1F5T

DIPHTHERIA TOX REPRESSOR (C102D MUTANT) COMPLEXED WITH NICKEL AND DTXR CONSENSUS BINDING SEQUENCE

Summary for 1F5T

Descriptor43MER DNA CONTAINING DXTR CONSENSUS BINDING SEQUENCE, DIPHTHERIA TOXIN REPRESSOR, NICKEL (II) ION, ... (5 entities in total)
Functional Keywordsiron-regulated repressor, dna-protein complex, helix-turn-helix motif, transcription regulator, diphtheria tox repressor, dna-binding regulatory protein, transcription-dna complex, transcription/dna
Biological sourceCorynebacterium diphtheriae
Total number of polymer chains6
Total molecular weight82638.63
Authors
Chen, S.,White, A.,Love, J.,Murphy, J.R.,Ringe, D. (deposition date: 2000-06-15, release date: 2000-09-25, Last modification date: 2011-07-13)
Primary citation
Chen, C.S.,White, A.,Love, J.,Murphy, J.R.,Ringe, D.
Methyl groups of thymine bases are important for nucleic acid recognition by DtxR.
Biochemistry, 39:10397-10407, 2000
PubMed: 10956029 (PDB entries with the same primary citation)
DOI: 10.1021/bi0009284
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (3 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.26131 1.1% 7.0% 0.5%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation reportDownload
169117
PDB entries from 2020-09-23