PDB: 47065 件ウェブページステータス検索Chemie searchBIRD

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6GYS	Cryo-EM structure of the CBF3-CEN3 complex of the budding yeast kinetochore 分子名称: Centromere DNA-binding protein complex CBF3 subunit A, Centromere DNA-binding protein complex CBF3 subunit B, Centromere DNA-binding protein complex CBF3 subunit C, ... 著者 Yan, K, Zhang, Z, Yang, J, McLaughlin, S.H, Barford, D. 登録日 2018-07-01 公開日 2018-12-05 最終更新日 2019-12-11 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 Architecture of the CBF3-centromere complex of the budding yeast kinetochore. Nat. Struct. Mol. Biol., 25, 2018
6IP8	Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv) 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... 著者 Yokoyama, T, Shigematsu, H, Shirouzu, M, Imataka, H, Ito, T. 登録日 2018-11-02 公開日 2019-05-29 最終更新日 2019-11-06 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 HCV IRES Captures an Actively Translating 80S Ribosome. Mol.Cell, 74, 2019
6J2Q	Yeast proteasome in Ub-accepted state (C1-b) 分子名称: 26S protease regulatory subunit 4 homolog, 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B homolog, ... 著者 Cong, Y. 登録日 2019-01-02 公開日 2019-03-13 最終更新日 2019-04-10 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structural Snapshots of 26S Proteasome Reveal Tetraubiquitin-Induced Conformations. Mol. Cell, 73, 2019
6J5J	Cryo-EM structure of the mammalian E-state ATP synthase 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase F1 subunit epsilon, ... 著者 Gu, J, Zhang, L, Yi, J, Yang, M. 登録日 2019-01-11 公開日 2019-06-26 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.45 Å) 主引用文献 Cryo-EM structure of the mammalian ATP synthase tetramer bound with inhibitory protein IF1. Science, 364, 2019
6HRM	E. coli 70S d2d8 stapled ribosome 分子名称: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ... 著者 Schmied, W.H, Tnimov, Z, Uttamapinant, C, Rae, C.D, Fried, S.D, Chin, J.W. 登録日 2018-09-27 公開日 2018-12-19 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.96 Å) 主引用文献 Controlling orthogonal ribosome subunit interactions enables evolution of new function. Nature, 564, 2018
6HUM	Structure of the photosynthetic complex I from Thermosynechococcus elongatus 分子名称: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, IRON/SULFUR CLUSTER, ... 著者 Schuller, J.M, Schuller, S.K, Kurisu, G, Engel, B.D, Nowaczyk, M.M. 登録日 2018-10-09 公開日 2019-01-09 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.34 Å) 主引用文献 Structural adaptations of photosynthetic complex I enable ferredoxin-dependent electron transfer. Science, 363, 2019
6JO6	Structure of the green algal photosystem I supercomplex with light-harvesting complex I 分子名称: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... 著者 Suga, M, Miyazaki, N, Takahashi, Y. 登録日 2019-03-20 公開日 2019-06-19 最終更新日 2019-06-26 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structure of the green algal photosystem I supercomplex with a decameric light-harvesting complex I. Nat.Plants, 5, 2019
6JO5	Structure of the green algal photosystem I supercomplex with light-harvesting complex I 分子名称: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... 著者 Suga, M, Miyazaki, N, Takahashi, Y. 登録日 2019-03-20 公開日 2019-06-19 最終更新日 2019-06-26 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structure of the green algal photosystem I supercomplex with a decameric light-harvesting complex I. Nat.Plants, 5, 2019
6GXM	Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Graf, M, Huter, P, Maracci, C, Peterek, M, Rodnina, M.V, Wilson, D.N. 登録日 2018-06-27 公開日 2018-08-22 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Visualization of translation termination intermediates trapped by the Apidaecin 137 peptide during RF3-mediated recycling of RF1. Nat Commun, 9, 2018
3S0F	Apis mellifera OBP14 native apo, crystal form 2 分子名称: OBP14 著者 Spinelli, S, Lagarde, A, Iovinella, I, Tegoni, M, Pelosi, P, Cambillau, C. 登録日 2011-05-13 公開日 2011-11-30 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.03 Å) 主引用文献 Crystal structure of Apis mellifera OBP14, a C-minus odorant-binding protein, and its complexes with odorant molecules. Insect Biochem.Mol.Biol., 42, 2012
6GZZ	T. thermophilus hibernating 100S ribosome (amc) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Flygaard, R.K, Jenner, L.B. 登録日 2018-07-05 公開日 2018-10-24 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4.13 Å) 主引用文献 Cryo-EM structure of the hibernating Thermus thermophilus 100S ribosome reveals a protein-mediated dimerization mechanism. Nat Commun, 9, 2018
6H4N	Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S1, ... 著者 Beckert, B, Turk, M, Czech, A, Berninghausen, O, Beckmann, R, Ignatova, Z, Plitzko, J, Wilson, N.D. 登録日 2018-07-22 公開日 2018-09-05 最終更新日 2018-10-24 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1. Nat Microbiol, 3, 2018
6HCM	Structure of the rabbit collided di-ribosome (stalled monosome) 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ... 著者 Juszkiewicz, S, Chandrasekaran, V, Lin, Z, Kraatz, S, Ramakrishnan, V, Hegde, R.S. 登録日 2018-08-15 公開日 2018-10-17 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (6.8 Å) 主引用文献 ZNF598 Is a Quality Control Sensor of Collided Ribosomes. Mol. Cell, 72, 2018
3T5H	Ternary complex of HNE Adduct modified DNA (5'-CXG-3' vs 13-mer) with Dpo4 and incoming dDGT 分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*CP*AP*CP*(HN1)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), ... 著者 Banerjee, S, Christov, P.P, Kozekova, A, Rizzo, C.J, Stone, M.P. 登録日 2011-07-27 公開日 2012-02-15 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Replication bypass of the trans-4-Hydroxynonenal-derived (6S,8R,11S)-1,N(2)-deoxyguanosine DNA adduct by the sulfolobus solfataricus DNA polymerase IV. Chem.Res.Toxicol., 25, 2012
6JW4	Degenerate RVD RG forms a distinct loop conformation 分子名称: DNA (5'-D(*AP*GP*AP*GP*AP*CP*GP*CP*GP*AP*AP*GP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*(5HC)P*GP*CP*GP*TP*CP*TP*CP*T)-3'), TAL effector 著者 Liu, L, Yi, C. 登録日 2019-04-18 公開日 2020-04-22 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.09 Å) 主引用文献 Structural Insights into the Specific Recognition of 5-methylcytosine and 5-hydroxymethylcytosine by TAL Effectors. J.Mol.Biol., 432, 2020
6JW3	Degenerate RVD RG forms a distinct loop conformation 分子名称: DNA (5'-D(*AP*GP*AP*GP*AP*CP*GP*CP*GP*AP*AP*GP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*(5CM)P*GP*CP*GP*TP*CP*TP*CP*T)-3'), TAL effector 著者 Liu, L, Yi, C. 登録日 2019-04-18 公開日 2020-04-22 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structural Insights into the Specific Recognition of 5-methylcytosine and 5-hydroxymethylcytosine by TAL Effectors. J.Mol.Biol., 432, 2020
3QDZ	Crystal structure of the human thrombin mutant D102N in complex with the extracellular fragment of human PAR4. 分子名称: Proteinase-activated receptor 4, Thrombin heavy chain, Thrombin light chain 著者 Gandhi, P, Chen, Z, Appelbaum, E, Zapata, F, Di Cera, E. 登録日 2011-01-19 公開日 2011-06-29 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural basis of thrombin-protease-receptor interactions IUBMB LIFE, 63, 2011
6HL0	Crystal Structure of Farnesoid X receptor (FXR) with bound NCoA-2 peptide 分子名称: Bile acid receptor, NCoA-2 peptide (Nuclear receptor coactivator 2), LYS-GLU-ASN-ALA-LEU-LEU-ARG-TYR-LEU-LEU-ASP-LYS-ASP 著者 Kudlinzki, D, Merk, D, Linhard, V.L, Saxena, K, Schubert-Zsilavecz, M, Schwalbe, H. 登録日 2018-09-10 公開日 2019-05-29 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.66 Å) 主引用文献 Molecular tuning of farnesoid X receptor partial agonism. Nat Commun, 10, 2019
6ICZ	Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstrom 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent RNA helicase DHX8, ... 著者 Zhang, X, Zhan, X, Yan, C, Shi, Y. 登録日 2018-09-07 公開日 2019-03-13 最終更新日 2020-10-14 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structures of the human spliceosomes before and after release of the ligated exon. Cell Res., 29, 2019
6IP6	Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii) 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... 著者 Yokoyama, T, Shigematsu, H, Shirouzu, M, Imataka, H, Ito, T. 登録日 2018-11-02 公開日 2019-05-29 最終更新日 2019-11-06 実験手法 ELECTRON MICROSCOPY (4.5 Å) 主引用文献 HCV IRES Captures an Actively Translating 80S Ribosome. Mol.Cell, 74, 2019
6JW2	Universal RVD R* accommodates 5hmC via water-mediated interactions 分子名称: DNA (5'-D(*AP*GP*AP*GP*AP*CP*GP*CP*GP*AP*AP*GP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*(5HC)P*GP*CP*GP*TP*CP*TP*CP*T)-3'), TAL effector 著者 Liu, L, Yi, C. 登録日 2019-04-18 公開日 2020-04-22 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.03 Å) 主引用文献 Structural Insights into the Specific Recognition of 5-methylcytosine and 5-hydroxymethylcytosine by TAL Effectors. J.Mol.Biol., 432, 2020
3Q91	Crystal Structure of Human Uridine Diphosphate Glucose Pyrophosphatase (NUDT14) 分子名称: Uridine diphosphate glucose pyrophosphatase 著者 Tresaugues, L, Siponen, M.I, Arrowsmith, C.H, Berglund, H, Bountra, C, Collins, R, Edwards, A.M, Ekblad, T, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Johansson, I, Karlberg, T, Kol, S, Kotenyova, T, Kouznetsova, E, Moche, M, Nyman, T, Persson, C, Schuler, H, Schutz, P, Thorsell, A.G, Van Der Berg, S, Wahlberg, E, Weigelt, J, Welin, M, Nordlund, P, Structural Genomics Consortium (SGC) 登録日 2011-01-07 公開日 2011-02-16 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal Structure of Human Uridine Diphosphate Glucose Pyrophosphatase (NUDT14) To be Published
6KF3	Cryo-EM structure of Thermococcus kodakarensis RNA polymerase 分子名称: DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit A'', DNA-directed RNA polymerase subunit D, ... 著者 Jun, S.-H, Hyun, J, Jeong, H, Cha, J.S, Kim, H, Bartlett, M.S, Cho, H.-S, Murakami, K.S. 登録日 2019-07-06 公開日 2020-07-01 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Direct binding of TFE alpha opens DNA binding cleft of RNA polymerase. Nat Commun, 11, 2020
3UBR	Laue structure of Shewanella oneidensis cytochrome-c Nitrite Reductase 分子名称: CALCIUM ION, Cytochrome c-552, HEME C 著者 Youngblut, M, Judd, E.T, Srajer, V, Sayed, B, Goeltzner, T, Elliott, S, Schmidt, M, Pacheco, A. 登録日 2011-10-24 公開日 2012-04-25 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.59 Å) 主引用文献 Laue crystal structure of Shewanella oneidensis cytochrome c nitrite reductase from a high-yield expression system. J.Biol.Inorg.Chem., 17, 2012
5OVK	Crystal structure MabA bound to NADPH from M. smegmatis 分子名称: 3-oxoacyl-[acyl-carrier-protein] reductase FabG, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE 著者 Kussau, T, Van Wyk, N, Viljoen, A, Olieric, V, Flipo, M, Kremer, L, Blaise, M. 登録日 2017-08-29 公開日 2018-02-28 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Structural rearrangements occurring upon cofactor binding in the Mycobacterium smegmatis beta-ketoacyl-acyl carrier protein reductase MabA. Acta Crystallogr D Struct Biol, 74, 2018

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