PDB: 1507 件ウェブページステータス検索Chemie searchBIRD

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4LJP	Structure of an active ligase (HOIP-H889A)/ubiquitin transfer complex 分子名称: E3 ubiquitin-protein ligase RNF31, Polyubiquitin-C, ZINC ION 著者 Rana, R.R, Stieglitz, B, Koliopoulos, M.G, Morris-Davies, A.C, Christodoulou, E, Howell, S, Brown, N.R, Rittinger, K. 登録日 2013-07-05 公開日 2013-10-16 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structural basis for ligase-specific conjugation of linear ubiquitin chains by HOIP. Nature, 503, 2013
2MA9	HIV-1 Vif SOCS-box and Elongin BC solution structure 分子名称: Transcription elongation factor B polypeptide 1, Transcription elongation factor B polypeptide 2, Virion infectivity factor 著者 Lu, Z, Bergeron, J.R, Atkinson, R.A, Schaller, T, Veselkov, D.A, Oregioni, A, Yang, Y, Matthews, S.J, Malim, M.H, Sanderson, M.R. 登録日 2013-07-01 公開日 2013-12-11 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Insight into the HIV-1 Vif SOCS-box-ElonginBC interaction. OPEN BIOLOGY, 3, 2013
4BVU	Structure of Shigella effector OspG in complex with host UbcH5c- Ubiquitin conjugate 分子名称: PROTEIN KINASE OSPG, UBIQUITIN, UBIQUITIN-CONJUGATING ENZYME E2 D3 著者 Pruneda, J.N, LeTrong, I, Stenkamp, R.E, Klevit, R.E, Brzovic, P.S. 登録日 2013-06-28 公開日 2014-01-29 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 E2~Ub Conjugates Regulate the Kinase Activity of Shigella Effector Ospg During Pathogenesis. Embo J., 33, 2014
4LDT	The structure of h/ceOTUB1-ubiquitin aldehyde-UBCH5B~Ub 分子名称: 1,2-ETHANEDIOL, MAGNESIUM ION, Ubiquitin, ... 著者 Wiener, R, DiBello, A.T, Lombardi, P.M, Guzzo, C.M, Zhang, X, Matunis, M.J, Wolberger, C. 登録日 2013-06-25 公開日 2013-08-14 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (1.901 Å) 主引用文献 E2 ubiquitin-conjugating enzymes regulate the deubiquitinating activity of OTUB1. Nat.Struct.Mol.Biol., 20, 2013
4LCD	Structure of an Rsp5xUbxSna3 complex: Mechanism of ubiquitin ligation and lysine prioritization by a HECT E3 分子名称: E3 ubiquitin-protein ligase RSP5, Protein SNA3, Ubiquitin 著者 Kamadurai, H.B, Miller, D, Schulman, B.A. 登録日 2013-06-21 公開日 2013-08-14 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Mechanism of ubiquitin ligation and lysine prioritization by a HECT E3. Elife, 2, 2013
2M8S	NMR Structure of the Cytoplasmic Tail of the Membrane Form of Heparin-binding EGF-like Growth Factor (proHB-EGF-CT) Complexed with the Ubiquitin Homology Domain of Bcl-2-associated Athanogene 1 from Mus musculus (mBAG-1-UBH) 分子名称: BAG family molecular chaperone regulator 1, Proheparin-binding EGF-like growth factor 著者 Huang, H.W, Yu, C. 登録日 2013-06-03 公開日 2014-04-16 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Nuclear Magnetic Resonance Structure of the Cytoplasmic Tail of Heparin Binding EGF-like Growth Factor (proHB-EGF-CT) Complexed with the Ubiquitin Homology Domain of Bcl-2-Associated Athanogene 1 from Mus musculus (mBAG-1-UBH). Biochemistry, 53, 2014
4KZZ	Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A 分子名称: 18S Ribosomal RNA, 40S Ribosomal Protein RACK1, 40S Ribosomal Protein S10, ... 著者 Lomakin, I.B, Steitz, T.A. 登録日 2013-05-30 公開日 2013-07-24 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (7.0305 Å) 主引用文献 The initiation of mammalian protein synthesis and mRNA scanning mechanism. Nature, 500, 2013
4KZX	Rabbit 40S ribosomal subunit in complex with eIF1. 分子名称: 18S ribosomal RNA, 40S Ribosomal protein S9, 40S ribosomal protein RACK1, ... 著者 Lomakin, I.B, Steitz, T.A. 登録日 2013-05-30 公開日 2013-07-24 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (7.809 Å) 主引用文献 The initiation of mammalian protein synthesis and mRNA scanning mechanism. Nature, 500, 2013
4KZY	Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A. 分子名称: 18S Ribosomal RNA, 40S Ribosomal Protein RACK1, 40S Ribosomal Protein S10, ... 著者 Lomakin, I.B, Steitz, T.A. 登録日 2013-05-30 公開日 2013-07-24 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (7.01 Å) 主引用文献 The initiation of mammalian protein synthesis and mRNA scanning mechanism. Nature, 500, 2013
4BOZ	Structure of OTUD2 OTU domain in complex with K11-linked di ubiquitin 分子名称: GLYCEROL, UBIQUITIN THIOESTERASE OTU1, UBIQUITIN-C 著者 Mevissen, T.E.T, Hospenthal, M.K, Geurink, P.P, Elliott, P.R, Akutsu, M, Arnaudo, N, Ekkebus, R, Kulathu, Y, Wauer, T, El Oualid, F, Freund, S.M.V, Ovaa, H, Komander, D. 登録日 2013-05-22 公開日 2013-07-17 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.03 Å) 主引用文献 Otu Deubiquitinases Reveal Mechanisms of Linkage Specificity and Enable Ubiquitin Chain Restriction Analysis. Cell(Cambridge,Mass.), 154, 2013
4BOS	Structure of OTUD2 OTU domain in complex with Ubiquitin K11-linked peptide 分子名称: MAGNESIUM ION, NITRATE ION, OTUD2, ... 著者 Mevissen, T.E.T, Hospenthal, M.K, Geurink, P.P, Elliott, P.R, Akutsu, M, Arnaudo, N, Ekkebus, R, Kulathu, Y, Wauer, T, El Oualid, F, Freund, S.M.V, Ovaa, H, Komander, D. 登録日 2013-05-22 公開日 2013-07-24 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Otu Deubiquitinases Reveal Mechanisms of Linkage Specificity and Enable Ubiquitin Chain Restriction Analysis. Cell(Cambridge,Mass.), 154, 2013
4KSK	Gumby/Fam105B in complex with ubiquitin 分子名称: Polyubiquitin-C, Protein FAM105B, SULFATE ION 著者 Ceccarelli, D.F, Juang, Y.-C, Sicheri, F. 登録日 2013-05-17 公開日 2013-06-05 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 The linear ubiquitin-specific deubiquitinase gumby regulates angiogenesis. Nature, 498, 2013
4KSL	Gumby/Fam105B in complex with linear di-ubiquitin 分子名称: Polyubiquitin-C, Protein FAM105B 著者 Juang, Y.-C, Ceccarelli, D.F, Sicheri, F. 登録日 2013-05-17 公開日 2013-06-05 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.83 Å) 主引用文献 The linear ubiquitin-specific deubiquitinase gumby regulates angiogenesis. Nature, 498, 2013
4BKT	von Hippel Lindau protein:ElonginB:ElonginC complex, in complex with (2S,4R)-N-methyl-1-[2-(3-methyl-1,2-oxazol-5-yl)ethanoyl]-4-oxidanyl-pyrrolidine-2-carboxamide 分子名称: (2S,4R)-N-methyl-1-[2-(3-methyl-1,2-oxazol-5-yl)ethanoyl]-4-oxidanyl-pyrrolidine-2-carboxamide, ARGININE, GLUTAMIC ACID, ... 著者 Van Molle, I, Dias, D.M, Baud, M, Galdeano, C, Geraldes, C.F.G.C, Ciulli, A. 登録日 2013-04-29 公開日 2013-11-27 最終更新日 2017-07-12 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Is NMR Fragment Screening Fine-Tuned to Assess Druggability of Protein-Protein Interactions? Acs Med.Chem.Lett., 5, 2014
4BKS	von Hippel Lindau protein:ElonginB:ElonginC complex, in complex with (2S,4R)-1-ethanoyl-N-[[4-(1,3-oxazol-5-yl)phenyl]methyl]-4-oxidanyl-pyrrolidine-2-carboxamide 分子名称: (2S,4R)-1-ethanoyl-N-[[4-(1,3-oxazol-5-yl)phenyl]methyl]-4-oxidanyl-pyrrolidine-2-carboxamide, ACETATE ION, TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1, ... 著者 Van Molle, I, Dias, D.M, Baud, M, Galdeano, C, Geraldes, C.F.G.C, Ciulli, A. 登録日 2013-04-29 公開日 2013-11-27 最終更新日 2014-01-29 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Is NMR Fragment Screening Fine-Tuned to Assess Druggability of Protein-Protein Interactions? Acs Med.Chem.Lett., 5, 2014
4K95	Crystal Structure of Parkin 分子名称: E3 ubiquitin-protein ligase parkin, ZINC ION 著者 Seirafi, M, Menade, M, Sauve, V, Kozlov, G, Trempe, J.-F, Nagar, B, Gehring, K. 登録日 2013-04-19 公開日 2013-05-15 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (6.499 Å) 主引用文献 Structure of parkin reveals mechanisms for ubiquitin ligase activation. Science, 340, 2013
4K7U	Crystal structure of Zn2.3-hUb (human ubiquitin) adduct from a solution 70 mM zinc acetate/1.3 mM hUb 分子名称: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ... 著者 Fermani, S, Falini, G, Calvaresi, M, Bottoni, A, Arnesano, F, Natile, G. 登録日 2013-04-17 公開日 2013-05-08 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 Conformational selection of ubiquitin quaternary structures driven by zinc ions. Chemistry, 19, 2013
4K7W	Crystal structure of Zn3-hUb(human ubiquitin) adduct from a solution 100 mM zinc acetate/1.3 mM hUb 分子名称: 1,2-ETHANEDIOL, ACETATE ION, ZINC ION, ... 著者 Fermani, S, Falini, G, Calvaresi, M, Bottoni, A, Arnesano, F, Natile, G. 登録日 2013-04-17 公開日 2013-05-08 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 Conformational selection of ubiquitin quaternary structures driven by zinc ions. Chemistry, 19, 2013
4K7S	Crystal structure of Zn2-hUb (human ubiquitin) adduct from a solution 35 mM zinc acetate/1.3 mM hUb 分子名称: 1,2-ETHANEDIOL, ACETATE ION, ZINC ION, ... 著者 Fermani, S, Falini, G, Calvaresi, M, Bottoni, A, Arnesano, F, Natile, G. 登録日 2013-04-17 公開日 2013-05-08 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 Conformational selection of ubiquitin quaternary structures driven by zinc ions. Chemistry, 19, 2013
4K1R	Crystal structure of Schizosaccharomyces pombe sst2 catalytic domain and Ubiquitin 分子名称: 1,2-ETHANEDIOL, AMSH-like protease sst2, CHLORIDE ION, ... 著者 Shrestha, R.K, Das, C. 登録日 2013-04-05 公開日 2014-04-23 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.632 Å) 主引用文献 Insights into the Mechanism of Deubiquitination by JAMM Deubiquitinases from Cocrystal Structures of the Enzyme with the Substrate and Product. Biochemistry, 53, 2014
4JQW	Crystal Structure of a Complex of NOD1 CARD and Ubiquitin 分子名称: Nucleotide-binding oligomerization domain-containing protein 1, PHOSPHATE ION, Polyubiquitin-C 著者 Ver Heul, A.M, Gakhar, L, Piper, R.C, Ramaswamy, S. 登録日 2013-03-20 公開日 2014-03-26 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Crystal structure of a complex of NOD1 CARD and ubiquitin Plos One, 9, 2014
4JIO	Bro1 V domain and ubiquitin 分子名称: BRO1, Ubiquitin 著者 Pashkova, N, Gakhar, L, Piper, R.C. 登録日 2013-03-06 公開日 2013-06-19 最終更新日 2013-07-10 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 The yeast alix homolog bro1 functions as a ubiquitin receptor for protein sorting into multivesicular endosomes. Dev.Cell, 25, 2013
4JGH	Structure of the SOCS2-Elongin BC complex bound to an N-terminal fragment of Cullin5 分子名称: Cullin-5, Suppressor of cytokine signaling 2, Transcription elongation factor B polypeptide 1, ... 著者 Kim, Y.K, Kwak, M.J, Ku, B, Suh, H.Y, Joo, K, Lee, J, Jung, J.U, Oh, B.H. 登録日 2013-03-01 公開日 2013-08-07 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural basis of intersubunit recognition in elongin BC-cullin 5-SOCS box ubiquitin-protein ligase complexes. Acta Crystallogr.,Sect.D, 69, 2013
3ZNZ	Crystal structure of OTULIN OTU domain (C129A) in complex with Met1- di ubiquitin 分子名称: POLYUBIQUITIN-C, PROTEIN FAM105B, SULFATE ION 著者 Keusekotten, K, Elliott, P.R, Glockner, L, Kulathu, Y, Wauer, T, Krappmann, D, Hofmann, K, Komander, D. 登録日 2013-02-18 公開日 2013-06-26 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Otulin Antagonizes Lubac Signaling by Specifically Hydrolyzing met1-Linked Polyubiquitin. Cell(Cambridge,Mass.), 153, 2013
3ZNI	Structure of phosphoTyr363-Cbl-b - UbcH5B-Ub - ZAP-70 peptide complex 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, E3 UBIQUITIN-PROTEIN LIGASE CBL-B, ... 著者 Dou, H, Buetow, L, Sibbet, G.J, Cameron, K, Huang, D.T. 登録日 2013-02-14 公開日 2013-07-10 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.21 Å) 主引用文献 Essentiality of a Non-Ring Element in Priming Donor Ubiquitin for Catalysis by a Monomeric E3. Nat.Struct.Mol.Biol., 20, 2013

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