PDB: 37819 件ウェブページステータス検索Chemie searchBIRD

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5U7X	Crystal structure of a nucleoside triphosphate diphosphohydrolase (NTPDase) from the legume Vigna unguiculata subsp. cylindrica (Dolichos biflorus) in complex with phosphate and manganese 分子名称: MANGANESE (II) ION, Nod factor binding lectin-nucleotide phosphohydrolase, PHOSPHATE ION 著者 Cumming, M.H, Summers, E.L, Oulavallickal, T, Roberts, N, Arcus, V.L. 登録日 2016-12-12 公開日 2017-05-31 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structures and kinetics for plant nucleoside triphosphate diphosphohydrolases support a domain motion catalytic mechanism. Protein Sci., 26, 2017
5U9W	Structure of CNTnw N149L in the intermediate 3 state 分子名称: 2-{[(4-O-alpha-D-glucopyranosyl-beta-D-glucopyranosyl)oxy]methyl}-2-octyldecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, Nucleoside permease 著者 Hirschi, M, Johnson, Z.L, Lee, S.-Y. 登録日 2016-12-18 公開日 2017-04-12 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.555 Å) 主引用文献 Visualizing multistep elevator-like transitions of a nucleoside transporter. Nature, 545, 2017
2HVD	Human nucleoside diphosphate kinase A complexed with ADP 分子名称: ADENOSINE-5'-DIPHOSPHATE, Nucleoside diphosphate kinase A 著者 Giraud, M.-F, Georgescauld, F, Lascu, I, Dautant, A. 登録日 2006-07-28 公開日 2006-09-19 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Crystal Structures of S120G Mutant and Wild Type of Human Nucleoside Diphosphate Kinase A in Complex with ADP J.Bioenerg.Biomembr., 38, 2006
2VRD	THE STRUCTURE OF THE ZINC FINGER FROM THE HUMAN SPLICEOSOMAL PROTEIN U1C 分子名称: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C, ZINC ION 著者 Muto, Y, Pomeranz-Krummel, D, Oubridge, C, Hernandez, H, Robinson, C, Neuhaus, D, Nagai, K. 登録日 2008-03-31 公開日 2008-04-08 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 The Structure and Biochemical Properties of the Human Spliceosomal Protein U1C J.Mol.Biol., 341, 2004
1X8C	Crystal structure of the SeMet-derivative copper homeostasis protein (cutCm) with calcium binding from Shigella flexneri 2a str. 301 分子名称: CALCIUM ION, Copper homeostasis protein cutC 著者 Wang, D.C, Zhu, D.Y. 登録日 2004-08-18 公開日 2005-08-09 最終更新日 2017-10-11 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of the copper homeostasis protein (CutCm) from Shigella flexneri at 1.7 A resolution: the first structure of a new sequence family of TIM barrels Proteins, 58, 2005
1X7I	Crystal structure of the native copper homeostasis protein (cutCm) with calcium binding from Shigella flexneri 2a str. 301 分子名称: CALCIUM ION, Copper homeostasis protein cutC 著者 Zhu, D.Y, Zhu, Y.Q, Huang, R.H, Xiang, Y, Wang, D.C. 登録日 2004-08-14 公開日 2005-03-01 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Crystal structure of the copper homeostasis protein (CutCm) from Shigella flexneri at 1.7 A resolution: The first structure of a new sequence family of TIM barrels Proteins, 58, 2004
2HVE	S120G mutant of human nucleoside diphosphate kinase A complexed with ADP 分子名称: ADENOSINE-5'-DIPHOSPHATE, Nucleoside diphosphate kinase A 著者 Giraud, M.-F, Georgescauld, F, Lascu, I, Dautant, A. 登録日 2006-07-28 公開日 2006-09-19 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.402 Å) 主引用文献 Crystal Structures of S120G Mutant and Wild Type of Human Nucleoside Diphosphate Kinase A in Complex with ADP J.Bioenerg.Biomembr., 38, 2006
3FBB	Crystal structure of the Mimivirus NDK N62L-R107G double mutant complexed with UDP 分子名称: MAGNESIUM ION, Nucleoside diphosphate kinase, URIDINE-5'-DIPHOSPHATE 著者 Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C. 登録日 2008-11-19 公開日 2009-08-11 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase. J.Virol., 83, 2009
4XHM	Archaeoglobus fulgidus thioredoxin 3 M60H 分子名称: Thioredoxin (Trx-3) 著者 Dey, M, Bjork, R.E, Drennan, C.L. 登録日 2015-01-05 公開日 2015-04-29 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Rheostat Re-Wired: Alternative Hypotheses for the Control of Thioredoxin Reduction Potentials. Plos One, 10
7YDQ	Structure of PfNT1(Y190A)-GFP in complex with GSK4 分子名称: 5-methyl-N-[2-(2-oxidanylideneazepan-1-yl)ethyl]-2-phenyl-1,3-oxazole-4-carboxamide, Nucleoside transporter 1,Green fluorescent protein 著者 Wang, C, Yu, L.Y, Li, J.L, Ren, R.B, Deng, D. 登録日 2022-07-04 公開日 2023-04-26 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (4.04 Å) 主引用文献 Structural basis of the substrate recognition and inhibition mechanism of Plasmodium falciparum nucleoside transporter PfENT1. Nat Commun, 14, 2023
3EVW	Crystal structure of the Mimivirus NDK R107G mutant complexed with dTDP 分子名称: MAGNESIUM ION, Nucleoside diphosphate kinase, THYMIDINE-5'-DIPHOSPHATE 著者 Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C. 登録日 2008-10-13 公開日 2009-08-11 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase. J.Virol., 83, 2009
3FCW	Crystal structure of the Mimivirus NDK N62L mutant complexed with UDP 分子名称: MAGNESIUM ION, Nucleoside diphosphate kinase, URIDINE-5'-DIPHOSPHATE 著者 Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C. 登録日 2008-11-23 公開日 2009-08-11 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase. J.Virol., 83, 2009
3FBF	Crystal structure of the Mimivirus NDK N62L mutant complexed with dTDP 分子名称: MAGNESIUM ION, Nucleoside diphosphate kinase, THYMIDINE-5'-DIPHOSPHATE 著者 Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C. 登録日 2008-11-19 公開日 2009-08-11 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase. J.Virol., 83, 2009
3FWP	X-ray structure of uridine nucleoside phosphorylease from Salmonella typhimurium complexed with phosphate and its inhibitor 2,2'-anhydrouridine at 1.86 A resolution 分子名称: 2,2'-Anhydro-(1-beta-D-arabinofuranosyl)uracil, PHOSPHATE ION, POTASSIUM ION, ... 著者 Lashkov, S.A, Mikhailov, A.M, Gabdulkhakov, A.G. 登録日 2009-01-19 公開日 2010-01-19 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 The X-ray structure of Salmonella typhimurium uridine nucleoside phosphorylase complexed with 2,2'-anhydrouridine, phosphate and potassium ions at 1.86 A resolution. Acta Crystallogr.,Sect.D, 66, 2010
3G2X	Structure of mimivirus NDK +Kpn - N62L double mutant complexed with dTDP 分子名称: MAGNESIUM ION, Nucleoside diphosphate kinase, THYMIDINE-5'-DIPHOSPHATE 著者 Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C. 登録日 2009-02-01 公開日 2009-08-11 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase. J.Virol., 83, 2009
7A5P	Human C Complex Spliceosome - Medium-resolution PERIPHERY 分子名称: Cell division cycle 5-like protein, Crooked neck-like protein 1, Eukaryotic initiation factor 4A-III, ... 著者 Bertram, K, Kastner, B. 登録日 2020-08-21 公開日 2020-10-14 最終更新日 2024-10-09 実験手法 ELECTRON MICROSCOPY (5 Å) 主引用文献 Structural Insights into the Roles of Metazoan-Specific Splicing Factors in the Human Step 1 Spliceosome. Mol.Cell, 80, 2020
3EVM	Crystal structure of the Mimivirus NDK +Kpn-N62L-R107G triple mutant complexed with dCDP 分子名称: DEOXYCYTIDINE DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase 著者 Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C. 登録日 2008-10-13 公開日 2009-08-11 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase. J.Virol., 83, 2009
1NW3	Structure of the Catalytic domain of human DOT1L, a non-SET domain nucleosomal histone methyltransferase 分子名称: ACETATE ION, S-ADENOSYLMETHIONINE, SULFATE ION, ... 著者 Min, J.R, Feng, Q, Li, Z.H, Zhang, Y, Xu, R.M. 登録日 2003-02-05 公開日 2003-03-25 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure of the Catalytic domain of human DOT1L, a non-SET domain nucleosomal histone methyltransferase Cell(Cambridge,Mass.), 112, 2003
3GP9	Crystal structure of the Mimivirus NDK complexed with GDP 分子名称: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase, ... 著者 Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C. 登録日 2009-03-23 公開日 2009-08-11 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase. J.Virol., 83, 2009
3GPA	Crystal structure of the Mimivirus NDK N62L mutant complexed with CDP 分子名称: CYTIDINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase, ... 著者 Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C. 登録日 2009-03-23 公開日 2009-08-11 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase. J.Virol., 83, 2009
3FBC	Crystal structure of the Mimivirus NDK N62L-R107G double mutant complexed with dTDP 分子名称: MAGNESIUM ION, Nucleoside diphosphate kinase, PHOSPHATE ION, ... 著者 Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C. 登録日 2008-11-19 公開日 2009-08-11 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase. J.Virol., 83, 2009
3FBE	Crystal structure of the Mimivirus NDK N62L-R107G double mutant complexed with GDP 分子名称: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase 著者 Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C. 登録日 2008-11-19 公開日 2009-06-16 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase. J.Virol., 83, 2009
1LPW	Solution structure of the yeast spliceosomal U2 snRNA-intron branch site helix featuring a conserved pseudouridine 分子名称: 5'-R(*GP*GP*UP*GP*(PSU)P*AP*GP*UP*A)-3', 5'-R(*UP*AP*CP*UP*AP*AP*CP*AP*CP*C)-3' 著者 Newby, M.I, Greenbaum, N.L. 登録日 2002-05-08 公開日 2002-11-27 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Sculpting of the Spliceosomal Branch Site Recognition Motif by a Conserved Pseudouridine Nat.Struct.Biol., 12, 2002
1MDR	THE ROLE OF LYSINE 166 IN THE MECHANISM OF MANDELATE RACEMASE FROM PSEUDOMONAS PUTIDA: MECHANISTIC AND CRYSTALLOGRAPHIC EVIDENCE FOR STEREOSPECIFIC ALKYLATION BY (R)-ALPHA-PHENYLGLYCIDATE 分子名称: ATROLACTIC ACID (2-PHENYL-LACTIC ACID), MAGNESIUM ION, MANDELATE RACEMASE 著者 Landro, J.A, Gerlt, J.A, Kozarich, J.W, Koo, C.W, Shah, V.J, Kenyon, G.L, Neidhart, D.J, Fujita, S, Petsko, G.A. 登録日 1993-11-19 公開日 1994-08-31 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 The role of lysine 166 in the mechanism of mandelate racemase from Pseudomonas putida: mechanistic and crystallographic evidence for stereospecific alkylation by (R)-alpha-phenylglycidate. Biochemistry, 33, 1994
6UPL	Structure of FACT_subnucleosome complex 2 分子名称: DNA (79-mer), FACT complex subunit SPT16, FACT complex subunit SSRP1, ... 著者 Zhou, K, Tan, Y.Z, Wei, H, Liu, Y, Carragher, B, Potter, C, Luger, K. 登録日 2019-10-17 公開日 2019-12-11 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (7.4 Å) 主引用文献 FACT caught in the act of manipulating the nucleosome. Nature, 577, 2020

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