PDB: 10243 件ウェブページステータス検索Chemie searchBIRD

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8RAP	Structure of Sen1-ADP.BeF3 bound RNA Polymerase II pre-termination complex 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ... 著者 Rengachari, S, Lidscreiber, M, Cramer, P. 登録日 2023-12-01 公開日 2024-10-30 最終更新日 2025-02-26 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 Mechanism of polyadenylation-independent RNA polymerase II termination. Nat.Struct.Mol.Biol., 32, 2025
8RAM	Structure of Sen1 bound RNA Polymerase II pre-termination complex 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Rengachari, S, Lidscreiber, M, Cramer, P. 登録日 2023-12-01 公開日 2024-10-30 最終更新日 2025-07-02 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Mechanism of polyadenylation-independent RNA polymerase II termination. Nat.Struct.Mol.Biol., 32, 2025
5FMF	the P-lobe of RNA polymerase II pre-initiation complex 分子名称: DNA REPAIR HELICASE RAD25, SSL2, DNA REPAIR HELICASE RAD3, ... 著者 Murakami, K, Tsai, K, Kalisman, N, Bushnell, D.A, Asturias, F.J, Kornberg, R.D. 登録日 2015-11-03 公開日 2015-11-25 最終更新日 2024-11-20 実験手法 ELECTRON MICROSCOPY (6 Å) 主引用文献 Structure of an RNA Polymerase II Pre-Initiation Complex Proc.Natl.Acad.Sci.USA, 112, 2015
6I84	Structure of transcribing RNA polymerase II-nucleosome complex 分子名称: DNA (158-MER), DNA (170-MER), DNA-directed RNA polymerase II subunit RPB1, ... 著者 Farnung, L, Vos, S.M, Cramer, P. 登録日 2018-11-19 公開日 2019-01-02 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 Structure of transcribing RNA polymerase II-nucleosome complex. Nat Commun, 9, 2018
8CEN	Yeast RNA polymerase II transcription pre-initiation complex with core Mediator 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Wang, H, Schilbach, S, Cramer, P. 登録日 2023-02-02 公開日 2023-03-22 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Yeast PIC-Mediator structure with RNA polymerase II C-terminal domain. Proc.Natl.Acad.Sci.USA, 120, 2023
4Y7N	The Structure Insight into 5-Carboxycytosine Recognition by RNA Polymerase II during Transcription Elongation. 分子名称: DNA (29-MER), DNA (5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, ... 著者 Wang, L, Chong, J, Wang, D. 登録日 2015-02-15 公開日 2015-07-15 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Molecular basis for 5-carboxycytosine recognition by RNA polymerase II elongation complex. Nature, 523, 2015
4X6A	Crystal structure of yeast RNA polymerase II encountering oxidative Cyclopurine DNA lesions 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Wang, L, Chong, J, Wang, D. 登録日 2014-12-07 公開日 2015-02-04 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (3.96 Å) 主引用文献 Mechanism of RNA polymerase II bypass of oxidative cyclopurine DNA lesions. Proc.Natl.Acad.Sci.USA, 112, 2015
4Y52	Crystal structure of 5-Carboxycytosine Recognition by RNA Polymerase II during Transcription Elongation. 分子名称: DNA (29-MER), DNA (5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, ... 著者 Wang, L, Chong, J, Wang, D. 登録日 2015-02-11 公開日 2015-07-15 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Molecular basis for 5-carboxycytosine recognition by RNA polymerase II elongation complex. Nature, 523, 2015
4X67	Crystal structure of elongating yeast RNA polymerase II stalled at oxidative Cyclopurine DNA lesions. 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Wang, L, Chong, J, Wang, D. 登録日 2014-12-07 公開日 2015-02-04 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (4.1 Å) 主引用文献 Mechanism of RNA polymerase II bypass of oxidative cyclopurine DNA lesions. Proc.Natl.Acad.Sci.USA, 112, 2015
8QSZ	Structure of s. pombe RNA polymerase II in complex with DSIF and Rat1/Rai1 分子名称: 5'-3' exoribonuclease 2, DNA none template (34-MER), DNA template (40-MER), ... 著者 Carrique, L, Kus, K, Vasiljeva, L, Grimes, J.M. 登録日 2023-10-12 公開日 2024-10-23 最終更新日 2025-01-22 実験手法 ELECTRON MICROSCOPY (2.67 Å) 主引用文献 DSIF factor Spt5 coordinates transcription, maturation and exoribonucleolysis of RNA polymerase II transcripts. Nat Commun, 16, 2025
5OIK	Structure of an RNA polymerase II-DSIF transcription elongation complex 分子名称: DNA (43-MER), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Bernecky, C, Plitzko, J.M, Cramer, P. 登録日 2017-07-18 公開日 2017-09-13 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp. Nat. Struct. Mol. Biol., 24, 2017
8U9R	STRUCTURAL BASIS OF TRANSCRIPTION: RNA POLYMERASE II SUBSTRATE BINDING AND METAL COORDINATION USING A FREE-ELECTRON LASER 分子名称: ADENOSINE-5'-TRIPHOSPHATE, DNA (5'-D(P*CP*AP*CP*GP*TP*CP*CP*CP*TP*CP*TP*CP*GP*A)-3'), DNA-directed RNA polymerase II subunit RPB1, ... 著者 Arjunan, P, Calero, G, Kaplan, C.D. 登録日 2023-09-20 公開日 2024-09-18 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (3.34 Å) 主引用文献 Structural basis of transcription: RNA polymerase II substrate binding and metal coordination using a free-electron laser. Proc.Natl.Acad.Sci.USA, 121, 2024
5C4X	Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubble 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Barnes, C.O, Calero, M, Malik, I, Spahr, H, Zhang, Q, Pullara, F, Kaplan, C.D, Calero, G. 登録日 2015-06-18 公開日 2015-08-26 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (4 Å) 主引用文献 Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble. Mol.Cell, 59, 2015
5C4A	Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubble 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Barnes, C.O, Calero, M, Malik, I, Saphr, H, Zhang, Q, Pullara, F, Kaplan, C.D, Calero, G. 登録日 2015-06-17 公開日 2015-08-26 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (4.2 Å) 主引用文献 Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble. Mol.Cell, 59, 2015
5C3E	Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubble 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Barnes, C.O, Calero, M, Malik, I, Spahr, H, Zhang, Q, Pullara, F, Kaplan, C.D, Calero, G. 登録日 2015-06-17 公開日 2015-08-26 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.7 Å) 主引用文献 Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble. Mol.Cell, 59, 2015
5C44	Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubble 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Barnes, C.O, Calero, M, Malik, I, Spahr, H, Zhang, Q, Pullara, F, Kaplan, C.D, Calero, G. 登録日 2015-06-17 公開日 2015-08-26 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (3.95 Å) 主引用文献 Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble. Mol.Cell, 59, 2015
6XRE	Structure of the p53/RNA polymerase II assembly 分子名称: Cellular tumor antigen p53, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11-a, ... 著者 Liou, S.-H, Singh, S, Singer, R.H, Coleman, R.A, Liu, W. 登録日 2020-07-12 公開日 2021-03-24 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (4.6 Å) 主引用文献 Structure of the p53/RNA polymerase II assembly. Commun Biol, 4, 2021
7O4J	Yeast RNA polymerase II transcription pre-initiation complex (consensus) 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ... 著者 Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P. 登録日 2021-04-06 公開日 2021-06-16 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening. Cell, 184, 2021
7O4I	Yeast RNA polymerase II transcription pre-initiation complex with initial transcription bubble 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ... 著者 Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P. 登録日 2021-04-06 公開日 2021-06-16 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening. Cell, 184, 2021
7O73	Yeast RNA polymerase II transcription pre-initiation complex with closed distorted promoter DNA 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ... 著者 Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P. 登録日 2021-04-12 公開日 2021-06-16 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening. Cell, 184, 2021
7O75	Yeast RNA polymerase II transcription pre-initiation complex with open promoter DNA 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ... 著者 Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P. 登録日 2021-04-13 公開日 2021-06-16 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening. Cell, 184, 2021
7O72	Yeast RNA polymerase II transcription pre-initiation complex with closed promoter DNA 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ... 著者 Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P. 登録日 2021-04-12 公開日 2021-06-16 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening. Cell, 184, 2021
9J0P	Arrested elongation complex of mammalian RNA polymerase II with nucleosome (AEC2-nuc) 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB11-a, ... 著者 Naganuma, M, Kujirai, T, Ehara, H, Uejima, T, Ito, T, Goto, M, Aoki, M, Henmi, M, Miyamoto-Kohno, S, Shirouzu, M, Kurumizaka, H, Sekine, S. 登録日 2024-08-02 公開日 2025-02-05 最終更新日 2025-07-02 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Structural insights into promoter-proximal pausing of RNA polymerase II at +1 nucleosome. Sci Adv, 11, 2025
9J0N	Paused elongation complex of mammalian RNA polymerase II with nucleosome (PEC2-nuc) 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB11-a, ... 著者 Naganuma, M, Kujirai, T, Ehara, H, Uejima, T, Ito, T, Goto, M, Aoki, M, Henmi, M, Miyamoto-Kohno, S, Shirouzu, M, Kurumizaka, H, Sekine, S. 登録日 2024-08-02 公開日 2025-02-05 最終更新日 2025-06-18 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structural insights into promoter-proximal pausing of RNA polymerase II at +1 nucleosome. Sci Adv, 11, 2025
9J0O	Arrested elongation complex of mammalian RNA polymerase II with nucleosome (AEC1-nuc) 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB11-a, ... 著者 Naganuma, M, Kujirai, T, Ehara, H, Uejima, T, Ito, T, Goto, M, Aoki, M, Henmi, M, Miyamoto-Kohno, S, Shirouzu, M, Kurumizaka, H, Sekine, S. 登録日 2024-08-02 公開日 2025-02-05 最終更新日 2025-06-18 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Structural insights into promoter-proximal pausing of RNA polymerase II at +1 nucleosome. Sci Adv, 11, 2025

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