6A5L
| RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome, with foreign DNA | 分子名称: | DNA (198-MER), DNA (42-MER), DNA-directed RNA polymerase subunit, ... | 著者 | Kujirai, T, Ehara, H, Fujino, Y, Shirouzu, M, Sekine, S, Kurumizaka, H. | 登録日 | 2018-06-24 | 公開日 | 2018-10-03 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (5.6 Å) | 主引用文献 | Structural basis of the nucleosome transition during RNA polymerase II passage. Science, 362, 2018
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6A7U
| Crystal structure of histone H2A.Bbd-H2B dimer | 分子名称: | Histone H2B type 2-E,Histone H2A-Bbd type 2/3 | 著者 | Dai, L, Zhou, Z. | 登録日 | 2018-07-04 | 公開日 | 2019-02-27 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Crystal structure of the histone heterodimer containing histone variant H2A.Bbd. Biochem. Biophys. Res. Commun., 503, 2018
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6A5P
| RNA polymerase II elongation complex stalled at SHL(-5) of the nucleosome | 分子名称: | DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... | 著者 | Kujirai, T, Ehara, H, Fujino, Y, Shirouzu, M, Sekine, S, Kurumizaka, H. | 登録日 | 2018-06-25 | 公開日 | 2018-10-03 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (7 Å) | 主引用文献 | Structural basis of the nucleosome transition during RNA polymerase II passage. Science, 362, 2018
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6L49
| H3-CA-H3 tri-nucleosome with the 22 base-pair linker DNA | 分子名称: | DNA (485-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... | 著者 | Takizawa, Y, Ho, C.-H, Tachiwana, H, Matsunami, H, Ohi, M, Wolf, M, Kurumizaka, H. | 登録日 | 2019-10-16 | 公開日 | 2019-12-04 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (18.9 Å) | 主引用文献 | Cryo-EM Structures of Centromeric Tri-nucleosomes Containing a Central CENP-A Nucleosome. Structure, 28, 2020
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6KXV
| Crystal structure of a nucleosome containing Leishmania histone H3 | 分子名称: | DNA (146-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... | 著者 | Dacher, M, Taguchi, H, Kujirai, T, Kurumizaka, H. | 登録日 | 2019-09-13 | 公開日 | 2020-07-22 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (3.63 Å) | 主引用文献 | Incorporation and influence of Leishmania histone H3 in chromatin. Nucleic Acids Res., 47, 2019
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5XF4
| Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having a 1,2-diphenylethylenediamine linker (S,S-configuration) | 分子名称: | (1S,2S)-1,2-diphenylethane-1,2-diamine, DNA (145-MER), Histone H2A type 1-B/E, ... | 著者 | Ma, Z, Adhireksan, Z, Murray, B.S, Dyson, P.J, Davey, C.A. | 登録日 | 2017-04-07 | 公開日 | 2017-10-11 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.87 Å) | 主引用文献 | Nucleosome acidic patch-targeting binuclear ruthenium compounds induce aberrant chromatin condensation Nat Commun, 8, 2017
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6LA8
| 349 bp di-nucleosome harboring cohesive DNA termini assembled with linker histone H1.0 | 分子名称: | CALCIUM ION, DNA (349-MER), Histone H1.0, ... | 著者 | Adhireksan, Z, Lee, P.L, Sharma, D, Davey, C.A. | 登録日 | 2019-11-12 | 公開日 | 2020-10-07 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (3.4 Å) | 主引用文献 | Near-atomic resolution structures of interdigitated nucleosome fibres. Nat Commun, 11, 2020
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5X7X
| The crystal structure of the nucleosome containing H3.3 at 2.18 angstrom resolution | 分子名称: | CHLORIDE ION, DNA (146-MER), Histone H2A type 1-B/E, ... | 著者 | Arimura, Y, Taguchi, H, Kurumizaka, H. | 登録日 | 2017-02-27 | 公開日 | 2017-04-19 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.184 Å) | 主引用文献 | Crystal Structure and Characterization of Novel Human Histone H3 Variants, H3.6, H3.7, and H3.8 Biochemistry, 56, 2017
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6KVD
| Crystal structure of human nucleosome containing H2A.J | 分子名称: | CHLORIDE ION, DNA (146-MER), Histone H2A.J, ... | 著者 | Tanaka, H, Koyama, M, Sato, S, Kujirai, T, Kurumizaka, H. | 登録日 | 2019-09-04 | 公開日 | 2019-12-18 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.21 Å) | 主引用文献 | Biochemical and structural analyses of the nucleosome containing human histone H2A.J. J.Biochem., 167, 2020
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6L4A
| H3-H3-H3 tri-nucleosome with the 22 base-pair linker DNA | 分子名称: | DNA (485-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... | 著者 | Takizawa, Y, Ho, C.-H, Tachiwana, H, Matsunami, H, Ohi, M, Wolf, M, Kurumizaka, H. | 登録日 | 2019-10-16 | 公開日 | 2019-12-04 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (12.3 Å) | 主引用文献 | Cryo-EM Structures of Centromeric Tri-nucleosomes Containing a Central CENP-A Nucleosome. Structure, 28, 2020
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5ZBX
| The crystal structure of the nucleosome containing histone H3.1 CATD(V76Q, K77D) | 分子名称: | CHLORIDE ION, DNA (146-MER), Histone H2A type 1-B/E, ... | 著者 | Arimura, Y, Takagi, H, Kurumizaka, H. | 登録日 | 2018-02-13 | 公開日 | 2019-02-13 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.58 Å) | 主引用文献 | The CENP-A centromere targeting domain facilitates H4K20 monomethylation in the nucleosome by structural polymorphism. Nat Commun, 10, 2019
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5ZEN
| Crystal structure of human topoisomerase II beta in complex with DNA: a new quaternary conformation showing opening of the protein-linked DNA-gate | 分子名称: | DNA (5'-D(P*AP*GP*CP*CP*GP*AP*GP*C)-3'), DNA (5'-D(P*AP*GP*CP*TP*CP*GP*GP*CP*T)-3'), DNA topoisomerase 2-beta, ... | 著者 | Chen, S.F, Wang, Y.R, Chan, N.L. | 登録日 | 2018-02-27 | 公開日 | 2018-08-08 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.75 Å) | 主引用文献 | Structural insights into the gating of DNA passage by the topoisomerase II DNA-gate. Nat Commun, 9, 2018
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6A5O
| RNA polymerase II elongation complex stalled at SHL(-6) of the nucleosome | 分子名称: | DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... | 著者 | Kujirai, T, Ehara, H, Fujino, Y, Shirouzu, M, Sekine, S, Kurumizaka, H. | 登録日 | 2018-06-25 | 公開日 | 2018-10-03 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (9.9 Å) | 主引用文献 | Structural basis of the nucleosome transition during RNA polymerase II passage. Science, 362, 2018
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6LA9
| 349 bp di-nucleosome harboring cohesive DNA termini assembled with linker histone H1.0 (high cryoprotectant) | 分子名称: | CALCIUM ION, DNA (349-MER), Histone H1.0, ... | 著者 | Adhireksan, Z, Sharma, D, Lee, P.L, Davey, C.A. | 登録日 | 2019-11-12 | 公開日 | 2020-10-07 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (3.7 Å) | 主引用文献 | Near-atomic resolution structures of interdigitated nucleosome fibres. Nat Commun, 11, 2020
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5ZBZ
| Crystal structure of the DEAD domain of Human eIF4A with sanguinarine | 分子名称: | 13-methyl[1,3]benzodioxolo[5,6-c][1,3]dioxolo[4,5-i]phenanthridin-13-ium, Eukaryotic initiation factor 4A-I, MALONATE ION | 著者 | Ding, Y, Ding, L. | 登録日 | 2018-02-14 | 公開日 | 2019-02-20 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.30860257 Å) | 主引用文献 | Targeting the N Terminus of eIF4AI for Inhibition of Its Catalytic Recycling. Cell Chem Biol, 26, 2019
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6L9Z
| 338 bp di-nucleosome assembled with linker histone H1.X | 分子名称: | CALCIUM ION, CHLORIDE ION, DNA (338-MER), ... | 著者 | Adhireksan, Z, Sharma, D, Lee, P.L, Davey, C.A. | 登録日 | 2019-11-11 | 公開日 | 2021-02-17 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Engineering nucleosomes for generating diverse chromatin assemblies. Nucleic Acids Res., 49, 2021
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6LAB
| 169 bp nucleosome, harboring cohesive DNA termini, assembled with linker histone H1.0 | 分子名称: | CALCIUM ION, CHLORIDE ION, DNA (169-MER), ... | 著者 | Adhireksan, Z, Sharma, D, Bao, Q, Lee, P.L, Padavattan, S, Davey, C.A. | 登録日 | 2019-11-12 | 公開日 | 2021-02-17 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (3.2 Å) | 主引用文献 | Engineering nucleosomes for generating diverse chromatin assemblies. Nucleic Acids Res., 49, 2021
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6LA2
| 343 bp di-nucleosome harboring cohesive DNA termini assembled with linker histone H1.0 | 分子名称: | DNA (343-MER), Histone H1.0, Histone H2A type 1-B/E, ... | 著者 | Adhireksan, Z, Sharma, D, Lee, P.L, Davey, C.A. | 登録日 | 2019-11-11 | 公開日 | 2021-02-17 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (3.89 Å) | 主引用文献 | Engineering nucleosomes for generating diverse chromatin assemblies. Nucleic Acids Res., 49, 2021
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6LER
| 169 bp nucleosome harboring non-identical cohesive DNA termini. | 分子名称: | CALCIUM ION, DNA (169-MER), Histone H2A type 1-B/E, ... | 著者 | Sharma, D, Adhireksan, Z, Lee, P.L, Davey, C.A. | 登録日 | 2019-11-26 | 公開日 | 2021-03-03 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Engineering nucleosomes for generating diverse chromatin assemblies. Nucleic Acids Res., 49, 2021
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5ZGC
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6M4G
| Structural mechanism of nucleosome dynamics governed by human histone variants H2A.B and H2A.Z.2.2 | 分子名称: | DNA (93-MER), Histone H2A-Bbd type 2/3, Histone H2B type 2-E, ... | 著者 | Zhou, M, Dai, L.C, Li, C.M, Shi, L.X, Huang, Y, Guo, Z.Q. | 登録日 | 2020-03-06 | 公開日 | 2020-09-23 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (2.8 Å) | 主引用文献 | Structural basis of nucleosome dynamics modulation by histone variants H2A.B and H2A.Z.2.2. Embo J., 40, 2021
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6M4H
| Structural mechanism of nucleosome dynamics governed by human histone variants H2A.B and H2A.Z.2.2 | 分子名称: | DNA (103-MER), Histone H2A-Bbd type 2/3, Histone H2B type 2-E, ... | 著者 | Zhou, M, Dai, L.C, Li, C.M, Shi, L.X, Huang, Y, Guo, Z.Q. | 登録日 | 2020-03-07 | 公開日 | 2020-09-23 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (3.9 Å) | 主引用文献 | Structural basis of nucleosome dynamics modulation by histone variants H2A.B and H2A.Z.2.2. Embo J., 40, 2021
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5Y0C
| Crystal Structure of the human nucleosome at 2.09 angstrom resolution | 分子名称: | CHLORIDE ION, DNA (146-MER), Histone H2A type 1-B/E, ... | 著者 | Kurumizaka, H, Arimura, Y, Fujita, R, Noda, M. | 登録日 | 2017-07-16 | 公開日 | 2018-07-18 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.087 Å) | 主引用文献 | Cancer-associated mutations of histones H2B, H3.1 and H2A.Z.1 affect the structure and stability of the nucleosome. Nucleic Acids Res., 46, 2018
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6M44
| 355 bp di-nucleosome harboring cohesive DNA termini (high cryoprotectant) | 分子名称: | CALCIUM ION, DNA (355-MER), Histone H2A type 1-B/E, ... | 著者 | Adhireksan, Z, Sharma, D, Lee, P.L, Davey, C.A. | 登録日 | 2020-03-05 | 公開日 | 2020-10-07 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (3.81 Å) | 主引用文献 | Near-atomic resolution structures of interdigitated nucleosome fibres. Nat Commun, 11, 2020
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5Z56
| cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom. | 分子名称: | 116 kDa U5 small nuclear ribonucleoprotein component, BUD13 homolog, Cell division cycle 5-like protein, ... | 著者 | Zhang, X, Yan, C, Zhan, X, Li, L, Lei, J, Shi, Y. | 登録日 | 2018-01-17 | 公開日 | 2018-09-19 | 最終更新日 | 2020-10-14 | 実験手法 | ELECTRON MICROSCOPY (5.1 Å) | 主引用文献 | Structure of the human activated spliceosome in three conformational states. Cell Res., 28, 2018
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