferric uptake regulator. Nat Commun, 6
4RAZ	Crystal structure of Magnetospirillum gryphiswaldense MSR-1 holo-Fur 分子名称: 1,2-ETHANEDIOL, DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport(Fur family), MANGANESE (II) ION 著者 Deng, Z, Wang, Q, Chen, Z. 登録日 2014-09-12 公開日 2015-07-15 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Mechanistic insights into metal ion activation and operator recognition by the ferric uptake regulator. Nat Commun, 6
4RB0	Crystal structure of Magnetospirillum gryphiswaldense MSR-1 SeMet-Apo-Fur 分子名称: CITRATE ANION, DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport(Fur family), SULFATE ION 著者 Deng, Z, Chen, Z. 登録日 2014-09-12 公開日 2015-07-15 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Mechanistic insights into metal ion activation and operator recognition by the ferric uptake regulator. Nat Commun, 6
1F5T	DIPHTHERIA TOX REPRESSOR (C102D MUTANT) COMPLEXED WITH NICKEL AND DTXR CONSENSUS BINDING SEQUENCE 分子名称: 43MER DNA CONTAINING DXTR CONSENSUS BINDING SEQUENCE, DIPHTHERIA TOXIN REPRESSOR, NICKEL (II) ION 著者 Chen, S, White, A, Love, J, Murphy, J.R, Ringe, D. 登録日 2000-06-15 公開日 2000-09-25 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Methyl groups of thymine bases are important for nucleic acid recognition by DtxR. Biochemistry, 39, 2000
6XAT	Crystal structure of the human FoxP4 DNA binding Domain 分子名称: FOXP4 protein, SODIUM ION 著者 VIllalobos, P, Castro-Fernandez, V, Medina, E, Gonzalez-Ordenes, F, Maturana, P, Herrera-Morande, A, Ramirez-Sarmiento, C.A, Babul, J. 登録日 2020-06-04 公開日 2021-06-09 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Unraveling the folding and dimerization properties of the human FoxP subfamily of transcription factors. Febs Lett., 597, 2023
7ASV	Crystal structure of tWHD2 of Rpc5 subunit of human RNA Polymerase III 分子名称: ACETATE ION, DNA-directed RNA polymerase III subunit RPC5 著者 Vannini, A, Abascal-Palacios, G, Ramsay, E.P. 登録日 2020-10-28 公開日 2020-12-30 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Structure of human RNA polymerase III. Nat Commun, 11, 2020
2C7A	STRUCTURE OF THE PROGESTERONE RECEPTOR-DNA COMPLEX 分子名称: 5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*AP*AP *CP*TP*GP*TP*TP*CP*TP*G)-3', 5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*GP*TP *TP*TP*GP*TP*TP*CP*TP*G)-3', PROGESTERONE RECEPTOR, ... 著者 Roemer, S.C, Donham, D.C, Sherman, L, Pon, V.H, Edwards, D.P, Churchill, M.E.A. 登録日 2005-11-19 公開日 2006-08-30 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure of the Progesterone Receptor-Deoxyribonucleic Acid Complex: Novel Interactions Required for Binding to Half-Site Response Elements. Mol.Endocrinol., 20, 2006
3B02	Crystal structure of TTHB099, a transcriptional regulator CRP family from Thermus thermophilus HB8 分子名称: Transcriptional regulator, Crp family 著者 Agari, Y, Kuramitsu, S, Shinkai, A, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2011-06-03 公開日 2011-06-15 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 X-ray crystal structure of TTHB099, a CRP/FNR superfamily transcriptional regulator from Thermus thermophilus HB8, reveals a DNA-binding protein with no required allosteric effector molecule Proteins, 80, 2012
5ZKO	Crystal structure of the CRTC2-CREB-CRE complex 分子名称: CREB-regulated transcription coactivator 2, Cyclic AMP-responsive element-binding protein 1, DNA (5'-D(*CP*TP*TP*GP*GP*CP*TP*GP*AP*CP*GP*TP*CP*AP*GP*CP*CP*AP*AP*G)-3') 著者 Xiang, S, Zhai, L, Valecia-Swain, J. 登録日 2018-03-24 公開日 2018-06-20 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.05 Å) 主引用文献 Structural Insights into the CRTC2-CREB Complex Assembly on CRE. J. Mol. Biol., 430, 2018
4S20	Structural basis for transcription reactivation by RapA 分子名称: 5'-D(P*AP*CP*GP*AP*CP*TP*GP*AP*GP*CP*CP*GP*AP*TP*G)-3', 5'-R(P*AP*UP*CP*GP*GP*CP*UP*CP*A)-3', DNA-directed RNA polymerase subunit alpha, ... 著者 Liu, B, Zuo, Y, Steitz, T.A. 登録日 2015-01-16 公開日 2015-02-04 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (4.7 Å) 主引用文献 Structural basis for transcription reactivation by RapA. Proc.Natl.Acad.Sci.USA, 112, 2015
5ZK1	Crystal Structure of the CRTC2(SeMet)-CREB-CRE complex 分子名称: CREB-regulated transcription coactivator 2, Cyclic AMP-responsive element-binding protein 1, DNA (5'-D(*CP*TP*TP*GP*GP*CP*TP*GP*AP*CP*GP*TP*CP*AP*GP*CP*CP*AP*AP*G)-3'), ... 著者 Xiang, S, Zhai, L, Valencia-Swain, J. 登録日 2018-03-22 公開日 2018-06-20 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.05 Å) 主引用文献 Structural Insights into the CRTC2-CREB Complex Assembly on CRE. J. Mol. Biol., 430, 2018
5O6D	Structure of ScPif1 in complex with polydT and ATPgS 分子名称: ATP-dependent DNA helicase PIF1, DNA (5'-D(P*TP*TP*TP*TP*TP*T)-3'), MAGNESIUM ION, ... 著者 Lu, K.Y, Chen, W.F, Rety, S, Liu, N.N, Xu, X.G. 登録日 2017-06-06 公開日 2017-12-13 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3.283 Å) 主引用文献 Insights into the structural and mechanistic basis of multifunctional S. cerevisiae Pif1p helicase. Nucleic Acids Res., 46, 2018
7Y8R	The nucleosome-bound human PBAF complex 分子名称: ACTB protein (Fragment), ADENOSINE-5'-DIPHOSPHATE, AT-rich interactive domain-containing protein 2, ... 著者 Wang, L, Yu, J, Yu, Z, Wang, Q, He, S, Xu, Y. 登録日 2022-06-24 公開日 2022-12-07 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 Structure of nucleosome-bound human PBAF complex. Nat Commun, 13, 2022
1BHI	STRUCTURE OF TRANSACTIVATION DOMAIN OF CRE-BP1/ATF-2, NMR, 20 STRUCTURES 分子名称: CRE-BP1 著者 Nagadoi, A, Nakazawa, K, Uda, H, Maekawa, T, Ishii, S, Nishimura, Y. 登録日 1998-06-09 公開日 1999-06-15 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of the transactivation domain of ATF-2 comprising a zinc finger-like subdomain and a flexible subdomain. J.Mol.Biol., 287, 1999
4WOI	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Pulk, A, Cate, J.H.D, Blanchard, S, Wasserman, M, Altman, R, Zhou, Z, Zinder, J, Green, K, Garneau-Tsodikova, S. 登録日 2014-10-15 公開日 2015-08-05 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Chemically related 4,5-linked aminoglycoside antibiotics drive subunit rotation in opposite directions. Nat Commun, 6, 2015
2H27	Crystal Structure of Escherichia coli SigmaE Region 4 Bound to its-35 Element DNA 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 5'-D(*C*CP*GP*AP*AP*GP*TP*TP*CP*CP*GP*G)-3', 5'-D(*CP*CP*CP*GP*GP*AP*AP*CP*TP*TP*CP*G)-3', ... 著者 Lane, W.J, Darst, S.A. 登録日 2006-05-18 公開日 2006-08-22 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 The structural basis for promoter -35 element recognition by the group IV sigma factors. Plos Biol., 4, 2006
9FOF	Structure of heteromeric amyloid filament of TDP-43 and AXNA11 from FTLD-TDP Type C (variant 2) 分子名称: Annexin A11, TAR DNA-binding protein 43 著者 Arseni, D, Ryskeldi-Falcon, B. 登録日 2024-06-11 公開日 2024-07-24 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Heteromeric amyloid filaments of ANXA11 and TDP-43 in FTLD-TDP Type C. Biorxiv, 2024
9FOR	Structure of heteromeric amyloid filament of TDP-43 and AXNA11 from FTLD-TDP Type C (variant 1) 分子名称: Annexin A11, TAR DNA-binding protein 43 著者 Arseni, D, Ryskeldi-Falcon, B. 登録日 2024-06-12 公開日 2024-07-24 実験手法 ELECTRON MICROSCOPY (2.75 Å) 主引用文献 Heteromeric amyloid filaments of ANXA11 and TDP-43 in FTLD-TDP Type C. Biorxiv, 2024
7SHL	Structure of Xenopus laevis CRL2Lrr1 (State 2) 分子名称: CULLIN_2 domain-containing protein, Elongin-C, Lrr1, ... 著者 Zhou, H, Brown, A. 登録日 2021-10-09 公開日 2021-12-08 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Structure of CRL2Lrr1, the E3 ubiquitin ligase that promotes DNA replication termination in vertebrates. Nucleic Acids Res., 49, 2021
7SHK	Structure of Xenopus laevis CRL2Lrr1 (State 1) 分子名称: CULLIN_2 domain-containing protein, Elongin-C, Lrr1, ... 著者 Zhou, H, Brown, A. 登録日 2021-10-09 公開日 2021-12-08 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structure of CRL2Lrr1, the E3 ubiquitin ligase that promotes DNA replication termination in vertebrates. Nucleic Acids Res., 49, 2021
6SKL	Cryo-EM structure of the CMG Fork Protection Complex at a replication fork - Conformation 1 分子名称: Cell division control protein 45, Chromosome segregation in meiosis protein 3, DNA fork, ... 著者 Yeeles, J, Baretic, D, Jenkyn-Bedford, M. 登録日 2019-08-16 公開日 2020-05-06 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Cryo-EM Structure of the Fork Protection Complex Bound to CMG at a Replication Fork. Mol.Cell, 78, 2020
5U8S	Structure of eukaryotic CMG helicase at a replication fork 分子名称: ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 45, DNA (26-MER), ... 著者 Li, H, Li, B, Georgescu, R, Yuan, Z, Santos, R, Sun, J, Zhang, D, Yurieva, O, O'Donnell, M.E. 登録日 2016-12-14 公開日 2017-01-25 最終更新日 2020-01-01 実験手法 ELECTRON MICROSCOPY (6.101 Å) 主引用文献 Structure of eukaryotic CMG helicase at a replication fork and implications to replisome architecture and origin initiation. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
8DQ1	Quorum-sensing receptor RhlR bound to PqsE 分子名称: 2-aminobenzoylacetyl-CoA thioesterase, 4-(3-bromophenoxy)-N-[(3S)-2-oxothiolan-3-yl]butanamide, DNA (5'-D(*AP*CP*CP*TP*GP*CP*CP*AP*GP*AP*CP*TP*GP*CP*AP*CP*AP*G)-3'), ... 著者 Paczkowski, J.E, Fromme, J.C, Feathers, J.R. 登録日 2022-07-18 公開日 2022-12-07 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 Structure of the RhlR-PqsE complex from Pseudomonas aeruginosa reveals mechanistic insights into quorum-sensing gene regulation. Structure, 30, 2022

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