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1F5T

DIPHTHERIA TOX REPRESSOR (C102D MUTANT) COMPLEXED WITH NICKEL AND DTXR CONSENSUS BINDING SEQUENCE

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCHESS BEAMLINE A1
Synchrotron siteCHESS
BeamlineA1
Temperature [K]110
Detector technologyCCD
DetectorADSC QUANTUM
Spacegroup nameP 41
Unit cell lengths116.178, 116.178, 142.919
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.830 - 3.000
R-factor0.245
Rwork0.245
R-free0.27300
RMSD bond length0.007
RMSD bond angle19.800

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Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareCNS (0.9)
Data quality characteristics
 Overall
Low resolution limit [Å]50.000
High resolution limit [Å]3.000
Rmerge0.149
Total number of observations520936

*

Number of reflections37719
<I/σ(I)>10.5
Completeness [%]99.2
Redundancy13.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.5298drop consists of 2 micro litter of protein solution and 1 micro litter of reservoir solution

*

Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111sodium cacodylate
211MgCl2
311spermine
412MgCl2
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein0.5 (mM)
101reservoir10 (mM)
111reservoirspermine2 (mM)
21dropDNA0.66 (mM)
31dropTris-HCl27 (mM)
41drop320 (mM)
51dropdithiothreitol0.74 (mM)
61drop4.9 (mM)
71drop49 (mM)
81drop1.48 (mM)
91reservoirsodium cacodylate100 (mM)

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PDB entries from 2024-04-24

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