PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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2JR1	Solution structure of the DNA binding domain of a nucleoid-associated protein, H-NS, from the phytopathogen Xylella fastidiosa. 分子名称: Virulence regulator 著者 Rosselli, L.K, Sforca, M.L, Souza, A.P, Zeri, A.C. 登録日 2007-06-18 公開日 2007-09-25 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution structure of the DNA binding domain of a nucleoid-associated protein, H-NS, from the phytopathogen Xylella fastidiosa. To be Published
5A39	Structure of Rad14 in complex with cisplatin containing DNA 分子名称: 5'-D(*DGP*AP*TP*GP*AP*CP*CP*GP*TP*AP*GP*AP*GP)-3', 5'-D(*DTP*GP*AP*TP*GP*AP*CP*CP*GP*TP*AP*GP*AP)-3', Cisplatin, ... 著者 Koch, S.C, Kuper, J, Gasteiger, K.L, Wichlein, N, Strasser, R, Eisen, D, Geiger, S, Schneider, S, Kisker, C, Carell, T. 登録日 2015-05-28 公開日 2015-06-24 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural Insights Into the Recognition of Cisplatin and Aaf-Dg Lesion by Rad14 (Xpa). Proc.Natl.Acad.Sci.USA, 112, 2015
6I89	Crystal structure of Antirestriction ArdC protein from R388 plasmid. Metal-free structure. 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ArdC protein 著者 Gonzalez-Montes, L, Moncalian, G. 登録日 2018-11-19 公開日 2020-03-18 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 ArdC, a ssDNA-binding protein with a metalloprotease domain, overpasses the recipient hsdRMS restriction system broadening conjugation host range. Plos Genet., 16, 2020
6GRD	eukaryotic junction-resolving enzyme GEN-1 binding with Cesium 分子名称: CESIUM ION, DNA (5'-D(*TP*AP*CP*CP*CP*AP*CP*CP*AP*CP*CP*GP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*T)-3'), ... 著者 Lilley, D.M.J, Liu, Y, Freeman, D.J. 登録日 2018-06-11 公開日 2018-09-26 最終更新日 2018-11-28 実験手法 X-RAY DIFFRACTION (2.66 Å) 主引用文献 A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1. Nucleic Acids Res., 46, 2018
1ZTT	Netropsin bound to d(CTTAATTCGAATTAAG) in complex with MMLV RT catalytic fragment 分子名称: 5'-D(*CP*TP*TP*AP*AP*TP*TP*C)-3', 5'-D(P*GP*AP*AP*TP*TP*AP*AP*G)-3', NETROPSIN, ... 著者 Goodwin, K.D, Long, E.C, Georgiadis, M.M. 登録日 2005-05-27 公開日 2005-08-30 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 A host-guest approach for determining drug-DNA interactions: an example using netropsin. Nucleic Acids Res., 33, 2005
6GVW	Crystal structure of the BRCA1-A complex 分子名称: BRCA1-A complex subunit Abraxas 1, BRCA1-A complex subunit RAP80, BRISC and BRCA1-A complex member 1, ... 著者 Bunker, R.D, Rabl, J, Thoma, N.H. 登録日 2018-06-21 公開日 2019-07-10 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (3.75 Å) 主引用文献 Structural Basis of BRCC36 Function in DNA Repair and Immune Regulation. Mol.Cell, 75, 2019
5ZD4	Crystal structure of MBP-fused BIL1/BZR1 in complex with double-stranded DNA 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*TP*TP*CP*AP*CP*AP*CP*GP*TP*GP*TP*GP*AP*AP*A)-3'), Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1, ... 著者 Nosaki, S, Miyakawa, T, Xu, Y, Nakamura, A, Hirabayashi, K, Tanokura, M. 登録日 2018-02-22 公開日 2018-08-29 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.17 Å) 主引用文献 Structural basis for brassinosteroid response by BIL1/BZR1. Nat Plants, 4, 2018
6H3C	Cryo-EM structure of the BRISC complex bound to SHMT2 分子名称: BRISC and BRCA1-A complex member 1, BRISC and BRCA1-A complex member 2, BRISC complex subunit Abraxas 2, ... 著者 Bunker, R.D, Rabl, J, Thoma, N.H. 登録日 2018-07-18 公開日 2019-07-10 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structural Basis of BRCC36 Function in DNA Repair and Immune Regulation. Mol.Cell, 75, 2019
2ABK	REFINEMENT OF THE NATIVE STRUCTURE OF ENDONUCLEASE III TO A RESOLUTION OF 1.85 ANGSTROM 分子名称: ENDONUCLEASE III, IRON/SULFUR CLUSTER 著者 Thayer, M.M, Tainer, J.A. 登録日 1995-05-11 公開日 1995-10-15 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Novel DNA binding motifs in the DNA repair enzyme endonuclease III crystal structure. EMBO J., 14, 1995
2B1B	5'-D(*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3' Zif268 binding site 分子名称: 5'-D(*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*CP*CP*AP*CP*GP*C)-3', MAGNESIUM ION 著者 Berman, H.M, Napoli, A.A. 登録日 2005-09-15 公開日 2005-09-27 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Signatures of protein-DNA recognition in free DNA binding sites. J.Mol.Biol., 386, 2009
2LVH	Solution structure of the zinc finger AFV1p06 protein from the hyperthermophilic archaeal virus AFV1 分子名称: Putative zinc finger protein ORF59a, ZINC ION 著者 Guilliere, F, Sezonov, G, Prangishvili, D, Delepierre, M, Guijarro, J. 登録日 2012-07-05 公開日 2013-01-30 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution structure of an archaeal DNA binding protein with an eukaryotic zinc finger fold. Plos One, 8, 2013
2MKG	Solution structure of the tandem UIMs of RAP80 分子名称: BRCA1-A complex subunit RAP80 著者 Anamika, Markin, C.J, Rout, M.K, Spyracopoulos, L. 登録日 2014-02-06 公開日 2014-03-19 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Molecular Basis for Impaired DNA Damage Response Function Associated with the RAP80 Delta E81 Defect. J.Biol.Chem., 289, 2014
4HPZ	Crystal structure of a TALE protein reveals an extended N-terminal DNA binding region 分子名称: SULFATE ION, dTale2 著者 Chai, J, Han, Z, Gao, H. 登録日 2012-10-25 公開日 2012-12-05 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.202 Å) 主引用文献 Crystal structure of a TALE protein reveals an extended N-terminal DNA binding region Cell Res., 22, 2012
1WG3	Structural analysis of yeast nucleosome-assembly factor CIA1p 分子名称: Anti-silencing protein 1 著者 Padmanabhan, B, Kataoka, K, Umehara, T, Adachi, N, Yokoyama, S, Horikoshi, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2004-05-27 公開日 2005-06-14 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural Similarity between Histone Chaperone Cia1p/Asf1p and DNA-Binding Protein NF-{kappa}B J.Biochem.(Tokyo), 138, 2005
2MKF	Solution structure of the E81 deletion mutant of the tandem UIMs of RAP80 分子名称: BRCA1-A complex subunit RAP80 著者 Anamika, Markin, C.J, Rout, M.K, Spyracopoulos, L. 登録日 2014-02-06 公開日 2014-03-19 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Molecular Basis for Impaired DNA Damage Response Function Associated with the RAP80 Delta E81 Defect. J.Biol.Chem., 289, 2014
4QLI	A novel phospho-switch in the linker region of the snail zinc finger protein which regulates 14-3-3 association, DNA binding and epithelial-mesenchymal differentiation 分子名称: 14-3-3 protein sigma, GLYCEROL, MAGNESIUM ION, ... 著者 Bier, D, Ottmann, C. 登録日 2014-06-12 公開日 2015-06-17 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 A novel phospho-switch in the linker region of the snail zinc finger protein which regulates 14-3-3 association, DNA binding and epithelial-mesenchymal differentiation To be Published
7CEI	THE ENDONUCLEASE DOMAIN OF COLICIN E7 IN COMPLEX WITH ITS INHIBITOR IM7 PROTEIN 分子名称: PROTEIN (COLICIN E7 IMMUNITY PROTEIN), ZINC ION 著者 Ko, T.P, Liao, C.C, Ku, W.Y, Chak, K.F, Yuan, H.S. 登録日 1998-09-17 公開日 1999-09-17 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 The crystal structure of the DNase domain of colicin E7 in complex with its inhibitor Im7 protein. Structure Fold.Des., 7, 1999
3C6H	Crystal Structure of the RB49 gp17 nuclease domain 分子名称: MAGNESIUM ION, Terminase large subunit 著者 Sun, S, Rossmann, M.G. 登録日 2008-02-04 公開日 2009-01-13 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 The structure of the phage T4 DNA packaging motor suggests a mechanism dependent on electrostatic forces. Cell(Cambridge,Mass.), 135, 2008
2B6C	Predicted DNA alkylation repair enzyme from Enterococcus faecalis. 分子名称: BETA-MERCAPTOETHANOL, CHLORIDE ION, GLYCEROL, ... 著者 Osipiuk, J, Hatzos, C, Moy, S, Collart, F, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2005-09-30 公開日 2005-11-15 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Xray structure of predicted DNA alkylation repair enzyme from Enterococcus faecalis. To be Published
3OIP	Crystal structure of Yeast telomere protein Cdc13 OB1 分子名称: Cell division control protein 13 著者 Sun, J, Yang, Y, Wan, K, Mao, N, Yu, T.Y, Lin, Y.C, DeZwaan, D.C, Freeman, B.C, Lin, J.J, Lue, N.F, Lei, M. 登録日 2010-08-19 公開日 2010-11-03 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.504 Å) 主引用文献 Structural bases of dimerization of yeast telomere protein Cdc13 and its interaction with the catalytic subunit of DNA polymerase alpha. Cell Res., 21, 2011
2F4M	The Mouse PNGase-HR23 Complex Reveals a Complete Remodulation of the Protein-Protein Interface Compared to its Yeast Orthologs 分子名称: CHLORIDE ION, UV excision repair protein RAD23 homolog B, ZINC ION, ... 著者 Zhao, G, Zhou, X, Wang, L, Kisker, C, Lennarz, W.J, Schindelin, H. 登録日 2005-11-23 公開日 2006-03-07 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Structure of the mouse peptide N-glycanase-HR23 complex suggests co-evolution of the endoplasmic reticulum-associated degradation and DNA repair pathways. J.Biol.Chem., 281, 2006
2XYZ	De Novo model of Bacteriophage P22 virion coat protein 分子名称: COAT PROTEIN 著者 Chen, D.-H, Baker, M.L, Hryc, C.F, DiMaio, F, Jakana, J, Wu, W, Dougherty, M, Haase-Pettingell, C, Schmid, M.F, Jiang, W, Baker, D, King, J.A, Chiu, W. 登録日 2010-11-19 公開日 2011-02-02 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Structural Basis for Scaffolding-Mediated Assembly and Maturation of a DsDNA Virus. Proc.Natl.Acad.Sci.USA, 108, 2011
3C6A	Crystal Structure of the RB49 gp17 nuclease domain 分子名称: MAGNESIUM ION, Terminase large subunit 著者 Sun, S, Rossmann, M.G. 登録日 2008-02-04 公開日 2009-01-13 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.16 Å) 主引用文献 The structure of the phage T4 DNA packaging motor suggests a mechanism dependent on electrostatic forces. Cell(Cambridge,Mass.), 135, 2008
2JXJ	NMR structure of the ARID domain from the histone H3K4 demethylase RBP2 分子名称: Histone demethylase JARID1A 著者 Tu, S, Yuan, C, Tsai, M. 登録日 2007-11-20 公開日 2008-09-30 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 The ARID domain of the H3K4 demethylase RBP2 binds to a DNA CCGCCC motif Nat.Struct.Mol.Biol., 15, 2008
2F4O	The Mouse PNGase-HR23 Complex Reveals a Complete Remodulation of the Protein-Protein Interface Compared to its Yeast Orthologs 分子名称: CHLORIDE ION, PHQ-VAL-ALA-ASP-CF0, XP-C repair complementing complex 58 kDa protein, ... 著者 Zhao, G, Zhou, X, Wang, L, Kisker, C, Lennarz, W.J, Schindelin, H. 登録日 2005-11-23 公開日 2006-03-07 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.26 Å) 主引用文献 Structure of the mouse peptide N-glycanase-HR23 complex suggests co-evolution of the endoplasmic reticulum-associated degradation and DNA repair pathways. J.Biol.Chem., 281, 2006

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