PDB: 37932 件ウェブページステータス検索Chemie searchBIRD

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5U7X	Crystal structure of a nucleoside triphosphate diphosphohydrolase (NTPDase) from the legume Vigna unguiculata subsp. cylindrica (Dolichos biflorus) in complex with phosphate and manganese 分子名称: MANGANESE (II) ION, Nod factor binding lectin-nucleotide phosphohydrolase, PHOSPHATE ION 著者 Cumming, M.H, Summers, E.L, Oulavallickal, T, Roberts, N, Arcus, V.L. 登録日 2016-12-12 公開日 2017-05-31 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structures and kinetics for plant nucleoside triphosphate diphosphohydrolases support a domain motion catalytic mechanism. Protein Sci., 26, 2017
5U7V	Crystal structure of a nucleoside triphosphate diphosphohydrolase (NTPDase) from the legume Trifolium repens in complex with AMP 分子名称: ADENOSINE MONOPHOSPHATE, Apyrase 著者 Cumming, M.H, Summers, E.L, Oulavallickal, T, Roberts, N, Arcus, V.L. 登録日 2016-12-12 公開日 2017-05-31 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structures and kinetics for plant nucleoside triphosphate diphosphohydrolases support a domain motion catalytic mechanism. Protein Sci., 26, 2017
7YDQ	Structure of PfNT1(Y190A)-GFP in complex with GSK4 分子名称: 5-methyl-N-[2-(2-oxidanylideneazepan-1-yl)ethyl]-2-phenyl-1,3-oxazole-4-carboxamide, Nucleoside transporter 1,Green fluorescent protein 著者 Wang, C, Yu, L.Y, Li, J.L, Ren, R.B, Deng, D. 登録日 2022-07-04 公開日 2023-04-26 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (4.04 Å) 主引用文献 Structural basis of the substrate recognition and inhibition mechanism of Plasmodium falciparum nucleoside transporter PfENT1. Nat Commun, 14, 2023
5T3K	Fluorescence detection of RNA-ligand binding and crystal structure determination of ribosomal decoding site RNA using a heavy atom containing fluorescent ribonucleoside 分子名称: MAGNESIUM ION, RNA (5'-R(*CP*AP*GP*CP*GP*(75B)P*CP*AP*CP*AP*CP*CP*AP*CP*CP*C)-3'), RNA (5'-R(*GP*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*UP*GP*G)-3') 著者 Hermann, T, Boerneke, M.A. 登録日 2016-08-25 公開日 2017-07-05 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.142 Å) 主引用文献 Structure of the Ribosomal RNA Decoding Site Containing a Selenium-Modified Responsive Fluorescent Ribonucleoside Probe. Angew. Chem. Int. Ed. Engl., 56, 2017
7A5P	Human C Complex Spliceosome - Medium-resolution PERIPHERY 分子名称: Cell division cycle 5-like protein, Crooked neck-like protein 1, Eukaryotic initiation factor 4A-III, ... 著者 Bertram, K, Kastner, B. 登録日 2020-08-21 公開日 2020-10-14 最終更新日 2024-10-09 実験手法 ELECTRON MICROSCOPY (5 Å) 主引用文献 Structural Insights into the Roles of Metazoan-Specific Splicing Factors in the Human Step 1 Spliceosome. Mol.Cell, 80, 2020
6FTF	Regulatory subunit of a cAMP-independent protein kinase A from Trypanosoma cruzi at 1.09 A resolution 分子名称: 1,2-ETHANEDIOL, 7-cyano-7-deazainosine, Protein kinase A regulatory subunit, ... 著者 Volpato Santos, Y, Lorentzen, E, Basquin, J, Boshart, M. 登録日 2018-02-21 公開日 2019-04-03 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.09151936 Å) 主引用文献 Nucleoside analogue activators of cyclic AMP-independent protein kinase A of Trypanosoma. Nat Commun, 10, 2019
5U7P	Crystal structure of a nucleoside triphosphate diphosphohydrolase (NTPDase) from the legume Trifolium repens 分子名称: Apyrase, PHOSPHATE ION 著者 Cumming, M.H, Summers, E.L, Oulavallickal, T, Roberts, N, Arcus, V.L. 登録日 2016-12-12 公開日 2017-05-31 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (1.89 Å) 主引用文献 Structures and kinetics for plant nucleoside triphosphate diphosphohydrolases support a domain motion catalytic mechanism. Protein Sci., 26, 2017
5U7W	Crystal structure of a nucleoside triphosphate diphosphohydrolase (NTPDase) from the legume Trifolium repens in complex with adenine and phosphate 分子名称: ADENINE, Apyrase, PHOSPHATE ION 著者 Cumming, M.H, Summers, E.L, Oulavallickal, T, Roberts, N, Arcus, V.L. 登録日 2016-12-12 公開日 2017-05-31 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 Structures and kinetics for plant nucleoside triphosphate diphosphohydrolases support a domain motion catalytic mechanism. Protein Sci., 26, 2017
2M62	Solution Structure of a Chi/Lambda Conotoxin fron Conus araneosus 分子名称: Chi-conotoxin-like Ar1248 著者 Sarma, S.P, Ganesan, S, Gowd K, H, Padmanabhan, B. 登録日 2013-03-19 公開日 2014-04-16 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Solution Structure of Ar1248, a Chi/Lambda conotoxin from Conus araneosus To Be Published
6ZHX	Cryo-EM structure of the regulatory linker of ALC1 bound to the nucleosome's acidic patch: nucleosome class. 分子名称: Chromodomain-helicase-DNA-binding protein 1-like, DNA (145-MER) Widom 601 sequence, Histone H2A type 1, ... 著者 Bacic, L, Gaullier, G, Croll, T.I, Deindl, S. 登録日 2020-06-24 公開日 2020-12-23 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (2.5 Å) 主引用文献 Mechanistic Insights into Regulation of the ALC1 Remodeler by the Nucleosome Acidic Patch. Cell Rep, 33, 2020
3KXB	Structural characterization of H3K56Q nucleosomes and nucleosomal arrays 分子名称: Histone H2A, Histone H2B 1.1, Histone H3.2, ... 著者 Clark, N.J, Lilyestrom, W.G. 登録日 2009-12-02 公開日 2010-06-23 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structural characterization of H3K56Q nucleosomes and nucleosomal arrays. Biochim.Biophys.Acta, 1799, 2010
6ODL	Crystal structure of GluN2A agonist binding domain with 4-butyl-(S)-CCG-IV 分子名称: (1S,2R)-2-[(S)-amino(carboxy)methyl]-1-butylcyclopropane-1-carboxylic acid, Glutamate receptor ionotropic, NMDA 2A,Glutamate receptor ionotropic, ... 著者 Mou, T.C, Clausen, R.P, Sprang, S.R, Hansen, K.B. 登録日 2019-03-26 公開日 2020-04-01 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Stereoselective synthesis of novel 2'-(S)-CCG-IV analogues as potent NMDA receptor agonists. Eur.J.Med.Chem., 212, 2021
3MPD	Crystal structure of nucleoside diphosphate kinase from encephalitozoon cuniculi, cubic form, apo 分子名称: 1,2-ETHANEDIOL, Nucleoside diphosphate kinase 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2010-04-26 公開日 2010-05-12 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.08 Å) 主引用文献 Crystal structure of nucleoside diphosphate kinase from encephalitozoon cuniculi To be published
3JB9	Cryo-EM structure of the yeast spliceosome at 3.6 angstrom resolution 分子名称: ADENOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... 著者 Yan, C, Hang, J, Wan, R, Huang, M, Wong, C, Shi, Y. 登録日 2015-08-09 公開日 2015-09-23 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structure of a yeast spliceosome at 3.6-angstrom resolution Science, 349, 2015
3KWQ	Structural characterization of H3K56Q nucleosomes and nucleosomal arrays 分子名称: DNA (146-MER), Histone H2A, Histone H2B 1.1, ... 著者 Lilyestrom, W.G, Clark, N. 登録日 2009-12-01 公開日 2010-05-12 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Structural characterization of H3K56Q nucleosomes and nucleosomal arrays. Biochim.Biophys.Acta, 1799
3EVW	Crystal structure of the Mimivirus NDK R107G mutant complexed with dTDP 分子名称: MAGNESIUM ION, Nucleoside diphosphate kinase, THYMIDINE-5'-DIPHOSPHATE 著者 Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C. 登録日 2008-10-13 公開日 2009-08-11 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase. J.Virol., 83, 2009
3FCW	Crystal structure of the Mimivirus NDK N62L mutant complexed with UDP 分子名称: MAGNESIUM ION, Nucleoside diphosphate kinase, URIDINE-5'-DIPHOSPHATE 著者 Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C. 登録日 2008-11-23 公開日 2009-08-11 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase. J.Virol., 83, 2009
1TWD	Crystal Structure of the Putative Copper Homeostasis Protein (CutC) from Shigella flexneri, Northeast Structural Genomics Target SfR33 分子名称: Copper homeostasis protein cutC 著者 Forouhar, F, Lee, I, Vorobiev, S.M, Ma, L.-C, Shastry, R, Conover, K, Xiao, R, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG) 登録日 2004-06-30 公開日 2004-07-20 最終更新日 2017-10-11 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Crystal Structure of the Putative Copper Homeostasis Protein (CutC) from Shigella flexneri, Northeast Structural Genomics Target SfR33 To be Published
3FBB	Crystal structure of the Mimivirus NDK N62L-R107G double mutant complexed with UDP 分子名称: MAGNESIUM ION, Nucleoside diphosphate kinase, URIDINE-5'-DIPHOSPHATE 著者 Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C. 登録日 2008-11-19 公開日 2009-08-11 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase. J.Virol., 83, 2009
3FBF	Crystal structure of the Mimivirus NDK N62L mutant complexed with dTDP 分子名称: MAGNESIUM ION, Nucleoside diphosphate kinase, THYMIDINE-5'-DIPHOSPHATE 著者 Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C. 登録日 2008-11-19 公開日 2009-08-11 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase. J.Virol., 83, 2009
3FBE	Crystal structure of the Mimivirus NDK N62L-R107G double mutant complexed with GDP 分子名称: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase 著者 Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C. 登録日 2008-11-19 公開日 2009-06-16 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase. J.Virol., 83, 2009
3FBC	Crystal structure of the Mimivirus NDK N62L-R107G double mutant complexed with dTDP 分子名称: MAGNESIUM ION, Nucleoside diphosphate kinase, PHOSPHATE ION, ... 著者 Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C. 登録日 2008-11-19 公開日 2009-08-11 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase. J.Virol., 83, 2009
1MDR	THE ROLE OF LYSINE 166 IN THE MECHANISM OF MANDELATE RACEMASE FROM PSEUDOMONAS PUTIDA: MECHANISTIC AND CRYSTALLOGRAPHIC EVIDENCE FOR STEREOSPECIFIC ALKYLATION BY (R)-ALPHA-PHENYLGLYCIDATE 分子名称: ATROLACTIC ACID (2-PHENYL-LACTIC ACID), MAGNESIUM ION, MANDELATE RACEMASE 著者 Landro, J.A, Gerlt, J.A, Kozarich, J.W, Koo, C.W, Shah, V.J, Kenyon, G.L, Neidhart, D.J, Fujita, S, Petsko, G.A. 登録日 1993-11-19 公開日 1994-08-31 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 The role of lysine 166 in the mechanism of mandelate racemase from Pseudomonas putida: mechanistic and crystallographic evidence for stereospecific alkylation by (R)-alpha-phenylglycidate. Biochemistry, 33, 1994
3FWP	X-ray structure of uridine nucleoside phosphorylease from Salmonella typhimurium complexed with phosphate and its inhibitor 2,2'-anhydrouridine at 1.86 A resolution 分子名称: 2,2'-Anhydro-(1-beta-D-arabinofuranosyl)uracil, PHOSPHATE ION, POTASSIUM ION, ... 著者 Lashkov, S.A, Mikhailov, A.M, Gabdulkhakov, A.G. 登録日 2009-01-19 公開日 2010-01-19 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 The X-ray structure of Salmonella typhimurium uridine nucleoside phosphorylase complexed with 2,2'-anhydrouridine, phosphate and potassium ions at 1.86 A resolution. Acta Crystallogr.,Sect.D, 66, 2010
4FKY	Crystal structure of nucleoside diphosphate kinase B from Trypanosoma brucei bound to GTP 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2012-06-13 公開日 2012-06-27 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Crystal structure of nucleoside diphosphate kinase B from Trypanosma brucei bound to GTP To be Published

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