PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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5ZVA	APOBEC3F Chimeric Catalytic Domain in Complex with DNA(dC9) 分子名称: APEBEC3F/ssDNA-C9, CACODYLATE ION, DNA (5'-D(*AP*TP*TP*TP*TP*CP*AP*AP*CP*T)-3'), ... 著者 Cheng, C, Zhang, T.L, Wang, C.X, Lan, W.X, Ding, J.P, Cao, C.Y. 登録日 2018-05-09 公開日 2018-11-21 最終更新日 2018-11-28 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal Structure of Cytidine Deaminase Human APOBEC3F Chimeric Catalytic Domain in Complex with DNA Chin.J.Chem., 36, 2018
6UEQ	Structure of TBP bound to C-C mismatch containing TATA site 分子名称: DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*AP*CP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*C)-3'), SULFATE ION, ... 著者 Schumacher, M.A, Al-Hashimi, H. 登録日 2019-09-22 公開日 2020-09-02 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 DNA mismatches reveal conformational penalties in protein-DNA recognition. Nature, 587, 2020
1BC7	SERUM RESPONSE FACTOR ACCESSORY PROTEIN 1A (SAP-1)/DNA COMPLEX 分子名称: DNA (5'-D(*CP*AP*CP*AP*TP*CP*CP*TP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*AP*GP*GP*AP*TP*GP*TP*G)-3'), PROTEIN (ETS-DOMAIN PROTEIN) 著者 Mo, Y, Vaessen, B, Johnston, K, Marmorstein, R. 登録日 1998-05-05 公開日 1999-01-21 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.01 Å) 主引用文献 Structures of SAP-1 bound to DNA targets from the E74 and c-fos promoters: insights into DNA sequence discrimination by Ets proteins. Mol.Cell, 2, 1998
4R2D	Egr1/Zif268 zinc fingers in complex with formylated DNA 分子名称: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*(5FC)P*GP*T)-3'), DNA (5'-D(*TP*AP*(5FC)P*GP*CP*CP*CP*AP*CP*GP*C)-3'), Early growth response protein 1, ... 著者 Hashimoto, H, Olanrewaju, Y.O, Zheng, Y, Wilson, G.G, Zhang, X, Cheng, X. 登録日 2014-08-11 公開日 2014-10-08 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.088 Å) 主引用文献 Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence. Genes Dev., 28, 2014
4REB	Structural Insights into 5' Flap DNA Unwinding and Incision by the Human FAN1 Dimer 分子名称: DNA (5'-D(P*CP*GP*TP*GP*GP*CP*GP*AP*GP*CP*GP*CP*TP*CP*GP*CP*CP*AP*CP*G)-3'), DNA (5'-D(P*GP*CP*TP*CP*GP*CP*CP*AP*CP*G)-3'), DNA (5'-D(P*GP*TP*GP*GP*CP*GP*AP*GP*C)-3'), ... 著者 Zhao, Q, Xue, X, Longerich, S, Sung, P, Xiong, Y. 登録日 2014-09-22 公開日 2014-12-24 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (4.2 Å) 主引用文献 Structural insights into 5' flap DNA unwinding and incision by the human FAN1 dimer. Nat Commun, 5, 2014
4R2C	Egr1/Zif268 zinc fingers in complex with hydroxymethylated DNA 分子名称: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*(5HC)P*GP*T)-3'), DNA (5'-D(*TP*AP*(5HC)P*GP*CP*CP*CP*AP*CP*GP*C)-3'), Early growth response protein 1, ... 著者 Hashimoto, H, Olanrewaju, Y.O, Zheng, Y, Wilson, G.G, Zhang, X, Cheng, X. 登録日 2014-08-11 公開日 2014-10-08 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.89 Å) 主引用文献 Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence. Genes Dev., 28, 2014
4REA	A Nuclease DNA complex 分子名称: DNA (5'-D(*TP*GP*CP*TP*CP*GP*CP*CP*AP*C)-3'), DNA (5'-D(P*CP*GP*TP*GP*GP*CP*GP*AP*GP*C)-3'), DNA (5'-D(P*GP*GP*CP*GP*AP*GP*CP*GP*CP*TP*CP*GP*CP*CP*AP*CP*G)-3'), ... 著者 Zhao, Q, Xue, X, Longerich, S, Sung, P, Xiong, Y. 登録日 2014-09-22 公開日 2014-12-24 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.81 Å) 主引用文献 Structural insights into 5' flap DNA unwinding and incision by the human FAN1 dimer. Nat Commun, 5, 2014
4XRH	Human DNA polymerase lambda- MgdTTP binary and complex with 6 paired DNA 分子名称: DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(P*GP*TP*AP*CP*TP*G)-3'), DNA polymerase lambda, ... 著者 Liu, M.S, Tsai, M.D. 登録日 2015-01-21 公開日 2016-02-24 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda J.Am.Chem.Soc., 138, 2016
6NHX	mycobacterial DNA ligase D complexed with ATP and MES 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent DNA ligase 著者 Shuman, S, Unciuleac, M, Goldgur, Y. 登録日 2018-12-24 公開日 2019-02-13 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Structures of ATP-bound DNA ligase D in a closed domain conformation reveal a network of amino acid and metal contacts to the ATP phosphates. J. Biol. Chem., 294, 2019
6NHZ	mycobacterial DNA ligase D complexed with ATP and Mg 分子名称: ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent DNA ligase, MAGNESIUM ION 著者 Shuman, S, Unciuleac, M, Goldgur, Y. 登録日 2018-12-24 公開日 2019-02-13 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structures of ATP-bound DNA ligase D in a closed domain conformation reveal a network of amino acid and metal contacts to the ATP phosphates. J. Biol. Chem., 294, 2019
5ZG9	Crystal structure of MoSub1-ssDNA complex in phosphate buffer 分子名称: DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*G)-3'), MoSub1, PHOSPHATE ION 著者 Zhao, Y, Huang, J, Liu, H, Yi, L, Wang, S, Zhang, X, Liu, J. 登録日 2018-03-08 公開日 2019-03-27 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 The effect of phosphate ion on the ssDNA binding mode of MoSub1, a Sub1/PC4 homolog from rice blast fungus. Proteins, 87, 2019
6WGC	Atomic model of semi-attached mutant OCCM-DNA complex (ORC-Cdc6-Cdt1-Mcm2-7 with Mcm6 WHD truncation) 分子名称: Cell division control protein 6, DNA (41-MER), DNA replication licensing factor MCM3, ... 著者 Yuan, Z, Schneider, S, Dodd, T, Riera, A, Bai, L, Yan, C, Magdalou, I, Ivanov, I, Stillman, B, Li, H, Speck, C. 登録日 2020-04-05 公開日 2020-07-15 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 Structural mechanism of helicase loading onto replication origin DNA by ORC-Cdc6. Proc.Natl.Acad.Sci.USA, 117, 2020
6A57	Structure of histone demethylase REF6 complexed with DNA 分子名称: DNA (5'-D(*CP*TP*TP*TP*CP*TP*CP*TP*GP*TP*TP*TP*TP*GP*TP*C)-3'), DNA (5'-D(*GP*GP*AP*CP*AP*AP*AP*AP*CP*AP*GP*AP*GP*AP*AP*A)-3'), GLYCEROL, ... 著者 Tian, Z, Chen, Z. 登録日 2018-06-22 公開日 2019-06-26 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal structures of REF6 and its complex with DNA reveal diverse recognition mechanisms. Cell Discov, 6, 2020
1JB7	DNA G-Quartets in a 1.86 A Resolution Structure of an Oxytricha nova Telomeric Protein-DNA Complex 分子名称: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3', CHLORIDE ION, SODIUM ION, ... 著者 Horvath, M.P, Schultz, S.C. 登録日 2001-06-02 公開日 2001-06-11 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 DNA G-quartets in a 1.86 A resolution structure of an Oxytricha nova telomeric protein-DNA complex. J.Mol.Biol., 310, 2001
6UER	Crystal form 2: Structure of TBP bound to C-C mismatch at pH 7 分子名称: DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*CP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*CP*TP*TP*TP*AP*TP*AP*GP*C)-3'), TATA-box-binding protein 1 著者 Schumacher, M.A, Al-Hashimi, H. 登録日 2019-09-22 公開日 2020-09-02 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 DNA mismatches reveal conformational penalties in protein-DNA recognition. Nature, 587, 2020
3DFX	Opposite GATA DNA binding 分子名称: DNA (5'-D(*DAP*DAP*DGP*DGP*DTP*DTP*DAP*DTP*DCP*DTP*DCP*DTP*DGP*DAP*DTP*DTP*DTP*DAP*DTP*DC)-3'), DNA (5'-D(*DTP*DTP*DGP*DAP*DTP*DAP*DAP*DAP*DTP*DCP*DAP*DGP*DAP*DGP*DAP*DTP*DAP*DAP*DCP*DC)-3'), Trans-acting T-cell-specific transcription factor GATA-3, ... 著者 Bates, D.L, Kim, G.K, Guo, L, Chen, L. 登録日 2008-06-12 公開日 2008-07-29 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal structures of multiple GATA zinc fingers bound to DNA reveal new insights into DNA recognition and self-association by GATA. J.Mol.Biol., 381, 2008
1B8I	STRUCTURE OF THE HOMEOTIC UBX/EXD/DNA TERNARY COMPLEX 分子名称: DNA (5'-D(*AP*CP*GP*TP*GP*AP*TP*TP*TP*AP*TP*GP*GP*CP*G)-3'), DNA (5'-D(*GP*TP*CP*GP*CP*CP*AP*TP*AP*AP*AP*TP*CP*AP*C)-3'), PROTEIN (HOMEOBOX PROTEIN EXTRADENTICLE), ... 著者 Passner, J.M, Ryoo, H.-D, Shen, L, Mann, R.S, Aggarwal, A.K. 登録日 1999-02-01 公開日 1999-04-12 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structure of a DNA-bound Ultrabithorax-Extradenticle homeodomain complex. Nature, 397, 1999
4QTJ	Complex of WOPR domain of Wor1 in Candida albicans with the 13bp dsDNA 分子名称: DNA (5'-D(*AP*AP*AP*AP*GP*TP*TP*TP*AP*AP*CP*TP*T)-3'), DNA (5'-D(*AP*AP*GP*TP*TP*AP*AP*AP*CP*TP*TP*TP*T)-3'), White-opaque regulator 1 著者 Zhang, S, Zhang, T, Ding, J. 登録日 2014-07-08 公開日 2014-08-13 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of the WOPR-DNA complex and implications for Wor1 function in white-opaque switching of Candida albicans. Cell Res., 24, 2014
1HRY	THE 3D STRUCTURE OF THE HUMAN SRY-DNA COMPLEX SOLVED BY MULTID-DIMENSIONAL HETERONUCLEAR-EDITED AND-FILTERED NMR 分子名称: DNA (5'-D(*GP*CP*AP*CP*AP*AP*AP*C)-3'), DNA (5'-D(*GP*TP*TP*TP*GP*TP*GP*C)-3'), HUMAN SRY 著者 Clore, G.M, Werner, M.H, Huth, J.R, Gronenborn, A.M. 登録日 1995-05-09 公開日 1995-09-15 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Molecular basis of human 46X,Y sex reversal revealed from the three-dimensional solution structure of the human SRY-DNA complex. Cell(Cambridge,Mass.), 81, 1995
6MIH	Crystal structure of host-guest complex with PC hachimoji DNA 分子名称: DNA (5'-D(*CP*TP*TP*AP*(1WA)P*CP*(DB)P*T)-3'), DNA (5'-D(P*AP*(DS)P*GP*(1W5)P*TP*AP*AP*G)-3'), N-terminal fragment of MMLV reverse transcriptase 著者 Georgiadis, M.M. 登録日 2018-09-19 公開日 2019-02-27 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Hachimoji DNA and RNA: A genetic system with eight building blocks. Science, 363, 2019
6MIG	Crystal structure of host-guest complex with PB hachimoji DNA 分子名称: DNA (5'-D(*CP*TP*TP*AP*TP*(1WA)P*(1WA)P*(DS))-3'), DNA (5'-D(P*(DB)P*(1W5)P*(1W5)P*AP*TP*AP*AP*G)-3'), Gag-Pol polyprotein 著者 Georgiadis, M.M. 登録日 2018-09-19 公開日 2019-02-27 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Hachimoji DNA and RNA: A genetic system with eight building blocks. Science, 363, 2019
6MIK	Crystal structure of host-guest complex with PP hachimoji DNA 分子名称: DNA (5'-D(*CP*TP*TP*AP*TP*(1WA)P*(1WA)P*(DS))-3'), DNA (5'-D(P*(DB)P*(1W5)P*(1W5)P*AP*TP*AP*AP*G)-3'), N-terminal fragment of MMLV reverse transcriptase 著者 Georgiadis, M.M. 登録日 2018-09-19 公開日 2019-02-27 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Hachimoji DNA and RNA: A genetic system with eight building blocks. Science, 363, 2019
5DB7	Structure of human DNA polymerase beta Host-Guest complex with the N7MG base paired with a dT 分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*GP*TP*CP*GP*CP*AP*TP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*(FMG)P*AP*TP*GP*CP*GP*A)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... 著者 Koag, M.C, Lee, S. 登録日 2015-08-21 公開日 2015-11-11 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.209 Å) 主引用文献 N7 Methylation Alters Hydrogen-Bonding Patterns of Guanine in Duplex DNA. J.Am.Chem.Soc., 137, 2015
1LBG	LACTOSE OPERON REPRESSOR BOUND TO 21-BASE PAIR SYMMETRIC OPERATOR DNA, ALPHA CARBONS ONLY 分子名称: DNA (5'-D(*GP*AP*AP*TP*TP*GP*TP*GP*AP*GP*CP*GP*CP*TP*CP*AP*CP*AP*AP*TP*T)-3'), PROTEIN (LACTOSE OPERON REPRESSOR) 著者 Lewis, M, Chang, G, Horton, N.C, Kercher, M.A, Pace, H.C, Lu, P. 登録日 1996-01-03 公開日 1996-02-17 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (4.8 Å) 主引用文献 Crystal structure of the lactose operon repressor and its complexes with DNA and inducer. Science, 271, 1996
5DBA	Structure of human DNA polymerase beta Host-Guest complex with the dG base paired with a dT 分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*GP*TP*CP*GP*CP*AP*TP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... 著者 Koag, M.C, Lee, S. 登録日 2015-08-21 公開日 2015-11-11 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.965 Å) 主引用文献 N7 Methylation Alters Hydrogen-Bonding Patterns of Guanine in Duplex DNA. J.Am.Chem.Soc., 137, 2015

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